Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.467 128.830 -1.808 1.00 79.42 O
ATOM 2 P G A 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 3 OP1 G A 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 4 OP2 G A 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 5 O5' G A 280 54.121 128.532 0.288 1.00 79.25 O
ATOM 6 C5' G A 280 52.942 127.895 -0.244 1.00 77.82 C
ATOM 7 C4' G A 280 52.575 126.689 0.590 1.00 76.80 C
ATOM 8 O4' G A 280 53.639 125.702 0.507 1.00 76.42 O
ATOM 9 C3' G A 280 52.430 126.942 2.080 1.00 75.94 C
ATOM 10 O3' G A 280 51.168 127.498 2.427 1.00 77.31 O
ATOM 11 C2' G A 280 52.663 125.556 2.662 1.00 75.15 C
ATOM 12 O2' G A 280 51.542 124.705 2.536 1.00 73.65 O
ATOM 13 C1' G A 280 53.792 125.054 1.761 1.00 74.45 C
ATOM 14 N9 G A 280 55.110 125.397 2.291 1.00 72.62 N
ATOM 15 C8 G A 280 55.815 126.559 2.080 1.00 71.40 C
ATOM 16 N7 G A 280 56.960 126.584 2.705 1.00 71.56 N
ATOM 17 C5 G A 280 57.019 125.363 3.364 1.00 71.57 C
ATOM 18 C6 G A 280 58.029 124.815 4.204 1.00 71.04 C
ATOM 19 O6 G A 280 59.112 125.311 4.532 1.00 71.15 O
ATOM 20 N1 G A 280 57.677 123.553 4.669 1.00 69.90 N
ATOM 21 C2 G A 280 56.510 122.897 4.361 1.00 70.20 C
ATOM 22 N2 G A 280 56.350 121.686 4.904 1.00 70.06 N
ATOM 23 N3 G A 280 55.568 123.391 3.576 1.00 70.65 N
ATOM 24 C4 G A 280 55.885 124.619 3.118 1.00 71.60 C
ATOM 25 P A A 281 51.011 128.294 3.816 1.00 79.04 P
ATOM 26 OP1 A A 281 49.729 129.051 3.771 1.00 78.16 O
ATOM 27 OP2 A A 281 52.284 129.022 4.074 1.00 79.09 O
ATOM 28 O5' A A 281 50.883 127.130 4.895 1.00 77.40 O
TER
ATOM 1 O3' A B 345 56.770 125.039 12.542 1.00 71.26 O
ATOM 2 P G B 346 58.149 125.366 13.300 1.00 72.05 P
ATOM 3 OP1 G B 346 58.479 124.202 14.156 1.00 72.51 O
ATOM 4 OP2 G B 346 58.023 126.714 13.907 1.00 72.10 O
ATOM 5 O5' G B 346 59.237 125.413 12.133 1.00 73.72 O
ATOM 6 C5' G B 346 59.001 126.181 10.937 1.00 75.45 C
ATOM 7 C4' G B 346 58.568 125.272 9.808 1.00 76.42 C
ATOM 8 O4' G B 346 57.817 126.035 8.826 1.00 76.23 O
ATOM 9 C3' G B 346 59.659 124.542 9.028 1.00 76.69 C
ATOM 10 O3' G B 346 59.079 123.301 8.599 1.00 78.22 O
ATOM 11 C2' G B 346 59.872 125.491 7.850 1.00 76.73 C
ATOM 12 O2' G B 346 60.481 124.907 6.718 1.00 77.11 O
ATOM 13 C1' G B 346 58.426 125.898 7.561 1.00 76.39 C
ATOM 14 N9 G B 346 58.212 127.135 6.819 1.00 76.15 N
ATOM 15 C8 G B 346 59.105 128.158 6.602 1.00 77.26 C
ATOM 16 N7 G B 346 58.601 129.136 5.900 1.00 77.80 N
ATOM 17 C5 G B 346 57.299 128.734 5.637 1.00 77.46 C
ATOM 18 C6 G B 346 56.269 129.381 4.913 1.00 78.16 C
ATOM 19 O6 G B 346 56.304 130.477 4.337 1.00 79.80 O
ATOM 20 N1 G B 346 55.101 128.621 4.894 1.00 77.93 N
ATOM 21 C2 G B 346 54.946 127.395 5.496 1.00 76.67 C
ATOM 22 N2 G B 346 53.740 126.820 5.373 1.00 74.90 N
ATOM 23 N3 G B 346 55.903 126.780 6.170 1.00 76.05 N
ATOM 24 C4 G B 346 57.044 127.501 6.199 1.00 76.42 C
