Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ5:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.318 129.235 -1.925 1.00 94.46 O
ATOM 2 P G A 280 54.658 130.014 -0.688 1.00 94.02 P
ATOM 3 OP1 G A 280 53.608 130.917 -1.235 1.00 93.24 O
ATOM 4 OP2 G A 280 55.760 130.582 0.134 1.00 94.37 O
ATOM 5 O5' G A 280 53.943 128.859 0.146 1.00 94.00 O
ATOM 6 C5' G A 280 52.790 128.166 -0.379 1.00 92.71 C
ATOM 7 C4' G A 280 52.408 127.015 0.525 1.00 92.01 C
ATOM 8 O4' G A 280 53.465 126.015 0.521 1.00 91.49 O
ATOM 9 C3' G A 280 52.238 127.357 1.997 1.00 91.95 C
ATOM 10 O3' G A 280 50.978 127.955 2.285 1.00 93.05 O
ATOM 11 C2' G A 280 52.441 126.000 2.658 1.00 91.11 C
ATOM 12 O2' G A 280 51.319 125.148 2.535 1.00 91.25 O
ATOM 13 C1' G A 280 53.585 125.439 1.815 1.00 90.00 C
ATOM 14 N9 G A 280 54.892 125.808 2.353 1.00 88.74 N
ATOM 15 C8 G A 280 55.561 126.997 2.162 1.00 87.97 C
ATOM 16 N7 G A 280 56.715 127.038 2.768 1.00 87.31 N
ATOM 17 C5 G A 280 56.818 125.805 3.397 1.00 87.53 C
ATOM 18 C6 G A 280 57.858 125.269 4.199 1.00 87.26 C
ATOM 19 O6 G A 280 58.934 125.790 4.513 1.00 86.89 O
ATOM 20 N1 G A 280 57.551 123.985 4.642 1.00 86.53 N
ATOM 21 C2 G A 280 56.397 123.301 4.346 1.00 86.09 C
ATOM 22 N2 G A 280 56.289 122.073 4.868 1.00 85.97 N
ATOM 23 N3 G A 280 55.423 123.786 3.594 1.00 86.25 N
ATOM 24 C4 G A 280 55.698 125.034 3.156 1.00 87.69 C
ATOM 25 P A A 281 50.778 128.770 3.661 1.00 93.75 P
ATOM 26 OP1 A A 281 49.502 129.534 3.541 1.00 93.05 O
ATOM 27 OP2 A A 281 52.042 129.496 3.964 1.00 92.68 O
ATOM 28 O5' A A 281 50.610 127.613 4.748 1.00 93.12 O
TER
ATOM 1 O3' A B 345 56.652 125.290 12.517 1.00 84.82 O
ATOM 2 P G B 346 58.008 125.617 13.321 1.00 85.23 P
ATOM 3 OP1 G B 346 58.385 124.425 14.120 1.00 85.10 O
ATOM 4 OP2 G B 346 57.813 126.923 13.994 1.00 86.10 O
ATOM 5 O5' G B 346 59.104 125.786 12.177 1.00 87.24 O
ATOM 6 C5' G B 346 58.819 126.569 11.004 1.00 89.57 C
ATOM 7 C4' G B 346 58.334 125.676 9.882 1.00 90.32 C
ATOM 8 O4' G B 346 57.583 126.477 8.930 1.00 89.83 O
ATOM 9 C3' G B 346 59.393 124.934 9.064 1.00 90.69 C
ATOM 10 O3' G B 346 58.795 123.701 8.618 1.00 92.05 O
ATOM 11 C2' G B 346 59.611 125.910 7.909 1.00 90.12 C
ATOM 12 O2' G B 346 60.180 125.346 6.748 1.00 91.14 O
ATOM 13 C1' G B 346 58.174 126.359 7.653 1.00 89.83 C
ATOM 14 N9 G B 346 57.974 127.618 6.943 1.00 88.87 N
ATOM 15 C8 G B 346 58.872 128.643 6.754 1.00 89.00 C
ATOM 16 N7 G B 346 58.366 129.649 6.094 1.00 88.85 N
ATOM 17 C5 G B 346 57.058 129.261 5.828 1.00 88.63 C
ATOM 18 C6 G B 346 56.019 129.942 5.146 1.00 88.70 C
ATOM 19 O6 G B 346 56.046 131.064 4.625 1.00 89.78 O
ATOM 20 N1 G B 346 54.852 129.182 5.103 1.00 88.44 N
ATOM 21 C2 G B 346 54.703 127.928 5.648 1.00 87.49 C
ATOM 22 N2 G B 346 53.498 127.355 5.502 1.00 85.96 N
ATOM 23 N3 G B 346 55.664 127.286 6.287 1.00 87.10 N
ATOM 24 C4 G B 346 56.806 128.007 6.339 1.00 88.26 C
