Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DUQ:B6:B7
Extra
PDB:
ATOM 1 O3' C A 5 -4.063 -1.110 -19.019 1.00 24.27 O
ATOM 2 P G A 6 -3.012 -1.396 -20.176 1.00 30.76 P
ATOM 3 OP1 G A 6 -3.692 -1.129 -21.449 1.00 29.75 O
ATOM 4 OP2 G A 6 -2.404 -2.729 -19.907 1.00 30.73 O
ATOM 5 O5' G A 6 -1.932 -0.241 -19.937 1.00 33.86 O
ATOM 6 C5' G A 6 -2.293 1.130 -20.063 1.00 25.82 C
ATOM 7 C4' G A 6 -1.104 2.025 -19.709 1.00 23.62 C
ATOM 8 O4' G A 6 -0.713 1.777 -18.331 1.00 28.44 O
ATOM 9 C3' G A 6 0.183 1.755 -20.484 1.00 24.98 C
ATOM 10 O3' G A 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 11 C2' G A 6 1.228 2.373 -19.552 1.00 21.56 C
ATOM 12 O2' G A 6 1.150 3.767 -19.595 1.00 23.69 O
ATOM 13 C1' G A 6 0.672 2.019 -18.179 1.00 23.45 C
ATOM 14 N9 G A 6 1.289 0.899 -17.483 1.00 21.43 N
ATOM 15 C8 G A 6 0.765 -0.364 -17.305 1.00 18.33 C
ATOM 16 N7 G A 6 1.526 -1.140 -16.580 1.00 27.05 N
ATOM 17 C5 G A 6 2.629 -0.352 -16.267 1.00 19.86 C
ATOM 18 C6 G A 6 3.764 -0.662 -15.503 1.00 23.90 C
ATOM 19 O6 G A 6 4.017 -1.728 -14.917 1.00 19.78 O
ATOM 20 N1 G A 6 4.661 0.433 -15.433 1.00 21.59 N
ATOM 21 C2 G A 6 4.455 1.664 -16.026 1.00 20.67 C
ATOM 22 N2 G A 6 5.418 2.600 -15.847 1.00 33.44 N
ATOM 23 N3 G A 6 3.376 1.962 -16.748 1.00 20.55 N
ATOM 24 C4 G A 6 2.509 0.909 -16.825 1.00 13.77 C
ATOM 25 P G A 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 26 OP1 G A 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 27 OP2 G A 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 28 O5' G A 7 2.599 2.448 -22.555 1.00 33.14 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
ATOM 2 P G A 6 -3.012 -1.396 -20.176 1.00 30.76 P
ATOM 3 OP1 G A 6 -3.692 -1.129 -21.449 1.00 29.75 O
ATOM 4 OP2 G A 6 -2.404 -2.729 -19.907 1.00 30.73 O
ATOM 5 O5' G A 6 -1.932 -0.241 -19.937 1.00 33.86 O
ATOM 6 C5' G A 6 -2.293 1.130 -20.063 1.00 25.82 C
ATOM 7 C4' G A 6 -1.104 2.025 -19.709 1.00 23.62 C
ATOM 8 O4' G A 6 -0.713 1.777 -18.331 1.00 28.44 O
ATOM 9 C3' G A 6 0.183 1.755 -20.484 1.00 24.98 C
ATOM 10 O3' G A 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 11 C2' G A 6 1.228 2.373 -19.552 1.00 21.56 C
ATOM 12 O2' G A 6 1.150 3.767 -19.595 1.00 23.69 O
ATOM 13 C1' G A 6 0.672 2.019 -18.179 1.00 23.45 C
ATOM 14 N9 G A 6 1.289 0.899 -17.483 1.00 21.43 N
ATOM 15 C8 G A 6 0.765 -0.364 -17.305 1.00 18.33 C
ATOM 16 N7 G A 6 1.526 -1.140 -16.580 1.00 27.05 N
ATOM 17 C5 G A 6 2.629 -0.352 -16.267 1.00 19.86 C
ATOM 18 C6 G A 6 3.764 -0.662 -15.503 1.00 23.90 C
ATOM 19 O6 G A 6 4.017 -1.728 -14.917 1.00 19.78 O
ATOM 20 N1 G A 6 4.661 0.433 -15.433 1.00 21.59 N
ATOM 21 C2 G A 6 4.455 1.664 -16.026 1.00 20.67 C
ATOM 22 N2 G A 6 5.418 2.600 -15.847 1.00 33.44 N
ATOM 23 N3 G A 6 3.376 1.962 -16.748 1.00 20.55 N
ATOM 24 C4 G A 6 2.509 0.909 -16.825 1.00 13.77 C
ATOM 25 P G A 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 26 OP1 G A 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 27 OP2 G A 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 28 O5' G A 7 2.599 2.448 -22.555 1.00 33.14 O
TER
ATOM 1 O3' G B 6 0.153 2.393 -21.779 1.00 20.70 O
ATOM 2 P G B 7 1.143 1.882 -22.944 1.00 28.79 P
ATOM 3 OP1 G B 7 0.774 2.462 -24.240 1.00 26.86 O
