Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.710 129.118 -1.688 1.00 95.22 O
ATOM 2 P G A 280 55.191 129.934 -0.410 1.00 96.18 P
ATOM 3 OP1 G A 280 54.216 130.965 -0.873 1.00 95.87 O
ATOM 4 OP2 G A 280 56.398 130.353 0.354 1.00 95.75 O
ATOM 5 O5' G A 280 54.386 128.840 0.425 1.00 95.40 O
ATOM 6 C5' G A 280 53.202 128.220 -0.122 1.00 94.06 C
ATOM 7 C4' G A 280 52.832 126.996 0.681 1.00 93.37 C
ATOM 8 O4' G A 280 53.894 126.006 0.579 1.00 92.77 O
ATOM 9 C3' G A 280 52.683 127.222 2.175 1.00 92.87 C
ATOM 10 O3' G A 280 51.413 127.768 2.514 1.00 94.05 O
ATOM 11 C2' G A 280 52.915 125.825 2.732 1.00 91.74 C
ATOM 12 O2' G A 280 51.785 124.983 2.594 1.00 91.70 O
ATOM 13 C1' G A 280 54.044 125.333 1.821 1.00 90.37 C
ATOM 14 N9 G A 280 55.368 125.652 2.349 1.00 88.13 N
ATOM 15 C8 G A 280 56.115 126.778 2.087 1.00 87.25 C
ATOM 16 N7 G A 280 57.259 126.793 2.716 1.00 86.68 N
ATOM 17 C5 G A 280 57.273 125.604 3.435 1.00 85.90 C
ATOM 18 C6 G A 280 58.259 125.066 4.302 1.00 84.83 C
ATOM 19 O6 G A 280 59.355 125.545 4.610 1.00 83.39 O
ATOM 20 N1 G A 280 57.865 123.838 4.826 1.00 84.27 N
ATOM 21 C2 G A 280 56.678 123.204 4.545 1.00 84.22 C
ATOM 22 N2 G A 280 56.476 122.023 5.145 1.00 83.30 N
ATOM 23 N3 G A 280 55.754 123.693 3.735 1.00 85.22 N
ATOM 24 C4 G A 280 56.114 124.887 3.219 1.00 86.53 C
ATOM 25 P A A 281 51.236 128.566 3.902 1.00 95.17 P
ATOM 26 OP1 A A 281 49.933 129.288 3.833 1.00 93.82 O
ATOM 27 OP2 A A 281 52.493 129.333 4.165 1.00 93.83 O
ATOM 28 O5' A A 281 51.120 127.400 4.984 1.00 93.21 O
TER
ATOM 1 O3' A B 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 2 P G B 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G B 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G B 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G B 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G B 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G B 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G B 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G B 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G B 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G B 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G B 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G B 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G B 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G B 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G B 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G B 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G B 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G B 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G B 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G B 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G B 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G B 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
TER
ATOM 2 P G A 280 55.191 129.934 -0.410 1.00 96.18 P
ATOM 3 OP1 G A 280 54.216 130.965 -0.873 1.00 95.87 O
ATOM 4 OP2 G A 280 56.398 130.353 0.354 1.00 95.75 O
ATOM 5 O5' G A 280 54.386 128.840 0.425 1.00 95.40 O
ATOM 6 C5' G A 280 53.202 128.220 -0.122 1.00 94.06 C
ATOM 7 C4' G A 280 52.832 126.996 0.681 1.00 93.37 C
ATOM 8 O4' G A 280 53.894 126.006 0.579 1.00 92.77 O
ATOM 9 C3' G A 280 52.683 127.222 2.175 1.00 92.87 C
ATOM 10 O3' G A 280 51.413 127.768 2.514 1.00 94.05 O
ATOM 11 C2' G A 280 52.915 125.825 2.732 1.00 91.74 C
ATOM 12 O2' G A 280 51.785 124.983 2.594 1.00 91.70 O
ATOM 13 C1' G A 280 54.044 125.333 1.821 1.00 90.37 C
ATOM 14 N9 G A 280 55.368 125.652 2.349 1.00 88.13 N
ATOM 15 C8 G A 280 56.115 126.778 2.087 1.00 87.25 C
ATOM 16 N7 G A 280 57.259 126.793 2.716 1.00 86.68 N
ATOM 17 C5 G A 280 57.273 125.604 3.435 1.00 85.90 C
ATOM 18 C6 G A 280 58.259 125.066 4.302 1.00 84.83 C
ATOM 19 O6 G A 280 59.355 125.545 4.610 1.00 83.39 O
ATOM 20 N1 G A 280 57.865 123.838 4.826 1.00 84.27 N
ATOM 21 C2 G A 280 56.678 123.204 4.545 1.00 84.22 C
