Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A86:A87
Extra
PDB:
ATOM 1 O3' G A 85 2.298 -13.527 12.519 1.00 78.72 O
ATOM 2 P A A 86 2.397 -12.280 11.511 1.00 78.61 P
ATOM 3 OP1 A A 86 1.452 -11.190 11.841 1.00 78.77 O
ATOM 4 OP2 A A 86 2.462 -12.794 10.134 1.00 76.15 O
ATOM 5 O5' A A 86 3.818 -11.687 11.916 1.00 77.25 O
ATOM 6 C5' A A 86 3.968 -10.647 12.857 1.00 74.69 C
ATOM 7 C4' A A 86 5.426 -10.236 12.874 1.00 74.44 C
ATOM 8 O4' A A 86 6.326 -11.362 12.732 1.00 73.75 O
ATOM 9 C3' A A 86 5.839 -9.371 11.704 1.00 73.26 C
ATOM 10 O3' A A 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 11 C2' A A 86 7.352 -9.486 11.777 1.00 72.37 C
ATOM 12 O2' A A 86 7.888 -8.782 12.877 1.00 75.46 O
ATOM 13 C1' A A 86 7.497 -10.960 12.037 1.00 71.21 C
ATOM 14 N9 A A 86 7.626 -11.821 10.872 1.00 70.02 N
ATOM 15 C8 A A 86 6.645 -12.527 10.229 1.00 68.94 C
ATOM 16 N7 A A 86 7.061 -13.254 9.221 1.00 67.31 N
ATOM 17 C5 A A 86 8.396 -13.015 9.215 1.00 66.11 C
ATOM 18 C6 A A 86 9.385 -13.512 8.386 1.00 66.17 C
ATOM 19 N6 A A 86 9.095 -14.354 7.415 1.00 61.17 N
ATOM 20 N1 A A 86 10.657 -13.103 8.630 1.00 68.68 N
ATOM 21 C2 A A 86 10.877 -12.245 9.649 1.00 67.12 C
ATOM 22 N3 A A 86 10.014 -11.708 10.504 1.00 65.44 N
ATOM 23 C4 A A 86 8.783 -12.149 10.224 1.00 67.82 C
ATOM 24 P U A 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 25 OP1 U A 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 26 OP2 U A 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 27 O5' U A 87 6.111 -6.995 9.877 1.00 65.65 O
TER
ATOM 1 O3' A B 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 2 P U B 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 3 OP1 U B 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 4 OP2 U B 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 5 O5' U B 87 6.111 -6.995 9.877 1.00 65.65 O
ATOM 6 C5' U B 87 6.833 -5.908 10.354 1.00 65.94 C
ATOM 7 C4' U B 87 8.148 -5.811 9.653 1.00 64.77 C
ATOM 8 O4' U B 87 8.887 -7.054 9.766 1.00 62.80 O
ATOM 9 C3' U B 87 7.997 -5.611 8.169 1.00 63.40 C
ATOM 10 O3' U B 87 7.563 -4.318 7.890 1.00 62.68 O
ATOM 11 C2' U B 87 9.454 -5.864 7.863 1.00 63.75 C
ATOM 12 O2' U B 87 10.215 -4.808 8.426 1.00 65.20 O
ATOM 13 C1' U B 87 9.619 -7.215 8.577 1.00 60.43 C
ATOM 14 N1 U B 87 9.092 -8.406 7.842 1.00 57.67 N
ATOM 15 C2 U B 87 9.857 -8.899 6.836 1.00 57.96 C
ATOM 16 O2 U B 87 10.922 -8.384 6.539 1.00 58.06 O
ATOM 17 N3 U B 87 9.329 -9.994 6.189 1.00 57.88 N
ATOM 18 C4 U B 87 8.119 -10.639 6.431 1.00 59.12 C
ATOM 19 O4 U B 87 7.760 -11.599 5.756 1.00 62.41 O
ATOM 20 C5 U B 87 7.378 -10.066 7.510 1.00 59.22 C