ATOM 25 P U B 347 59.677 122.581 7.857 1.00 91.92 P
ATOM 26 OP1 U B 347 60.977 122.395 8.557 1.00 92.53 O
ATOM 27 OP2 U B 347 59.664 122.900 6.407 1.00 92.97 O
ATOM 28 O5' U B 347 58.815 121.251 8.020 1.00 91.29 O
TER
ATOM 2 P G A 280 54.658 130.014 -0.688 1.00 94.02 P
ATOM 3 OP1 G A 280 53.608 130.917 -1.235 1.00 93.24 O
ATOM 4 OP2 G A 280 55.760 130.582 0.134 1.00 94.37 O
ATOM 5 O5' G A 280 53.943 128.859 0.146 1.00 94.00 O
ATOM 6 C5' G A 280 52.790 128.166 -0.379 1.00 92.71 C
ATOM 7 C4' G A 280 52.408 127.015 0.525 1.00 92.01 C
ATOM 8 O4' G A 280 53.465 126.015 0.521 1.00 91.49 O
ATOM 9 C3' G A 280 52.238 127.357 1.997 1.00 91.95 C
ATOM 10 O3' G A 280 50.978 127.955 2.285 1.00 93.05 O
ATOM 11 C2' G A 280 52.441 126.000 2.658 1.00 91.11 C
ATOM 12 O2' G A 280 51.319 125.148 2.535 1.00 91.25 O
ATOM 13 C1' G A 280 53.585 125.439 1.815 1.00 90.00 C
ATOM 14 N9 G A 280 54.892 125.808 2.353 1.00 88.74 N
ATOM 15 C8 G A 280 55.561 126.997 2.162 1.00 87.97 C
ATOM 16 N7 G A 280 56.715 127.038 2.768 1.00 87.31 N
ATOM 17 C5 G A 280 56.818 125.805 3.397 1.00 87.53 C
ATOM 18 C6 G A 280 57.858 125.269 4.199 1.00 87.26 C
ATOM 19 O6 G A 280 58.934 125.790 4.513 1.00 86.89 O
ATOM 20 N1 G A 280 57.551 123.985 4.642 1.00 86.53 N
ATOM 21 C2 G A 280 56.397 123.301 4.346 1.00 86.09 C
ATOM 22 N2 G A 280 56.289 122.073 4.868 1.00 85.97 N
ATOM 23 N3 G A 280 55.423 123.786 3.594 1.00 86.25 N
ATOM 24 C4 G A 280 55.698 125.034 3.156 1.00 87.69 C
ATOM 25 P A A 281 50.778 128.770 3.661 1.00 93.75 P
ATOM 26 OP1 A A 281 49.502 129.534 3.541 1.00 93.05 O
ATOM 27 OP2 A A 281 52.042 129.496 3.964 1.00 92.68 O
ATOM 28 O5' A A 281 50.610 127.613 4.748 1.00 93.12 O
TER
ATOM 1 O3' A B 345 56.652 125.290 12.517 1.00 84.82 O
ATOM 2 P G B 346 58.008 125.617 13.321 1.00 85.23 P
ATOM 3 OP1 G B 346 58.385 124.425 14.120 1.00 85.10 O
ATOM 4 OP2 G B 346 57.813 126.923 13.994 1.00 86.10 O
ATOM 5 O5' G B 346 59.104 125.786 12.177 1.00 87.24 O
ATOM 6 C5' G B 346 58.819 126.569 11.004 1.00 89.57 C
ATOM 7 C4' G B 346 58.334 125.676 9.882 1.00 90.32 C
ATOM 8 O4' G B 346 57.583 126.477 8.930 1.00 89.83 O
ATOM 9 C3' G B 346 59.393 124.934 9.064 1.00 90.69 C
ATOM 10 O3' G B 346 58.795 123.701 8.618 1.00 92.05 O
ATOM 11 C2' G B 346 59.611 125.910 7.909 1.00 90.12 C
ATOM 12 O2' G B 346 60.180 125.346 6.748 1.00 91.14 O
ATOM 13 C1' G B 346 58.174 126.359 7.653 1.00 89.83 C
ATOM 14 N9 G B 346 57.974 127.618 6.943 1.00 88.87 N
ATOM 15 C8 G B 346 58.872 128.643 6.754 1.00 89.00 C
ATOM 16 N7 G B 346 58.366 129.649 6.094 1.00 88.85 N
ATOM 17 C5 G B 346 57.058 129.261 5.828 1.00 88.63 C
ATOM 18 C6 G B 346 56.019 129.942 5.146 1.00 88.70 C
ATOM 19 O6 G B 346 56.046 131.064 4.625 1.00 89.78 O
ATOM 20 N1 G B 346 54.852 129.182 5.103 1.00 88.44 N
ATOM 21 C2 G B 346 54.703 127.928 5.648 1.00 87.49 C
ATOM 22 N2 G B 346 53.498 127.355 5.502 1.00 85.96 N
