Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0280:0346
Extra
PDB:
ATOM 1 O3' C A 279 55.395 128.816 -1.847 1.00 67.06 O
ATOM 2 P G A 280 54.721 129.578 -0.609 1.00 68.01 P
ATOM 3 OP1 G A 280 53.687 130.504 -1.148 1.00 67.86 O
ATOM 4 OP2 G A 280 55.811 130.116 0.247 1.00 67.82 O
ATOM 5 O5' G A 280 53.972 128.411 0.174 1.00 67.63 O
ATOM 6 C5' G A 280 52.827 127.746 -0.403 1.00 66.94 C
ATOM 7 C4' G A 280 52.418 126.575 0.457 1.00 66.34 C
ATOM 8 O4' G A 280 53.471 125.572 0.438 1.00 66.26 O
ATOM 9 C3' G A 280 52.241 126.900 1.930 1.00 65.55 C
ATOM 10 O3' G A 280 50.968 127.460 2.218 1.00 65.80 O
ATOM 11 C2' G A 280 52.483 125.554 2.593 1.00 64.97 C
ATOM 12 O2' G A 280 51.369 124.688 2.503 1.00 64.51 O
ATOM 13 C1' G A 280 53.627 125.014 1.733 1.00 64.25 C
ATOM 14 N9 G A 280 54.944 125.405 2.228 1.00 63.17 N
ATOM 15 C8 G A 280 55.631 126.560 1.930 1.00 62.25 C
ATOM 16 N7 G A 280 56.797 126.628 2.512 1.00 62.50 N
ATOM 17 C5 G A 280 56.888 125.450 3.241 1.00 63.09 C
ATOM 18 C6 G A 280 57.932 124.959 4.071 1.00 63.03 C
ATOM 19 O6 G A 280 59.026 125.479 4.323 1.00 63.10 O
ATOM 20 N1 G A 280 57.604 123.726 4.630 1.00 62.54 N
ATOM 21 C2 G A 280 56.429 123.046 4.411 1.00 62.17 C
ATOM 22 N2 G A 280 56.297 121.872 5.043 1.00 61.49 N
ATOM 23 N3 G A 280 55.455 123.485 3.630 1.00 62.71 N
ATOM 24 C4 G A 280 55.749 124.686 3.082 1.00 63.32 C
ATOM 25 P A A 281 50.757 128.280 3.583 1.00 66.83 P
ATOM 26 OP1 A A 281 49.459 128.992 3.481 1.00 67.30 O
ATOM 27 OP2 A A 281 51.995 129.055 3.863 1.00 66.25 O
ATOM 28 O5' A A 281 50.633 127.129 4.680 1.00 66.86 O
TER
ATOM 1 O3' A B 345 56.497 125.069 12.501 1.00 59.27 O
ATOM 2 P G B 346 57.909 125.384 13.198 1.00 58.76 P
ATOM 3 OP1 G B 346 58.315 124.213 14.014 1.00 59.07 O
ATOM 4 OP2 G B 346 57.802 126.717 13.830 1.00 58.89 O
ATOM 5 O5' G B 346 58.919 125.474 11.971 1.00 60.24 O
ATOM 6 C5' G B 346 58.580 126.235 10.800 1.00 61.20 C
ATOM 7 C4' G B 346 58.172 125.310 9.677 1.00 62.21 C
ATOM 8 O4' G B 346 57.431 126.062 8.683 1.00 61.98 O
ATOM 9 C3' G B 346 59.287 124.599 8.915 1.00 62.33 C
ATOM 10 O3' G B 346 58.735 123.353 8.466 1.00 64.25 O
ATOM 11 C2' G B 346 59.516 125.559 7.751 1.00 61.72 C
ATOM 12 O2' G B 346 60.158 124.989 6.630 1.00 62.29 O
ATOM 13 C1' G B 346 58.074 125.946 7.434 1.00 61.21 C
ATOM 14 N9 G B 346 57.842 127.183 6.702 1.00 59.96 N
ATOM 15 C8 G B 346 58.709 128.229 6.491 1.00 60.54 C
ATOM 16 N7 G B 346 58.176 129.202 5.805 1.00 60.71 N
ATOM 17 C5 G B 346 56.883 128.769 5.545 1.00 60.46 C
ATOM 18 C6 G B 346 55.829 129.396 4.840 1.00 61.12 C
ATOM 19 O6 G B 346 55.827 130.501 4.281 1.00 63.22 O
ATOM 20 N1 G B 346 54.684 128.602 4.819 1.00 60.29 N
ATOM 21 C2 G B 346 54.568 127.366 5.405 1.00 58.87 C
ATOM 22 N2 G B 346 53.382 126.761 5.286 1.00 57.49 N
ATOM 23 N3 G B 346 55.544 126.771 6.061 1.00 58.37 N
ATOM 24 C4 G B 346 56.665 127.525 6.091 1.00 59.77 C