ATOM 4 OP2 G B 7 1.227 0.433 -22.778 1.00 25.10 O
ATOM 5 O5' G B 7 2.599 2.448 -22.555 1.00 33.14 O
ATOM 6 C5' G B 7 2.890 3.872 -22.437 1.00 31.09 C
ATOM 7 C4' G B 7 4.348 4.048 -21.981 1.00 14.85 C
ATOM 8 O4' G B 7 4.517 3.365 -20.726 1.00 24.39 O
ATOM 9 C3' G B 7 5.357 3.451 -22.987 1.00 33.77 C
ATOM 10 O3' G B 7 6.483 4.332 -23.119 1.00 33.97 O
ATOM 11 C2' G B 7 6.004 2.276 -22.238 1.00 21.02 C
ATOM 12 O2' G B 7 7.376 2.113 -22.433 1.00 32.10 O
ATOM 13 C1' G B 7 5.698 2.618 -20.786 1.00 24.04 C
ATOM 14 N9 G B 7 5.697 1.546 -19.807 1.00 23.87 N
ATOM 15 C8 G B 7 6.599 1.397 -18.803 1.00 23.72 C
ATOM 16 N7 G B 7 6.490 0.266 -18.174 1.00 24.03 N
ATOM 17 C5 G B 7 5.413 -0.351 -18.777 1.00 30.26 C
ATOM 18 C6 G B 7 4.850 -1.595 -18.515 1.00 28.81 C
ATOM 19 O6 G B 7 5.224 -2.419 -17.685 1.00 33.89 O
ATOM 20 N1 G B 7 3.751 -1.848 -19.337 1.00 23.47 N
ATOM 21 C2 G B 7 3.278 -0.968 -20.297 1.00 40.90 C
ATOM 22 N2 G B 7 2.212 -1.361 -21.006 1.00 31.04 N
ATOM 23 N3 G B 7 3.819 0.222 -20.546 1.00 23.30 N
ATOM 24 C4 G B 7 4.880 0.451 -19.759 1.00 36.05 C
ATOM 25 P U B 8 6.556 5.497 -24.205 1.00 36.07 P
ATOM 26 OP1 U B 8 7.496 6.453 -23.574 1.00 41.11 O
ATOM 27 OP2 U B 8 5.234 5.967 -24.641 1.00 42.46 O
ATOM 28 O5' U B 8 7.339 4.867 -25.430 1.00 28.90 O
TER
Atoms:
OP1: (-3.692,-1.129,-21.449)
OP2: (-2.404,-2.729,-19.907)
C3': (0.183,1.755,-20.484)
C1': (0.672,2.019,-18.179)
C5': (-2.293,1.130,-20.063)
O6: (4.017,-1.728,-14.917)
O4': (-0.713,1.777,-18.331)
C8: (0.765,-0.364,-17.305)
C2: (4.455,1.664,-16.026)
C6: (3.764,-0.662,-15.503)
C5: (2.629,-0.352,-16.267)
C4: (2.509,0.909,-16.825)
P: (-3.012,-1.396,-20.176)
C4': (-1.104,2.025,-19.709)
C2': (1.228,2.373,-19.552)
O2': (1.150,3.767,-19.595)
N1: (4.661,0.433,-15.433)
N2: (5.418,2.600,-15.847)
N3: (3.376,1.962,-16.748)
N7: (1.526,-1.140,-16.580)
N9: (1.289,0.899,-17.483)
O5': (-1.932,-0.241,-19.937)
O3': (0.153,2.393,-21.779)
OP2: (-2.404,-2.729,-19.907)
C3': (0.183,1.755,-20.484)
C1': (0.672,2.019,-18.179)
C5': (-2.293,1.130,-20.063)
O6: (4.017,-1.728,-14.917)
O4': (-0.713,1.777,-18.331)
C8: (0.765,-0.364,-17.305)
C2: (4.455,1.664,-16.026)
C6: (3.764,-0.662,-15.503)
C5: (2.629,-0.352,-16.267)
C4: (2.509,0.909,-16.825)
P: (-3.012,-1.396,-20.176)
C4': (-1.104,2.025,-19.709)
C2': (1.228,2.373,-19.552)
O2': (1.150,3.767,-19.595)
N1: (4.661,0.433,-15.433)
N2: (5.418,2.600,-15.847)
N3: (3.376,1.962,-16.748)
N7: (1.526,-1.140,-16.580)
N9: (1.289,0.899,-17.483)
O5': (-1.932,-0.241,-19.937)
O3': (0.153,2.393,-21.779)
OP1: (0.774,2.462,-24.240)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
OP2: (1.227,0.433,-22.778)
C3': (5.357,3.451,-22.987)
C1': (5.698,2.618,-20.786)
C5': (2.890,3.872,-22.437)
O6: (5.224,-2.419,-17.685)
O4': (4.517,3.365,-20.726)
C8: (6.599,1.397,-18.803)
C2: (3.278,-0.968,-20.297)
C6: (4.850,-1.595,-18.515)
C5: (5.413,-0.351,-18.777)
C4: (4.880,0.451,-19.759)
P: (1.143,1.882,-22.944)
C4': (4.348,4.048,-21.981)
C2': (6.004,2.276,-22.238)
O2': (7.376,2.113,-22.433)
N1: (3.751,-1.848,-19.337)
N2: (2.212,-1.361,-21.006)
N3: (3.819,0.222,-20.546)
N7: (6.490,0.266,-18.174)
N9: (5.697,1.546,-19.807)
O5': (2.599,2.448,-22.555)
O3': (6.483,4.332,-23.119)
Image (generated by PyMOL):