Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.400 129.077 -1.902 1.00 75.04 O
ATOM 2 P G A 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 3 OP1 G A 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 4 OP2 G A 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 5 O5' G A 280 54.028 128.814 0.187 1.00 75.09 O
ATOM 6 C5' G A 280 52.842 128.173 -0.326 1.00 74.08 C
ATOM 7 C4' G A 280 52.469 126.990 0.538 1.00 73.50 C
ATOM 8 O4' G A 280 53.527 125.994 0.474 1.00 73.31 O
ATOM 9 C3' G A 280 52.328 127.280 2.023 1.00 72.97 C
ATOM 10 O3' G A 280 51.061 127.844 2.346 1.00 74.18 O
ATOM 11 C2' G A 280 52.561 125.906 2.634 1.00 71.79 C
ATOM 12 O2' G A 280 51.447 125.046 2.511 1.00 71.40 O
ATOM 13 C1' G A 280 53.688 125.381 1.744 1.00 70.98 C
ATOM 14 N9 G A 280 55.007 125.740 2.258 1.00 69.41 N
ATOM 15 C8 G A 280 55.701 126.906 2.026 1.00 68.48 C
ATOM 16 N7 G A 280 56.848 126.952 2.646 1.00 68.31 N
ATOM 17 C5 G A 280 56.923 125.742 3.323 1.00 68.22 C
ATOM 18 C6 G A 280 57.940 125.221 4.170 1.00 67.98 C
ATOM 19 O6 G A 280 59.012 125.744 4.499 1.00 68.38 O
ATOM 20 N1 G A 280 57.608 123.958 4.650 1.00 66.57 N
ATOM 21 C2 G A 280 56.450 123.281 4.352 1.00 66.74 C
ATOM 22 N2 G A 280 56.310 122.075 4.910 1.00 66.66 N
ATOM 23 N3 G A 280 55.497 123.753 3.564 1.00 66.65 N
ATOM 24 C4 G A 280 55.797 124.979 3.089 1.00 68.26 C
ATOM 25 P A A 281 50.873 128.638 3.733 1.00 76.61 P
ATOM 26 OP1 A A 281 49.577 129.370 3.667 1.00 75.54 O
ATOM 27 OP2 A A 281 52.126 129.390 4.020 1.00 75.26 O
ATOM 28 O5' A A 281 50.743 127.470 4.811 1.00 75.35 O
TER
ATOM 1 O3' A B 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 2 P G B 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 3 OP1 G B 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 4 OP2 G B 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 5 O5' G B 346 59.178 125.742 12.055 1.00 69.26 O
ATOM 6 C5' G B 346 58.808 126.491 10.884 1.00 71.29 C
ATOM 7 C4' G B 346 58.399 125.554 9.768 1.00 72.42 C
ATOM 8 O4' G B 346 57.628 126.288 8.781 1.00 72.25 O
ATOM 9 C3' G B 346 59.515 124.861 8.990 1.00 72.64 C
ATOM 10 O3' G B 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 11 C2' G B 346 59.722 125.837 7.834 1.00 72.31 C
ATOM 12 O2' G B 346 60.360 125.289 6.700 1.00 73.77 O
ATOM 13 C1' G B 346 58.272 126.209 7.527 1.00 72.29 C
ATOM 14 N9 G B 346 58.030 127.464 6.825 1.00 71.65 N
ATOM 15 C8 G B 346 58.890 128.523 6.645 1.00 72.25 C
ATOM 16 N7 G B 346 58.347 129.517 5.996 1.00 72.09 N
ATOM 17 C5 G B 346 57.056 129.084 5.727 1.00 71.87 C
ATOM 18 C6 G B 346 55.993 129.732 5.054 1.00 72.45 C
ATOM 19 O6 G B 346 55.978 130.862 4.547 1.00 74.29 O
ATOM 20 N1 G B 346 54.856 128.929 5.002 1.00 72.01 N
ATOM 21 C2 G B 346 54.754 127.666 5.532 1.00 70.18 C
ATOM 22 N2 G B 346 53.573 127.049 5.380 1.00 68.81 N
ATOM 23 N3 G B 346 55.737 127.053 6.164 1.00 69.41 N
ATOM 24 C4 G B 346 56.850 127.816 6.224 1.00 70.98 C