ATOM 25 P U B 347 59.658 122.268 7.716 1.00 65.98 P
ATOM 26 OP1 U B 347 60.974 122.176 8.403 1.00 66.08 O
ATOM 27 OP2 U B 347 59.609 122.576 6.262 1.00 66.29 O
ATOM 28 O5' U B 347 58.868 120.899 7.920 1.00 64.70 O
TER
ATOM 2 P G A 280 54.721 129.578 -0.609 1.00 68.01 P
ATOM 3 OP1 G A 280 53.687 130.504 -1.148 1.00 67.86 O
ATOM 4 OP2 G A 280 55.811 130.116 0.247 1.00 67.82 O
ATOM 5 O5' G A 280 53.972 128.411 0.174 1.00 67.63 O
ATOM 6 C5' G A 280 52.827 127.746 -0.403 1.00 66.94 C
ATOM 7 C4' G A 280 52.418 126.575 0.457 1.00 66.34 C
ATOM 8 O4' G A 280 53.471 125.572 0.438 1.00 66.26 O
ATOM 9 C3' G A 280 52.241 126.900 1.930 1.00 65.55 C
ATOM 10 O3' G A 280 50.968 127.460 2.218 1.00 65.80 O
ATOM 11 C2' G A 280 52.483 125.554 2.593 1.00 64.97 C
ATOM 12 O2' G A 280 51.369 124.688 2.503 1.00 64.51 O
ATOM 13 C1' G A 280 53.627 125.014 1.733 1.00 64.25 C
ATOM 14 N9 G A 280 54.944 125.405 2.228 1.00 63.17 N
ATOM 15 C8 G A 280 55.631 126.560 1.930 1.00 62.25 C
ATOM 16 N7 G A 280 56.797 126.628 2.512 1.00 62.50 N
ATOM 17 C5 G A 280 56.888 125.450 3.241 1.00 63.09 C
ATOM 18 C6 G A 280 57.932 124.959 4.071 1.00 63.03 C
ATOM 19 O6 G A 280 59.026 125.479 4.323 1.00 63.10 O
ATOM 20 N1 G A 280 57.604 123.726 4.630 1.00 62.54 N
ATOM 21 C2 G A 280 56.429 123.046 4.411 1.00 62.17 C
ATOM 22 N2 G A 280 56.297 121.872 5.043 1.00 61.49 N
ATOM 23 N3 G A 280 55.455 123.485 3.630 1.00 62.71 N
ATOM 24 C4 G A 280 55.749 124.686 3.082 1.00 63.32 C
ATOM 25 P A A 281 50.757 128.280 3.583 1.00 66.83 P
ATOM 26 OP1 A A 281 49.459 128.992 3.481 1.00 67.30 O
ATOM 27 OP2 A A 281 51.995 129.055 3.863 1.00 66.25 O
ATOM 28 O5' A A 281 50.633 127.129 4.680 1.00 66.86 O
TER
ATOM 1 O3' A B 345 56.497 125.069 12.501 1.00 59.27 O
ATOM 2 P G B 346 57.909 125.384 13.198 1.00 58.76 P
ATOM 3 OP1 G B 346 58.315 124.213 14.014 1.00 59.07 O
ATOM 4 OP2 G B 346 57.802 126.717 13.830 1.00 58.89 O
ATOM 5 O5' G B 346 58.919 125.474 11.971 1.00 60.24 O
ATOM 6 C5' G B 346 58.580 126.235 10.800 1.00 61.20 C
ATOM 7 C4' G B 346 58.172 125.310 9.677 1.00 62.21 C
ATOM 8 O4' G B 346 57.431 126.062 8.683 1.00 61.98 O
ATOM 9 C3' G B 346 59.287 124.599 8.915 1.00 62.33 C
ATOM 10 O3' G B 346 58.735 123.353 8.466 1.00 64.25 O
ATOM 11 C2' G B 346 59.516 125.559 7.751 1.00 61.72 C
ATOM 12 O2' G B 346 60.158 124.989 6.630 1.00 62.29 O
ATOM 13 C1' G B 346 58.074 125.946 7.434 1.00 61.21 C
ATOM 14 N9 G B 346 57.842 127.183 6.702 1.00 59.96 N
ATOM 15 C8 G B 346 58.709 128.229 6.491 1.00 60.54 C
ATOM 16 N7 G B 346 58.176 129.202 5.805 1.00 60.71 N
ATOM 17 C5 G B 346 56.883 128.769 5.545 1.00 60.46 C
ATOM 18 C6 G B 346 55.829 129.396 4.840 1.00 61.12 C
ATOM 19 O6 G B 346 55.827 130.501 4.281 1.00 63.22 O
ATOM 20 N1 G B 346 54.684 128.602 4.819 1.00 60.29 N
ATOM 21 C2 G B 346 54.568 127.366 5.405 1.00 58.87 C
ATOM 22 N2 G B 346 53.382 126.761 5.286 1.00 57.49 N
