Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.501 128.899 -1.885 1.00 82.08 O
ATOM 2 P G A 280 54.874 129.740 -0.671 1.00 83.07 P
ATOM 3 OP1 G A 280 53.870 130.682 -1.243 1.00 82.10 O
ATOM 4 OP2 G A 280 56.005 130.275 0.134 1.00 83.17 O
ATOM 5 O5' G A 280 54.096 128.644 0.189 1.00 82.36 O
ATOM 6 C5' G A 280 52.938 127.963 -0.344 1.00 81.01 C
ATOM 7 C4' G A 280 52.575 126.779 0.526 1.00 80.47 C
ATOM 8 O4' G A 280 53.639 125.787 0.474 1.00 79.98 O
ATOM 9 C3' G A 280 52.422 127.080 2.008 1.00 80.40 C
ATOM 10 O3' G A 280 51.150 127.638 2.320 1.00 82.51 O
ATOM 11 C2' G A 280 52.670 125.715 2.638 1.00 78.96 C
ATOM 12 O2' G A 280 51.563 124.841 2.544 1.00 78.56 O
ATOM 13 C1' G A 280 53.802 125.189 1.753 1.00 77.85 C
ATOM 14 N9 G A 280 55.115 125.568 2.269 1.00 76.26 N
ATOM 15 C8 G A 280 55.796 126.740 2.024 1.00 75.08 C
ATOM 16 N7 G A 280 56.941 126.809 2.647 1.00 74.65 N
ATOM 17 C5 G A 280 57.027 125.608 3.341 1.00 74.69 C
ATOM 18 C6 G A 280 58.047 125.113 4.197 1.00 73.92 C
ATOM 19 O6 G A 280 59.113 125.651 4.515 1.00 74.26 O
ATOM 20 N1 G A 280 57.728 123.854 4.696 1.00 72.75 N
ATOM 21 C2 G A 280 56.578 123.158 4.408 1.00 73.07 C
ATOM 22 N2 G A 280 56.452 121.957 4.988 1.00 73.03 N
ATOM 23 N3 G A 280 55.622 123.606 3.609 1.00 73.11 N
ATOM 24 C4 G A 280 55.910 124.829 3.115 1.00 74.97 C
ATOM 25 P A A 281 50.958 128.467 3.687 1.00 84.79 P
ATOM 26 OP1 A A 281 49.658 129.190 3.587 1.00 84.21 O
ATOM 27 OP2 A A 281 52.205 129.234 3.959 1.00 83.37 O
ATOM 28 O5' A A 281 50.828 127.329 4.797 1.00 83.83 O
TER
ATOM 1 O3' A B 345 56.965 125.186 12.546 1.00 75.09 O
ATOM 2 P G B 346 58.354 125.497 13.290 1.00 75.86 P
ATOM 3 OP1 G B 346 58.751 124.296 14.062 1.00 76.20 O
ATOM 4 OP2 G B 346 58.212 126.803 13.980 1.00 75.96 O
ATOM 5 O5' G B 346 59.399 125.643 12.097 1.00 77.76 O
ATOM 6 C5' G B 346 59.053 126.377 10.909 1.00 78.77 C
ATOM 7 C4' G B 346 58.607 125.429 9.817 1.00 79.33 C
ATOM 8 O4' G B 346 57.815 126.161 8.845 1.00 78.89 O
ATOM 9 C3' G B 346 59.697 124.719 9.017 1.00 79.29 C
ATOM 10 O3' G B 346 59.127 123.464 8.595 1.00 80.55 O
ATOM 11 C2' G B 346 59.887 125.693 7.855 1.00 79.11 C
ATOM 12 O2' G B 346 60.507 125.156 6.705 1.00 80.31 O
ATOM 13 C1' G B 346 58.434 126.081 7.579 1.00 79.22 C
ATOM 14 N9 G B 346 58.200 127.342 6.886 1.00 78.83 N
ATOM 15 C8 G B 346 59.063 128.403 6.736 1.00 79.84 C
ATOM 16 N7 G B 346 58.538 129.401 6.078 1.00 80.06 N
ATOM 17 C5 G B 346 57.255 128.970 5.771 1.00 79.66 C
ATOM 18 C6 G B 346 56.212 129.623 5.070 1.00 80.10 C
ATOM 19 O6 G B 346 56.214 130.754 4.564 1.00 81.51 O
ATOM 20 N1 G B 346 55.075 128.823 4.986 1.00 79.60 N
ATOM 21 C2 G B 346 54.955 127.559 5.511 1.00 78.26 C
ATOM 22 N2 G B 346 53.775 126.949 5.328 1.00 76.65 N
ATOM 23 N3 G B 346 55.920 126.940 6.166 1.00 77.99 N
ATOM 24 C4 G B 346 57.034 127.700 6.258 1.00 78.76 C