ATOM 21 C6 U B 87 7.883 -8.994 8.143 1.00 59.63 C
ATOM 22 P G B 88 6.880 -3.971 6.479 1.00 64.87 P
ATOM 23 OP1 G B 88 6.390 -2.570 6.554 1.00 64.46 O
ATOM 24 OP2 G B 88 5.983 -5.090 6.111 1.00 62.28 O
ATOM 25 O5' G B 88 8.057 -4.036 5.407 1.00 64.48 O
TER
ATOM 2 P A A 86 2.397 -12.280 11.511 1.00 78.61 P
ATOM 3 OP1 A A 86 1.452 -11.190 11.841 1.00 78.77 O
ATOM 4 OP2 A A 86 2.462 -12.794 10.134 1.00 76.15 O
ATOM 5 O5' A A 86 3.818 -11.687 11.916 1.00 77.25 O
ATOM 6 C5' A A 86 3.968 -10.647 12.857 1.00 74.69 C
ATOM 7 C4' A A 86 5.426 -10.236 12.874 1.00 74.44 C
ATOM 8 O4' A A 86 6.326 -11.362 12.732 1.00 73.75 O
ATOM 9 C3' A A 86 5.839 -9.371 11.704 1.00 73.26 C
ATOM 10 O3' A A 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 11 C2' A A 86 7.352 -9.486 11.777 1.00 72.37 C
ATOM 12 O2' A A 86 7.888 -8.782 12.877 1.00 75.46 O
ATOM 13 C1' A A 86 7.497 -10.960 12.037 1.00 71.21 C
ATOM 14 N9 A A 86 7.626 -11.821 10.872 1.00 70.02 N
ATOM 15 C8 A A 86 6.645 -12.527 10.229 1.00 68.94 C
ATOM 16 N7 A A 86 7.061 -13.254 9.221 1.00 67.31 N
ATOM 17 C5 A A 86 8.396 -13.015 9.215 1.00 66.11 C
ATOM 18 C6 A A 86 9.385 -13.512 8.386 1.00 66.17 C
ATOM 19 N6 A A 86 9.095 -14.354 7.415 1.00 61.17 N
ATOM 20 N1 A A 86 10.657 -13.103 8.630 1.00 68.68 N
ATOM 21 C2 A A 86 10.877 -12.245 9.649 1.00 67.12 C
ATOM 22 N3 A A 86 10.014 -11.708 10.504 1.00 65.44 N
ATOM 23 C4 A A 86 8.783 -12.149 10.224 1.00 67.82 C
ATOM 24 P U A 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 25 OP1 U A 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 26 OP2 U A 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 27 O5' U A 87 6.111 -6.995 9.877 1.00 65.65 O
TER
ATOM 1 O3' A B 86 5.354 -8.055 11.926 1.00 71.23 O
ATOM 2 P U B 87 4.786 -7.266 10.682 1.00 69.38 P
ATOM 3 OP1 U B 87 4.244 -5.972 11.166 1.00 69.52 O
ATOM 4 OP2 U B 87 3.996 -8.205 9.850 1.00 71.80 O
ATOM 5 O5' U B 87 6.111 -6.995 9.877 1.00 65.65 O
ATOM 6 C5' U B 87 6.833 -5.908 10.354 1.00 65.94 C
ATOM 7 C4' U B 87 8.148 -5.811 9.653 1.00 64.77 C
ATOM 8 O4' U B 87 8.887 -7.054 9.766 1.00 62.80 O
ATOM 9 C3' U B 87 7.997 -5.611 8.169 1.00 63.40 C
ATOM 10 O3' U B 87 7.563 -4.318 7.890 1.00 62.68 O
ATOM 11 C2' U B 87 9.454 -5.864 7.863 1.00 63.75 C
ATOM 12 O2' U B 87 10.215 -4.808 8.426 1.00 65.20 O
ATOM 13 C1' U B 87 9.619 -7.215 8.577 1.00 60.43 C
ATOM 14 N1 U B 87 9.092 -8.406 7.842 1.00 57.67 N
ATOM 15 C2 U B 87 9.857 -8.899 6.836 1.00 57.96 C
ATOM 16 O2 U B 87 10.922 -8.384 6.539 1.00 58.06 O
ATOM 17 N3 U B 87 9.329 -9.994 6.189 1.00 57.88 N
ATOM 18 C4 U B 87 8.119 -10.639 6.431 1.00 59.12 C