ATOM 23 N3 G B 346 55.544 126.771 6.061 1.00 58.37 N
ATOM 24 C4 G B 346 56.665 127.525 6.091 1.00 59.77 C
ATOM 25 P U B 347 59.658 122.268 7.716 1.00 65.98 P
ATOM 26 OP1 U B 347 60.974 122.176 8.403 1.00 66.08 O
ATOM 27 OP2 U B 347 59.609 122.576 6.262 1.00 66.29 O
ATOM 28 O5' U B 347 58.868 120.899 7.920 1.00 64.70 O
TER
Atoms:
OP1: (53.687,130.504,-1.148)
OP2: (55.811,130.116,0.247)
C3': (52.241,126.900,1.930)
C1': (53.627,125.014,1.733)
C5': (52.827,127.746,-0.403)
O6: (59.026,125.479,4.323)
O4': (53.471,125.572,0.438)
C8: (55.631,126.560,1.930)
C2: (56.429,123.046,4.411)
C6: (57.932,124.959,4.071)
C5: (56.888,125.450,3.241)
C4: (55.749,124.686,3.082)
P: (54.721,129.578,-0.609)
C4': (52.418,126.575,0.457)
C2': (52.483,125.554,2.593)
O2': (51.369,124.688,2.503)
N1: (57.604,123.726,4.630)
N2: (56.297,121.872,5.043)
N3: (55.455,123.485,3.630)
N7: (56.797,126.628,2.512)
N9: (54.944,125.405,2.228)
O5': (53.972,128.411,0.174)
O3': (50.968,127.460,2.218)
OP2: (55.811,130.116,0.247)
C3': (52.241,126.900,1.930)
C1': (53.627,125.014,1.733)
C5': (52.827,127.746,-0.403)
O6: (59.026,125.479,4.323)
O4': (53.471,125.572,0.438)
C8: (55.631,126.560,1.930)
C2: (56.429,123.046,4.411)
C6: (57.932,124.959,4.071)
C5: (56.888,125.450,3.241)
C4: (55.749,124.686,3.082)
P: (54.721,129.578,-0.609)
C4': (52.418,126.575,0.457)
C2': (52.483,125.554,2.593)
O2': (51.369,124.688,2.503)
N1: (57.604,123.726,4.630)
N2: (56.297,121.872,5.043)
N3: (55.455,123.485,3.630)
N7: (56.797,126.628,2.512)
N9: (54.944,125.405,2.228)
O5': (53.972,128.411,0.174)
O3': (50.968,127.460,2.218)
OP1: (58.315,124.213,14.014)
OP2: (57.802,126.717,13.830)
C3': (59.287,124.599,8.915)
C1': (58.074,125.946,7.434)
C5': (58.580,126.235,10.800)
O6: (55.827,130.501,4.281)
O4': (57.431,126.062,8.683)
C8: (58.709,128.229,6.491)
C2: (54.568,127.366,5.405)
C6: (55.829,129.396,4.840)
C5: (56.883,128.769,5.545)
C4: (56.665,127.525,6.091)
P: (57.909,125.384,13.198)
C4': (58.172,125.310,9.677)
C2': (59.516,125.559,7.751)
O2': (60.158,124.989,6.630)
N1: (54.684,128.602,4.819)
N2: (53.382,126.761,5.286)
N3: (55.544,126.771,6.061)
N7: (58.176,129.202,5.805)
N9: (57.842,127.183,6.702)
O5': (58.919,125.474,11.971)
O3': (58.735,123.353,8.466)
OP2: (57.802,126.717,13.830)
C3': (59.287,124.599,8.915)
C1': (58.074,125.946,7.434)
C5': (58.580,126.235,10.800)
O6: (55.827,130.501,4.281)
O4': (57.431,126.062,8.683)
C8: (58.709,128.229,6.491)
C2: (54.568,127.366,5.405)
C6: (55.829,129.396,4.840)
C5: (56.883,128.769,5.545)
C4: (56.665,127.525,6.091)
P: (57.909,125.384,13.198)
C4': (58.172,125.310,9.677)
C2': (59.516,125.559,7.751)
O2': (60.158,124.989,6.630)
N1: (54.684,128.602,4.819)
N2: (53.382,126.761,5.286)
N3: (55.544,126.771,6.061)
N7: (58.176,129.202,5.805)
N9: (57.842,127.183,6.702)
O5': (58.919,125.474,11.971)
O3': (58.735,123.353,8.466)
Image (generated by PyMOL):