Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A280:A346
Extra
PDB:
ATOM 1 O3' C A 279 55.720 128.877 -1.534 1.00 87.33 O
ATOM 2 P G A 280 55.121 129.721 -0.310 1.00 87.43 P
ATOM 3 OP1 G A 280 54.099 130.657 -0.847 1.00 87.52 O
ATOM 4 OP2 G A 280 56.272 130.267 0.468 1.00 88.36 O
ATOM 5 O5' G A 280 54.345 128.620 0.547 1.00 87.30 O
ATOM 6 C5' G A 280 53.163 127.972 0.010 1.00 85.57 C
ATOM 7 C4' G A 280 52.785 126.770 0.844 1.00 84.63 C
ATOM 8 O4' G A 280 53.824 125.752 0.771 1.00 83.39 O
ATOM 9 C3' G A 280 52.652 127.063 2.325 1.00 84.44 C
ATOM 10 O3' G A 280 51.391 127.621 2.670 1.00 85.76 O
ATOM 11 C2' G A 280 52.893 125.701 2.954 1.00 83.07 C
ATOM 12 O2' G A 280 51.745 124.878 2.941 1.00 82.87 O
ATOM 13 C1' G A 280 53.990 125.146 2.041 1.00 82.11 C
ATOM 14 N9 G A 280 55.312 125.506 2.542 1.00 80.52 N
ATOM 15 C8 G A 280 56.002 126.675 2.311 1.00 79.87 C
ATOM 16 N7 G A 280 57.127 126.746 2.970 1.00 79.92 N
ATOM 17 C5 G A 280 57.198 125.543 3.659 1.00 80.15 C
ATOM 18 C6 G A 280 58.189 125.053 4.557 1.00 79.83 C
ATOM 19 O6 G A 280 59.224 125.610 4.933 1.00 79.62 O
ATOM 20 N1 G A 280 57.870 123.785 5.031 1.00 78.84 N
ATOM 21 C2 G A 280 56.740 123.082 4.692 1.00 78.92 C
ATOM 22 N2 G A 280 56.603 121.878 5.249 1.00 79.07 N
ATOM 23 N3 G A 280 55.805 123.528 3.863 1.00 78.88 N
ATOM 24 C4 G A 280 56.096 124.757 3.389 1.00 79.98 C
ATOM 25 P A A 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 26 OP1 A A 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 27 OP2 A A 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 28 O5' A A 281 51.042 127.175 5.115 1.00 86.24 O
TER
ATOM 1 O3' A B 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 2 P G B 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G B 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G B 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G B 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G B 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G B 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G B 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G B 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G B 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G B 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G B 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G B 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G B 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G B 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G B 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G B 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G B 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G B 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G B 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G B 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G B 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G B 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
TER
ATOM 2 P G A 280 55.121 129.721 -0.310 1.00 87.43 P
ATOM 3 OP1 G A 280 54.099 130.657 -0.847 1.00 87.52 O
ATOM 4 OP2 G A 280 56.272 130.267 0.468 1.00 88.36 O
ATOM 5 O5' G A 280 54.345 128.620 0.547 1.00 87.30 O
ATOM 6 C5' G A 280 53.163 127.972 0.010 1.00 85.57 C
ATOM 7 C4' G A 280 52.785 126.770 0.844 1.00 84.63 C
ATOM 8 O4' G A 280 53.824 125.752 0.771 1.00 83.39 O
ATOM 9 C3' G A 280 52.652 127.063 2.325 1.00 84.44 C
ATOM 10 O3' G A 280 51.391 127.621 2.670 1.00 85.76 O
ATOM 11 C2' G A 280 52.893 125.701 2.954 1.00 83.07 C
ATOM 12 O2' G A 280 51.745 124.878 2.941 1.00 82.87 O
ATOM 13 C1' G A 280 53.990 125.146 2.041 1.00 82.11 C
ATOM 14 N9 G A 280 55.312 125.506 2.542 1.00 80.52 N
ATOM 15 C8 G A 280 56.002 126.675 2.311 1.00 79.87 C
ATOM 16 N7 G A 280 57.127 126.746 2.970 1.00 79.92 N
ATOM 17 C5 G A 280 57.198 125.543 3.659 1.00 80.15 C
ATOM 18 C6 G A 280 58.189 125.053 4.557 1.00 79.83 C
ATOM 19 O6 G A 280 59.224 125.610 4.933 1.00 79.62 O