ATOM 25 P U B 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 26 OP1 U B 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 27 OP2 U B 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 28 O5' U B 347 59.109 121.143 8.040 1.00 74.63 O
TER
ATOM 2 P G A 280 54.802 129.911 -0.670 1.00 75.21 P
ATOM 3 OP1 G A 280 53.798 130.866 -1.219 1.00 74.83 O
ATOM 4 OP2 G A 280 55.946 130.426 0.127 1.00 74.86 O
ATOM 5 O5' G A 280 54.028 128.814 0.187 1.00 75.09 O
ATOM 6 C5' G A 280 52.842 128.173 -0.326 1.00 74.08 C
ATOM 7 C4' G A 280 52.469 126.990 0.538 1.00 73.50 C
ATOM 8 O4' G A 280 53.527 125.994 0.474 1.00 73.31 O
ATOM 9 C3' G A 280 52.328 127.280 2.023 1.00 72.97 C
ATOM 10 O3' G A 280 51.061 127.844 2.346 1.00 74.18 O
ATOM 11 C2' G A 280 52.561 125.906 2.634 1.00 71.79 C
ATOM 12 O2' G A 280 51.447 125.046 2.511 1.00 71.40 O
ATOM 13 C1' G A 280 53.688 125.381 1.744 1.00 70.98 C
ATOM 14 N9 G A 280 55.007 125.740 2.258 1.00 69.41 N
ATOM 15 C8 G A 280 55.701 126.906 2.026 1.00 68.48 C
ATOM 16 N7 G A 280 56.848 126.952 2.646 1.00 68.31 N
ATOM 17 C5 G A 280 56.923 125.742 3.323 1.00 68.22 C
ATOM 18 C6 G A 280 57.940 125.221 4.170 1.00 67.98 C
ATOM 19 O6 G A 280 59.012 125.744 4.499 1.00 68.38 O
ATOM 20 N1 G A 280 57.608 123.958 4.650 1.00 66.57 N
ATOM 21 C2 G A 280 56.450 123.281 4.352 1.00 66.74 C
ATOM 22 N2 G A 280 56.310 122.075 4.910 1.00 66.66 N
ATOM 23 N3 G A 280 55.497 123.753 3.564 1.00 66.65 N
ATOM 24 C4 G A 280 55.797 124.979 3.089 1.00 68.26 C
ATOM 25 P A A 281 50.873 128.638 3.733 1.00 76.61 P
ATOM 26 OP1 A A 281 49.577 129.370 3.667 1.00 75.54 O
ATOM 27 OP2 A A 281 52.126 129.390 4.020 1.00 75.26 O
ATOM 28 O5' A A 281 50.743 127.470 4.811 1.00 75.35 O
TER
ATOM 1 O3' A B 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 2 P G B 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 3 OP1 G B 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 4 OP2 G B 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 5 O5' G B 346 59.178 125.742 12.055 1.00 69.26 O
ATOM 6 C5' G B 346 58.808 126.491 10.884 1.00 71.29 C
ATOM 7 C4' G B 346 58.399 125.554 9.768 1.00 72.42 C
ATOM 8 O4' G B 346 57.628 126.288 8.781 1.00 72.25 O
ATOM 9 C3' G B 346 59.515 124.861 8.990 1.00 72.64 C
ATOM 10 O3' G B 346 58.967 123.610 8.542 1.00 74.11 O
ATOM 11 C2' G B 346 59.722 125.837 7.834 1.00 72.31 C
ATOM 12 O2' G B 346 60.360 125.289 6.700 1.00 73.77 O
ATOM 13 C1' G B 346 58.272 126.209 7.527 1.00 72.29 C
ATOM 14 N9 G B 346 58.030 127.464 6.825 1.00 71.65 N
ATOM 15 C8 G B 346 58.890 128.523 6.645 1.00 72.25 C
ATOM 16 N7 G B 346 58.347 129.517 5.996 1.00 72.09 N
ATOM 17 C5 G B 346 57.056 129.084 5.727 1.00 71.87 C
ATOM 18 C6 G B 346 55.993 129.732 5.054 1.00 72.45 C
ATOM 19 O6 G B 346 55.978 130.862 4.547 1.00 74.29 O
ATOM 20 N1 G B 346 54.856 128.929 5.002 1.00 72.01 N
ATOM 21 C2 G B 346 54.754 127.666 5.532 1.00 70.18 C