ATOM 25 P U B 347 59.982 122.165 7.900 1.00 79.22 P
ATOM 26 OP1 U B 347 61.294 122.036 8.597 1.00 79.47 O
ATOM 27 OP2 U B 347 59.950 122.430 6.436 1.00 80.04 O
ATOM 28 O5' U B 347 59.137 120.831 8.128 1.00 78.36 O
TER
ATOM 2 P G A 280 54.900 129.640 -0.550 1.00 79.44 P
ATOM 3 OP1 G A 280 53.908 130.631 -1.050 1.00 79.34 O
ATOM 4 OP2 G A 280 56.069 130.107 0.239 1.00 80.07 O
ATOM 5 O5' G A 280 54.121 128.532 0.288 1.00 79.25 O
ATOM 6 C5' G A 280 52.942 127.895 -0.244 1.00 77.82 C
ATOM 7 C4' G A 280 52.575 126.689 0.590 1.00 76.80 C
ATOM 8 O4' G A 280 53.639 125.702 0.507 1.00 76.42 O
ATOM 9 C3' G A 280 52.430 126.942 2.080 1.00 75.94 C
ATOM 10 O3' G A 280 51.168 127.498 2.427 1.00 77.31 O
ATOM 11 C2' G A 280 52.663 125.556 2.662 1.00 75.15 C
ATOM 12 O2' G A 280 51.542 124.705 2.536 1.00 73.65 O
ATOM 13 C1' G A 280 53.792 125.054 1.761 1.00 74.45 C
ATOM 14 N9 G A 280 55.110 125.397 2.291 1.00 72.62 N
ATOM 15 C8 G A 280 55.815 126.559 2.080 1.00 71.40 C
ATOM 16 N7 G A 280 56.960 126.584 2.705 1.00 71.56 N
ATOM 17 C5 G A 280 57.019 125.363 3.364 1.00 71.57 C
ATOM 18 C6 G A 280 58.029 124.815 4.204 1.00 71.04 C
ATOM 19 O6 G A 280 59.112 125.311 4.532 1.00 71.15 O
ATOM 20 N1 G A 280 57.677 123.553 4.669 1.00 69.90 N
ATOM 21 C2 G A 280 56.510 122.897 4.361 1.00 70.20 C
ATOM 22 N2 G A 280 56.350 121.686 4.904 1.00 70.06 N
ATOM 23 N3 G A 280 55.568 123.391 3.576 1.00 70.65 N
ATOM 24 C4 G A 280 55.885 124.619 3.118 1.00 71.60 C
ATOM 25 P A A 281 51.011 128.294 3.816 1.00 79.04 P
ATOM 26 OP1 A A 281 49.729 129.051 3.771 1.00 78.16 O
ATOM 27 OP2 A A 281 52.284 129.022 4.074 1.00 79.09 O
ATOM 28 O5' A A 281 50.883 127.130 4.895 1.00 77.40 O
TER
ATOM 1 O3' A B 345 56.770 125.039 12.542 1.00 71.26 O
ATOM 2 P G B 346 58.149 125.366 13.300 1.00 72.05 P
ATOM 3 OP1 G B 346 58.479 124.202 14.156 1.00 72.51 O
ATOM 4 OP2 G B 346 58.023 126.714 13.907 1.00 72.10 O
ATOM 5 O5' G B 346 59.237 125.413 12.133 1.00 73.72 O
ATOM 6 C5' G B 346 59.001 126.181 10.937 1.00 75.45 C
ATOM 7 C4' G B 346 58.568 125.272 9.808 1.00 76.42 C
ATOM 8 O4' G B 346 57.817 126.035 8.826 1.00 76.23 O
ATOM 9 C3' G B 346 59.659 124.542 9.028 1.00 76.69 C
ATOM 10 O3' G B 346 59.079 123.301 8.599 1.00 78.22 O
ATOM 11 C2' G B 346 59.872 125.491 7.850 1.00 76.73 C
ATOM 12 O2' G B 346 60.481 124.907 6.718 1.00 77.11 O
ATOM 13 C1' G B 346 58.426 125.898 7.561 1.00 76.39 C
ATOM 14 N9 G B 346 58.212 127.135 6.819 1.00 76.15 N
ATOM 15 C8 G B 346 59.105 128.158 6.602 1.00 77.26 C
ATOM 16 N7 G B 346 58.601 129.136 5.900 1.00 77.80 N
ATOM 17 C5 G B 346 57.299 128.734 5.637 1.00 77.46 C
ATOM 18 C6 G B 346 56.269 129.381 4.913 1.00 78.16 C
ATOM 19 O6 G B 346 56.304 130.477 4.337 1.00 79.80 O
ATOM 20 N1 G B 346 55.101 128.621 4.894 1.00 77.93 N
ATOM 21 C2 G B 346 54.946 127.395 5.496 1.00 76.67 C
ATOM 22 N2 G B 346 53.740 126.820 5.373 1.00 74.90 N