ATOM 19 O4 U B 87 7.760 -11.599 5.756 1.00 62.41 O
ATOM 20 C5 U B 87 7.378 -10.066 7.510 1.00 59.22 C
ATOM 21 C6 U B 87 7.883 -8.994 8.143 1.00 59.63 C
ATOM 22 P G B 88 6.880 -3.971 6.479 1.00 64.87 P
ATOM 23 OP1 G B 88 6.390 -2.570 6.554 1.00 64.46 O
ATOM 24 OP2 G B 88 5.983 -5.090 6.111 1.00 62.28 O
ATOM 25 O5' G B 88 8.057 -4.036 5.407 1.00 64.48 O
TER
Atoms:
OP1: (1.452,-11.190,11.841)
OP2: (2.462,-12.794,10.134)
C3': (5.839,-9.371,11.704)
C1': (7.497,-10.960,12.037)
C5': (3.968,-10.647,12.857)
O4': (6.326,-11.362,12.732)
C8: (6.645,-12.527,10.229)
O2': (7.888,-8.782,12.877)
C6: (9.385,-13.512,8.386)
C5: (8.396,-13.015,9.215)
C4: (8.783,-12.149,10.224)
P: (2.397,-12.280,11.511)
C4': (5.426,-10.236,12.874)
C2': (7.352,-9.486,11.777)
C2: (10.877,-12.245,9.649)
N1: (10.657,-13.103,8.630)
N3: (10.014,-11.708,10.504)
N6: (9.095,-14.354,7.415)
N7: (7.061,-13.254,9.221)
N9: (7.626,-11.821,10.872)
O5': (3.818,-11.687,11.916)
O3': (5.354,-8.055,11.926)
OP2: (2.462,-12.794,10.134)
C3': (5.839,-9.371,11.704)
C1': (7.497,-10.960,12.037)
C5': (3.968,-10.647,12.857)
O4': (6.326,-11.362,12.732)
C8: (6.645,-12.527,10.229)
O2': (7.888,-8.782,12.877)
C6: (9.385,-13.512,8.386)
C5: (8.396,-13.015,9.215)
C4: (8.783,-12.149,10.224)
P: (2.397,-12.280,11.511)
C4': (5.426,-10.236,12.874)
C2': (7.352,-9.486,11.777)
C2: (10.877,-12.245,9.649)
N1: (10.657,-13.103,8.630)
N3: (10.014,-11.708,10.504)
N6: (9.095,-14.354,7.415)
N7: (7.061,-13.254,9.221)
N9: (7.626,-11.821,10.872)
O5': (3.818,-11.687,11.916)
O3': (5.354,-8.055,11.926)
C4: (8.119,-10.639,6.431)
N3: (9.329,-9.994,6.189)
OP1: (4.244,-5.972,11.166)
OP2: (3.996,-8.205,9.850)
C2: (9.857,-8.899,6.836)
C1': (9.619,-7.215,8.577)
C3': (7.997,-5.611,8.169)
O5': (6.111,-6.995,9.877)
O4': (8.887,-7.054,9.766)
C5': (6.833,-5.908,10.354)
P: (4.786,-7.266,10.682)
C4': (8.148,-5.811,9.653)
C2': (9.454,-5.864,7.863)
O2': (10.215,-4.808,8.426)
N1: (9.092,-8.406,7.842)
O4: (7.760,-11.599,5.756)
O2: (10.922,-8.384,6.539)
C6: (7.883,-8.994,8.143)
C5: (7.378,-10.066,7.510)
O3': (7.563,-4.318,7.890)
N3: (9.329,-9.994,6.189)
OP1: (4.244,-5.972,11.166)
OP2: (3.996,-8.205,9.850)
C2: (9.857,-8.899,6.836)
C1': (9.619,-7.215,8.577)
C3': (7.997,-5.611,8.169)
O5': (6.111,-6.995,9.877)
O4': (8.887,-7.054,9.766)
C5': (6.833,-5.908,10.354)
P: (4.786,-7.266,10.682)
C4': (8.148,-5.811,9.653)
C2': (9.454,-5.864,7.863)
O2': (10.215,-4.808,8.426)
N1: (9.092,-8.406,7.842)
O4: (7.760,-11.599,5.756)
O2: (10.922,-8.384,6.539)
C6: (7.883,-8.994,8.143)
C5: (7.378,-10.066,7.510)
O3': (7.563,-4.318,7.890)
Image (generated by PyMOL):