ATOM 22 N2 G B 346 53.573 127.049 5.380 1.00 68.81 N
ATOM 23 N3 G B 346 55.737 127.053 6.164 1.00 69.41 N
ATOM 24 C4 G B 346 56.850 127.816 6.224 1.00 70.98 C
ATOM 25 P U B 347 59.901 122.510 7.826 1.00 74.72 P
ATOM 26 OP1 U B 347 61.219 122.424 8.516 1.00 75.28 O
ATOM 27 OP2 U B 347 59.851 122.786 6.365 1.00 76.15 O
ATOM 28 O5' U B 347 59.109 121.143 8.040 1.00 74.63 O
TER
Atoms:
OP1: (53.798,130.866,-1.219)
OP2: (55.946,130.426,0.127)
C3': (52.328,127.280,2.023)
C1': (53.688,125.381,1.744)
C5': (52.842,128.173,-0.326)
O6: (59.012,125.744,4.499)
O4': (53.527,125.994,0.474)
C8: (55.701,126.906,2.026)
C2: (56.450,123.281,4.352)
C6: (57.940,125.221,4.170)
C5: (56.923,125.742,3.323)
C4: (55.797,124.979,3.089)
P: (54.802,129.911,-0.670)
C4': (52.469,126.990,0.538)
C2': (52.561,125.906,2.634)
O2': (51.447,125.046,2.511)
N1: (57.608,123.958,4.650)
N2: (56.310,122.075,4.910)
N3: (55.497,123.753,3.564)
N7: (56.848,126.952,2.646)
N9: (55.007,125.740,2.258)
O5': (54.028,128.814,0.187)
O3': (51.061,127.844,2.346)
OP2: (55.946,130.426,0.127)
C3': (52.328,127.280,2.023)
C1': (53.688,125.381,1.744)
C5': (52.842,128.173,-0.326)
O6: (59.012,125.744,4.499)
O4': (53.527,125.994,0.474)
C8: (55.701,126.906,2.026)
C2: (56.450,123.281,4.352)
C6: (57.940,125.221,4.170)
C5: (56.923,125.742,3.323)
C4: (55.797,124.979,3.089)
P: (54.802,129.911,-0.670)
C4': (52.469,126.990,0.538)
C2': (52.561,125.906,2.634)
O2': (51.447,125.046,2.511)
N1: (57.608,123.958,4.650)
N2: (56.310,122.075,4.910)
N3: (55.497,123.753,3.564)
N7: (56.848,126.952,2.646)
N9: (55.007,125.740,2.258)
O5': (54.028,128.814,0.187)
O3': (51.061,127.844,2.346)
OP1: (58.563,124.375,14.015)
OP2: (58.089,126.893,14.003)
C3': (59.515,124.861,8.990)
C1': (58.272,126.209,7.527)
C5': (58.808,126.491,10.884)
O6: (55.978,130.862,4.547)
O4': (57.628,126.288,8.781)
C8: (58.890,128.523,6.645)
C2: (54.754,127.666,5.532)
C6: (55.993,129.732,5.054)
C5: (57.056,129.084,5.727)
C4: (56.850,127.816,6.224)
P: (58.172,125.601,13.283)
C4': (58.399,125.554,9.768)
C2': (59.722,125.837,7.834)
O2': (60.360,125.289,6.700)
N1: (54.856,128.929,5.002)
N2: (53.573,127.049,5.380)
N3: (55.737,127.053,6.164)
N7: (58.347,129.517,5.996)
N9: (58.030,127.464,6.825)
O5': (59.178,125.742,12.055)
O3': (58.967,123.610,8.542)
OP2: (58.089,126.893,14.003)
C3': (59.515,124.861,8.990)
C1': (58.272,126.209,7.527)
C5': (58.808,126.491,10.884)
O6: (55.978,130.862,4.547)
O4': (57.628,126.288,8.781)
C8: (58.890,128.523,6.645)
C2: (54.754,127.666,5.532)
C6: (55.993,129.732,5.054)
C5: (57.056,129.084,5.727)
C4: (56.850,127.816,6.224)
P: (58.172,125.601,13.283)
C4': (58.399,125.554,9.768)
C2': (59.722,125.837,7.834)
O2': (60.360,125.289,6.700)
N1: (54.856,128.929,5.002)
N2: (53.573,127.049,5.380)
N3: (55.737,127.053,6.164)
N7: (58.347,129.517,5.996)
N9: (58.030,127.464,6.825)
O5': (59.178,125.742,12.055)
O3': (58.967,123.610,8.542)
Image (generated by PyMOL):