ATOM 23 N3 G B 346 55.903 126.780 6.170 1.00 76.05 N
ATOM 24 C4 G B 346 57.044 127.501 6.199 1.00 76.42 C
ATOM 25 P U B 347 59.982 122.165 7.900 1.00 79.22 P
ATOM 26 OP1 U B 347 61.294 122.036 8.597 1.00 79.47 O
ATOM 27 OP2 U B 347 59.950 122.430 6.436 1.00 80.04 O
ATOM 28 O5' U B 347 59.137 120.831 8.128 1.00 78.36 O
TER
Atoms:
OP1: (53.908,130.631,-1.050)
OP2: (56.069,130.107,0.239)
C3': (52.430,126.942,2.080)
C1': (53.792,125.054,1.761)
C5': (52.942,127.895,-0.244)
O6: (59.112,125.311,4.532)
O4': (53.639,125.702,0.507)
C8: (55.815,126.559,2.080)
C2: (56.510,122.897,4.361)
C6: (58.029,124.815,4.204)
C5: (57.019,125.363,3.364)
C4: (55.885,124.619,3.118)
P: (54.900,129.640,-0.550)
C4': (52.575,126.689,0.590)
C2': (52.663,125.556,2.662)
O2': (51.542,124.705,2.536)
N1: (57.677,123.553,4.669)
N2: (56.350,121.686,4.904)
N3: (55.568,123.391,3.576)
N7: (56.960,126.584,2.705)
N9: (55.110,125.397,2.291)
O5': (54.121,128.532,0.288)
O3': (51.168,127.498,2.427)
OP2: (56.069,130.107,0.239)
C3': (52.430,126.942,2.080)
C1': (53.792,125.054,1.761)
C5': (52.942,127.895,-0.244)
O6: (59.112,125.311,4.532)
O4': (53.639,125.702,0.507)
C8: (55.815,126.559,2.080)
C2: (56.510,122.897,4.361)
C6: (58.029,124.815,4.204)
C5: (57.019,125.363,3.364)
C4: (55.885,124.619,3.118)
P: (54.900,129.640,-0.550)
C4': (52.575,126.689,0.590)
C2': (52.663,125.556,2.662)
O2': (51.542,124.705,2.536)
N1: (57.677,123.553,4.669)
N2: (56.350,121.686,4.904)
N3: (55.568,123.391,3.576)
N7: (56.960,126.584,2.705)
N9: (55.110,125.397,2.291)
O5': (54.121,128.532,0.288)
O3': (51.168,127.498,2.427)
OP1: (58.479,124.202,14.156)
OP2: (58.023,126.714,13.907)
C3': (59.659,124.542,9.028)
C1': (58.426,125.898,7.561)
C5': (59.001,126.181,10.937)
O6: (56.304,130.477,4.337)
O4': (57.817,126.035,8.826)
C8: (59.105,128.158,6.602)
C2: (54.946,127.395,5.496)
C6: (56.269,129.381,4.913)
C5: (57.299,128.734,5.637)
C4: (57.044,127.501,6.199)
P: (58.149,125.366,13.300)
C4': (58.568,125.272,9.808)
C2': (59.872,125.491,7.850)
O2': (60.481,124.907,6.718)
N1: (55.101,128.621,4.894)
N2: (53.740,126.820,5.373)
N3: (55.903,126.780,6.170)
N7: (58.601,129.136,5.900)
N9: (58.212,127.135,6.819)
O5': (59.237,125.413,12.133)
O3': (59.079,123.301,8.599)
OP2: (58.023,126.714,13.907)
C3': (59.659,124.542,9.028)
C1': (58.426,125.898,7.561)
C5': (59.001,126.181,10.937)
O6: (56.304,130.477,4.337)
O4': (57.817,126.035,8.826)
C8: (59.105,128.158,6.602)
C2: (54.946,127.395,5.496)
C6: (56.269,129.381,4.913)
C5: (57.299,128.734,5.637)
C4: (57.044,127.501,6.199)
P: (58.149,125.366,13.300)
C4': (58.568,125.272,9.808)
C2': (59.872,125.491,7.850)
O2': (60.481,124.907,6.718)
N1: (55.101,128.621,4.894)
N2: (53.740,126.820,5.373)
N3: (55.903,126.780,6.170)
N7: (58.601,129.136,5.900)
N9: (58.212,127.135,6.819)
O5': (59.237,125.413,12.133)
O3': (59.079,123.301,8.599)
Image (generated by PyMOL):