ATOM 23 N3 G B 346 55.664 127.286 6.287 1.00 87.10 N
ATOM 24 C4 G B 346 56.806 128.007 6.339 1.00 88.26 C
ATOM 25 P U B 347 59.677 122.581 7.857 1.00 91.92 P
ATOM 26 OP1 U B 347 60.977 122.395 8.557 1.00 92.53 O
ATOM 27 OP2 U B 347 59.664 122.900 6.407 1.00 92.97 O
ATOM 28 O5' U B 347 58.815 121.251 8.020 1.00 91.29 O
TER
Atoms:
OP1: (53.608,130.917,-1.235)
OP2: (55.760,130.582,0.134)
C3': (52.238,127.357,1.997)
C1': (53.585,125.439,1.815)
C5': (52.790,128.166,-0.379)
O6: (58.934,125.790,4.513)
O4': (53.465,126.015,0.521)
C8: (55.561,126.997,2.162)
C2: (56.397,123.301,4.346)
C6: (57.858,125.269,4.199)
C5: (56.818,125.805,3.397)
C4: (55.698,125.034,3.156)
P: (54.658,130.014,-0.688)
C4': (52.408,127.015,0.525)
C2': (52.441,126.000,2.658)
O2': (51.319,125.148,2.535)
N1: (57.551,123.985,4.642)
N2: (56.289,122.073,4.868)
N3: (55.423,123.786,3.594)
N7: (56.715,127.038,2.768)
N9: (54.892,125.808,2.353)
O5': (53.943,128.859,0.146)
O3': (50.978,127.955,2.285)
OP2: (55.760,130.582,0.134)
C3': (52.238,127.357,1.997)
C1': (53.585,125.439,1.815)
C5': (52.790,128.166,-0.379)
O6: (58.934,125.790,4.513)
O4': (53.465,126.015,0.521)
C8: (55.561,126.997,2.162)
C2: (56.397,123.301,4.346)
C6: (57.858,125.269,4.199)
C5: (56.818,125.805,3.397)
C4: (55.698,125.034,3.156)
P: (54.658,130.014,-0.688)
C4': (52.408,127.015,0.525)
C2': (52.441,126.000,2.658)
O2': (51.319,125.148,2.535)
N1: (57.551,123.985,4.642)
N2: (56.289,122.073,4.868)
N3: (55.423,123.786,3.594)
N7: (56.715,127.038,2.768)
N9: (54.892,125.808,2.353)
O5': (53.943,128.859,0.146)
O3': (50.978,127.955,2.285)
OP1: (58.385,124.425,14.120)
OP2: (57.813,126.923,13.994)
C3': (59.393,124.934,9.064)
C1': (58.174,126.359,7.653)
C5': (58.819,126.569,11.004)
O6: (56.046,131.064,4.625)
O4': (57.583,126.477,8.930)
C8: (58.872,128.643,6.754)
C2: (54.703,127.928,5.648)
C6: (56.019,129.942,5.146)
C5: (57.058,129.261,5.828)
C4: (56.806,128.007,6.339)
P: (58.008,125.617,13.321)
C4': (58.334,125.676,9.882)
C2': (59.611,125.910,7.909)
O2': (60.180,125.346,6.748)
N1: (54.852,129.182,5.103)
N2: (53.498,127.355,5.502)
N3: (55.664,127.286,6.287)
N7: (58.366,129.649,6.094)
N9: (57.974,127.618,6.943)
O5': (59.104,125.786,12.177)
O3': (58.795,123.701,8.618)
OP2: (57.813,126.923,13.994)
C3': (59.393,124.934,9.064)
C1': (58.174,126.359,7.653)
C5': (58.819,126.569,11.004)
O6: (56.046,131.064,4.625)
O4': (57.583,126.477,8.930)
C8: (58.872,128.643,6.754)
C2: (54.703,127.928,5.648)
C6: (56.019,129.942,5.146)
C5: (57.058,129.261,5.828)
C4: (56.806,128.007,6.339)
P: (58.008,125.617,13.321)
C4': (58.334,125.676,9.882)
C2': (59.611,125.910,7.909)
O2': (60.180,125.346,6.748)
N1: (54.852,129.182,5.103)
N2: (53.498,127.355,5.502)
N3: (55.664,127.286,6.287)
N7: (58.366,129.649,6.094)
N9: (57.974,127.618,6.943)
O5': (59.104,125.786,12.177)
O3': (58.795,123.701,8.618)
Image (generated by PyMOL):