ATOM 25 P U B 347 60.020 122.365 7.820 1.00 80.97 P
ATOM 26 OP1 U B 347 61.353 122.216 8.472 1.00 80.71 O
ATOM 27 OP2 U B 347 59.943 122.689 6.370 1.00 81.94 O
ATOM 28 O5' U B 347 59.196 121.012 8.013 1.00 80.48 O
TER
ATOM 2 P G A 280 54.874 129.740 -0.671 1.00 83.07 P
ATOM 3 OP1 G A 280 53.870 130.682 -1.243 1.00 82.10 O
ATOM 4 OP2 G A 280 56.005 130.275 0.134 1.00 83.17 O
ATOM 5 O5' G A 280 54.096 128.644 0.189 1.00 82.36 O
ATOM 6 C5' G A 280 52.938 127.963 -0.344 1.00 81.01 C
ATOM 7 C4' G A 280 52.575 126.779 0.526 1.00 80.47 C
ATOM 8 O4' G A 280 53.639 125.787 0.474 1.00 79.98 O
ATOM 9 C3' G A 280 52.422 127.080 2.008 1.00 80.40 C
ATOM 10 O3' G A 280 51.150 127.638 2.320 1.00 82.51 O
ATOM 11 C2' G A 280 52.670 125.715 2.638 1.00 78.96 C
ATOM 12 O2' G A 280 51.563 124.841 2.544 1.00 78.56 O
ATOM 13 C1' G A 280 53.802 125.189 1.753 1.00 77.85 C
ATOM 14 N9 G A 280 55.115 125.568 2.269 1.00 76.26 N
ATOM 15 C8 G A 280 55.796 126.740 2.024 1.00 75.08 C
ATOM 16 N7 G A 280 56.941 126.809 2.647 1.00 74.65 N
ATOM 17 C5 G A 280 57.027 125.608 3.341 1.00 74.69 C
ATOM 18 C6 G A 280 58.047 125.113 4.197 1.00 73.92 C
ATOM 19 O6 G A 280 59.113 125.651 4.515 1.00 74.26 O
ATOM 20 N1 G A 280 57.728 123.854 4.696 1.00 72.75 N
ATOM 21 C2 G A 280 56.578 123.158 4.408 1.00 73.07 C
ATOM 22 N2 G A 280 56.452 121.957 4.988 1.00 73.03 N
ATOM 23 N3 G A 280 55.622 123.606 3.609 1.00 73.11 N
ATOM 24 C4 G A 280 55.910 124.829 3.115 1.00 74.97 C
ATOM 25 P A A 281 50.958 128.467 3.687 1.00 84.79 P
ATOM 26 OP1 A A 281 49.658 129.190 3.587 1.00 84.21 O
ATOM 27 OP2 A A 281 52.205 129.234 3.959 1.00 83.37 O
ATOM 28 O5' A A 281 50.828 127.329 4.797 1.00 83.83 O
TER
ATOM 1 O3' A B 345 56.965 125.186 12.546 1.00 75.09 O
ATOM 2 P G B 346 58.354 125.497 13.290 1.00 75.86 P
ATOM 3 OP1 G B 346 58.751 124.296 14.062 1.00 76.20 O
ATOM 4 OP2 G B 346 58.212 126.803 13.980 1.00 75.96 O
ATOM 5 O5' G B 346 59.399 125.643 12.097 1.00 77.76 O
ATOM 6 C5' G B 346 59.053 126.377 10.909 1.00 78.77 C
ATOM 7 C4' G B 346 58.607 125.429 9.817 1.00 79.33 C
ATOM 8 O4' G B 346 57.815 126.161 8.845 1.00 78.89 O
ATOM 9 C3' G B 346 59.697 124.719 9.017 1.00 79.29 C
ATOM 10 O3' G B 346 59.127 123.464 8.595 1.00 80.55 O
ATOM 11 C2' G B 346 59.887 125.693 7.855 1.00 79.11 C
ATOM 12 O2' G B 346 60.507 125.156 6.705 1.00 80.31 O
ATOM 13 C1' G B 346 58.434 126.081 7.579 1.00 79.22 C
ATOM 14 N9 G B 346 58.200 127.342 6.886 1.00 78.83 N
ATOM 15 C8 G B 346 59.063 128.403 6.736 1.00 79.84 C
ATOM 16 N7 G B 346 58.538 129.401 6.078 1.00 80.06 N
ATOM 17 C5 G B 346 57.255 128.970 5.771 1.00 79.66 C
ATOM 18 C6 G B 346 56.212 129.623 5.070 1.00 80.10 C
ATOM 19 O6 G B 346 56.214 130.754 4.564 1.00 81.51 O
ATOM 20 N1 G B 346 55.075 128.823 4.986 1.00 79.60 N
ATOM 21 C2 G B 346 54.955 127.559 5.511 1.00 78.26 C
ATOM 22 N2 G B 346 53.775 126.949 5.328 1.00 76.65 N