ATOM 22 N2 G A 280 56.476 122.023 5.145 1.00 83.30 N
ATOM 23 N3 G A 280 55.754 123.693 3.735 1.00 85.22 N
ATOM 24 C4 G A 280 56.114 124.887 3.219 1.00 86.53 C
ATOM 25 P A A 281 51.236 128.566 3.902 1.00 95.17 P
ATOM 26 OP1 A A 281 49.933 129.288 3.833 1.00 93.82 O
ATOM 27 OP2 A A 281 52.493 129.333 4.165 1.00 93.83 O
ATOM 28 O5' A A 281 51.120 127.400 4.984 1.00 93.21 O
TER
ATOM 1 O3' A B 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 2 P G B 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 3 OP1 G B 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 4 OP2 G B 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 5 O5' G B 346 59.488 125.693 12.155 1.00 92.04 O
ATOM 6 C5' G B 346 59.203 126.435 10.954 1.00 93.42 C
ATOM 7 C4' G B 346 58.798 125.496 9.836 1.00 94.14 C
ATOM 8 O4' G B 346 58.008 126.231 8.859 1.00 93.46 O
ATOM 9 C3' G B 346 59.924 124.828 9.049 1.00 94.24 C
ATOM 10 O3' G B 346 59.426 123.559 8.583 1.00 96.32 O
ATOM 11 C2' G B 346 60.107 125.813 7.895 1.00 93.52 C
ATOM 12 O2' G B 346 60.746 125.276 6.756 1.00 93.78 O
ATOM 13 C1' G B 346 58.649 126.178 7.601 1.00 92.70 C
ATOM 14 N9 G B 346 58.409 127.446 6.919 1.00 90.84 N
ATOM 15 C8 G B 346 59.278 128.503 6.770 1.00 90.43 C
ATOM 16 N7 G B 346 58.759 129.504 6.111 1.00 90.18 N
ATOM 17 C5 G B 346 57.470 129.083 5.806 1.00 90.10 C
ATOM 18 C6 G B 346 56.431 129.746 5.102 1.00 90.31 C
ATOM 19 O6 G B 346 56.445 130.873 4.592 1.00 91.59 O
ATOM 20 N1 G B 346 55.283 128.959 5.022 1.00 89.88 N
ATOM 21 C2 G B 346 55.150 127.700 5.554 1.00 89.28 C
ATOM 22 N2 G B 346 53.957 127.110 5.381 1.00 87.93 N
ATOM 23 N3 G B 346 56.113 127.069 6.209 1.00 89.50 N
ATOM 24 C4 G B 346 57.239 127.816 6.296 1.00 90.19 C
ATOM 25 P U B 347 60.440 122.410 8.066 1.00 97.26 P
ATOM 26 OP1 U B 347 61.624 122.323 8.970 1.00 97.54 O
ATOM 27 OP2 U B 347 60.646 122.626 6.607 1.00 97.15 O
ATOM 28 O5' U B 347 59.586 121.068 8.210 1.00 96.15 O
TER
Atoms:
OP1: (54.216,130.965,-0.873)
OP2: (56.398,130.353,0.354)
C3': (52.683,127.222,2.175)
C1': (54.044,125.333,1.821)
C5': (53.202,128.220,-0.122)
O6: (59.355,125.545,4.610)
O4': (53.894,126.006,0.579)
C8: (56.115,126.778,2.087)
C2: (56.678,123.204,4.545)
C6: (58.259,125.066,4.302)
C5: (57.273,125.604,3.435)
C4: (56.114,124.887,3.219)
P: (55.191,129.934,-0.410)
C4': (52.832,126.996,0.681)
C2': (52.915,125.825,2.732)
O2': (51.785,124.983,2.594)
N1: (57.865,123.838,4.826)
N2: (56.476,122.023,5.145)
N3: (55.754,123.693,3.735)
N7: (57.259,126.793,2.716)
N9: (55.368,125.652,2.349)
O5': (54.386,128.840,0.425)
O3': (51.413,127.768,2.514)
OP2: (56.398,130.353,0.354)
C3': (52.683,127.222,2.175)
C1': (54.044,125.333,1.821)
C5': (53.202,128.220,-0.122)
O6: (59.355,125.545,4.610)
O4': (53.894,126.006,0.579)
C8: (56.115,126.778,2.087)
C2: (56.678,123.204,4.545)
C6: (58.259,125.066,4.302)
C5: (57.273,125.604,3.435)
C4: (56.114,124.887,3.219)
P: (55.191,129.934,-0.410)
C4': (52.832,126.996,0.681)
C2': (52.915,125.825,2.732)
O2': (51.785,124.983,2.594)
N1: (57.865,123.838,4.826)
N2: (56.476,122.023,5.145)
N3: (55.754,123.693,3.735)
N7: (57.259,126.793,2.716)
N9: (55.368,125.652,2.349)
O5': (54.386,128.840,0.425)
O3': (51.413,127.768,2.514)
OP1: (58.807,124.564,14.264)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
OP2: (58.342,127.063,13.913)
C3': (59.924,124.828,9.049)
C1': (58.649,126.178,7.601)
C5': (59.203,126.435,10.954)
O6: (56.445,130.873,4.592)
O4': (58.008,126.231,8.859)
C8: (59.278,128.503,6.770)
C2: (55.150,127.700,5.554)
C6: (56.431,129.746,5.102)
C5: (57.470,129.083,5.806)
C4: (57.239,127.816,6.296)
P: (58.449,125.686,13.365)
C4': (58.798,125.496,9.836)
C2': (60.107,125.813,7.895)
O2': (60.746,125.276,6.756)
N1: (55.283,128.959,5.022)
N2: (53.957,127.110,5.381)
N3: (56.113,127.069,6.209)
N7: (58.759,129.504,6.111)
N9: (58.409,127.446,6.919)
O5': (59.488,125.693,12.155)
O3': (59.426,123.559,8.583)
Image (generated by PyMOL):