ATOM 20 N1 G A 280 57.870 123.785 5.031 1.00 78.84 N
ATOM 21 C2 G A 280 56.740 123.082 4.692 1.00 78.92 C
ATOM 22 N2 G A 280 56.603 121.878 5.249 1.00 79.07 N
ATOM 23 N3 G A 280 55.805 123.528 3.863 1.00 78.88 N
ATOM 24 C4 G A 280 56.096 124.757 3.389 1.00 79.98 C
ATOM 25 P A A 281 51.229 128.371 4.078 1.00 87.33 P
ATOM 26 OP1 A A 281 49.968 129.166 4.093 1.00 86.85 O
ATOM 27 OP2 A A 281 52.534 129.051 4.333 1.00 86.27 O
ATOM 28 O5' A A 281 51.042 127.175 5.115 1.00 86.24 O
TER
ATOM 1 O3' A B 345 57.049 125.089 12.813 1.00 76.99 O
ATOM 2 P G B 346 58.348 125.528 13.619 1.00 78.67 P
ATOM 3 OP1 G B 346 58.656 124.450 14.604 1.00 79.16 O
ATOM 4 OP2 G B 346 58.057 126.901 14.102 1.00 79.24 O
ATOM 5 O5' G B 346 59.488 125.552 12.502 1.00 80.63 O
ATOM 6 C5' G B 346 59.315 126.321 11.291 1.00 82.29 C
ATOM 7 C4' G B 346 58.844 125.433 10.158 1.00 83.64 C
ATOM 8 O4' G B 346 58.083 126.231 9.199 1.00 83.80 O
ATOM 9 C3' G B 346 59.904 124.684 9.342 1.00 84.13 C
ATOM 10 O3' G B 346 59.300 123.430 8.951 1.00 85.60 O
ATOM 11 C2' G B 346 60.095 125.639 8.160 1.00 83.57 C
ATOM 12 O2' G B 346 60.680 125.075 7.008 1.00 84.10 O
ATOM 13 C1' G B 346 58.645 126.067 7.907 1.00 83.61 C
ATOM 14 N9 G B 346 58.407 127.287 7.133 1.00 83.25 N
ATOM 15 C8 G B 346 59.293 128.308 6.872 1.00 83.36 C
ATOM 16 N7 G B 346 58.756 129.294 6.205 1.00 83.72 N
ATOM 17 C5 G B 346 57.443 128.896 5.997 1.00 83.85 C
ATOM 18 C6 G B 346 56.371 129.572 5.344 1.00 84.76 C
ATOM 19 O6 G B 346 56.372 130.696 4.820 1.00 85.28 O
ATOM 20 N1 G B 346 55.209 128.809 5.351 1.00 85.10 N
ATOM 21 C2 G B 346 55.091 127.560 5.920 1.00 84.68 C
ATOM 22 N2 G B 346 53.883 126.971 5.810 1.00 84.28 N
ATOM 23 N3 G B 346 56.081 126.929 6.547 1.00 83.82 N
ATOM 24 C4 G B 346 57.216 127.651 6.547 1.00 83.23 C
ATOM 25 P U B 347 60.110 122.335 8.069 1.00 86.23 P
ATOM 26 OP1 U B 347 61.488 122.116 8.607 1.00 85.08 O
ATOM 27 OP2 U B 347 59.929 122.693 6.635 1.00 86.32 O
ATOM 28 O5' U B 347 59.269 120.996 8.287 1.00 85.02 O
TER
Atoms:
OP1: (54.099,130.657,-0.847)
OP2: (56.272,130.267,0.468)
C3': (52.652,127.063,2.325)
C1': (53.990,125.146,2.041)
C5': (53.163,127.972,0.010)
O6: (59.224,125.610,4.933)
O4': (53.824,125.752,0.771)
C8: (56.002,126.675,2.311)
C2: (56.740,123.082,4.692)
C6: (58.189,125.053,4.557)
C5: (57.198,125.543,3.659)
C4: (56.096,124.757,3.389)
P: (55.121,129.721,-0.310)
C4': (52.785,126.770,0.844)
C2': (52.893,125.701,2.954)
O2': (51.745,124.878,2.941)
N1: (57.870,123.785,5.031)
N2: (56.603,121.878,5.249)
N3: (55.805,123.528,3.863)
N7: (57.127,126.746,2.970)
N9: (55.312,125.506,2.542)
O5': (54.345,128.620,0.547)
O3': (51.391,127.621,2.670)
OP2: (56.272,130.267,0.468)
C3': (52.652,127.063,2.325)
C1': (53.990,125.146,2.041)
C5': (53.163,127.972,0.010)
O6: (59.224,125.610,4.933)
O4': (53.824,125.752,0.771)
C8: (56.002,126.675,2.311)
C2: (56.740,123.082,4.692)
C6: (58.189,125.053,4.557)
C5: (57.198,125.543,3.659)
C4: (56.096,124.757,3.389)
P: (55.121,129.721,-0.310)
C4': (52.785,126.770,0.844)
C2': (52.893,125.701,2.954)
O2': (51.745,124.878,2.941)
N1: (57.870,123.785,5.031)
N2: (56.603,121.878,5.249)
N3: (55.805,123.528,3.863)
N7: (57.127,126.746,2.970)
N9: (55.312,125.506,2.542)
O5': (54.345,128.620,0.547)
O3': (51.391,127.621,2.670)
OP1: (58.656,124.450,14.604)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
OP2: (58.057,126.901,14.102)
C3': (59.904,124.684,9.342)
C1': (58.645,126.067,7.907)
C5': (59.315,126.321,11.291)
O6: (56.372,130.696,4.820)
O4': (58.083,126.231,9.199)
C8: (59.293,128.308,6.872)
C2: (55.091,127.560,5.920)
C6: (56.371,129.572,5.344)
C5: (57.443,128.896,5.997)
C4: (57.216,127.651,6.547)
P: (58.348,125.528,13.619)
C4': (58.844,125.433,10.158)
C2': (60.095,125.639,8.160)
O2': (60.680,125.075,7.008)
N1: (55.209,128.809,5.351)
N2: (53.883,126.971,5.810)
N3: (56.081,126.929,6.547)
N7: (58.756,129.294,6.205)
N9: (58.407,127.287,7.133)
O5': (59.488,125.552,12.502)
O3': (59.300,123.430,8.951)
Image (generated by PyMOL):