ATOM 23 N3 G B 346 55.920 126.940 6.166 1.00 77.99 N
ATOM 24 C4 G B 346 57.034 127.700 6.258 1.00 78.76 C
ATOM 25 P U B 347 60.020 122.365 7.820 1.00 80.97 P
ATOM 26 OP1 U B 347 61.353 122.216 8.472 1.00 80.71 O
ATOM 27 OP2 U B 347 59.943 122.689 6.370 1.00 81.94 O
ATOM 28 O5' U B 347 59.196 121.012 8.013 1.00 80.48 O
TER
Atoms:
OP1: (53.870,130.682,-1.243)
OP2: (56.005,130.275,0.134)
C3': (52.422,127.080,2.008)
C1': (53.802,125.189,1.753)
C5': (52.938,127.963,-0.344)
O6: (59.113,125.651,4.515)
O4': (53.639,125.787,0.474)
C8: (55.796,126.740,2.024)
C2: (56.578,123.158,4.408)
C6: (58.047,125.113,4.197)
C5: (57.027,125.608,3.341)
C4: (55.910,124.829,3.115)
P: (54.874,129.740,-0.671)
C4': (52.575,126.779,0.526)
C2': (52.670,125.715,2.638)
O2': (51.563,124.841,2.544)
N1: (57.728,123.854,4.696)
N2: (56.452,121.957,4.988)
N3: (55.622,123.606,3.609)
N7: (56.941,126.809,2.647)
N9: (55.115,125.568,2.269)
O5': (54.096,128.644,0.189)
O3': (51.150,127.638,2.320)
OP2: (56.005,130.275,0.134)
C3': (52.422,127.080,2.008)
C1': (53.802,125.189,1.753)
C5': (52.938,127.963,-0.344)
O6: (59.113,125.651,4.515)
O4': (53.639,125.787,0.474)
C8: (55.796,126.740,2.024)
C2: (56.578,123.158,4.408)
C6: (58.047,125.113,4.197)
C5: (57.027,125.608,3.341)
C4: (55.910,124.829,3.115)
P: (54.874,129.740,-0.671)
C4': (52.575,126.779,0.526)
C2': (52.670,125.715,2.638)
O2': (51.563,124.841,2.544)
N1: (57.728,123.854,4.696)
N2: (56.452,121.957,4.988)
N3: (55.622,123.606,3.609)
N7: (56.941,126.809,2.647)
N9: (55.115,125.568,2.269)
O5': (54.096,128.644,0.189)
O3': (51.150,127.638,2.320)
OP1: (58.751,124.296,14.062)
OP2: (58.212,126.803,13.980)
C3': (59.697,124.719,9.017)
C1': (58.434,126.081,7.579)
C5': (59.053,126.377,10.909)
O6: (56.214,130.754,4.564)
O4': (57.815,126.161,8.845)
C8: (59.063,128.403,6.736)
C2: (54.955,127.559,5.511)
C6: (56.212,129.623,5.070)
C5: (57.255,128.970,5.771)
C4: (57.034,127.700,6.258)
P: (58.354,125.497,13.290)
C4': (58.607,125.429,9.817)
C2': (59.887,125.693,7.855)
O2': (60.507,125.156,6.705)
N1: (55.075,128.823,4.986)
N2: (53.775,126.949,5.328)
N3: (55.920,126.940,6.166)
N7: (58.538,129.401,6.078)
N9: (58.200,127.342,6.886)
O5': (59.399,125.643,12.097)
O3': (59.127,123.464,8.595)
OP2: (58.212,126.803,13.980)
C3': (59.697,124.719,9.017)
C1': (58.434,126.081,7.579)
C5': (59.053,126.377,10.909)
O6: (56.214,130.754,4.564)
O4': (57.815,126.161,8.845)
C8: (59.063,128.403,6.736)
C2: (54.955,127.559,5.511)
C6: (56.212,129.623,5.070)
C5: (57.255,128.970,5.771)
C4: (57.034,127.700,6.258)
P: (58.354,125.497,13.290)
C4': (58.607,125.429,9.817)
C2': (59.887,125.693,7.855)
O2': (60.507,125.156,6.705)
N1: (55.075,128.823,4.986)
N2: (53.775,126.949,5.328)
N3: (55.920,126.940,6.166)
N7: (58.538,129.401,6.078)
N9: (58.200,127.342,6.886)
O5': (59.399,125.643,12.097)
O3': (59.127,123.464,8.595)
Image (generated by PyMOL):