Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0552:0580
Extra
PDB:
ATOM 1 O3' C A 551 -10.941 96.190 93.967 1.00 55.59 O
ATOM 2 P G A 552 -10.887 95.025 95.068 1.00 56.80 P
ATOM 3 OP1 G A 552 -10.894 93.730 94.332 1.00 55.78 O
ATOM 4 OP2 G A 552 -11.933 95.303 96.095 1.00 55.27 O
ATOM 5 O5' G A 552 -9.455 95.208 95.739 1.00 56.64 O
ATOM 6 C5' G A 552 -8.284 95.362 94.927 1.00 55.48 C
ATOM 7 C4' G A 552 -7.248 96.169 95.661 1.00 54.33 C
ATOM 8 O4' G A 552 -7.807 97.453 96.030 1.00 55.65 O
ATOM 9 C3' G A 552 -6.785 95.590 96.980 1.00 53.36 C
ATOM 10 O3' G A 552 -5.796 94.599 96.720 1.00 50.62 O
ATOM 11 C2' G A 552 -6.217 96.820 97.686 1.00 55.86 C
ATOM 12 O2' G A 552 -4.898 97.124 97.276 1.00 57.66 O
ATOM 13 C1' G A 552 -7.158 97.930 97.195 1.00 57.74 C
ATOM 14 N9 G A 552 -8.174 98.360 98.153 1.00 61.08 N
ATOM 15 C8 G A 552 -9.388 97.759 98.393 1.00 63.16 C
ATOM 16 N7 G A 552 -10.076 98.347 99.333 1.00 64.13 N
ATOM 17 C5 G A 552 -9.274 99.406 99.737 1.00 64.28 C
ATOM 18 C6 G A 552 -9.487 100.387 100.743 1.00 65.61 C
ATOM 19 O6 G A 552 -10.455 100.517 101.506 1.00 67.68 O
ATOM 20 N1 G A 552 -8.424 101.274 100.823 1.00 66.11 N
ATOM 21 C2 G A 552 -7.295 101.225 100.046 1.00 65.61 C
ATOM 22 N2 G A 552 -6.385 102.177 100.291 1.00 66.36 N
ATOM 23 N3 G A 552 -7.078 100.313 99.107 1.00 63.99 N
ATOM 24 C4 G A 552 -8.101 99.439 99.010 1.00 62.62 C
ATOM 25 P A A 553 -5.260 93.655 97.906 1.00 49.79 P
ATOM 26 OP1 A A 553 -5.848 92.315 97.698 1.00 48.94 O
ATOM 27 OP2 A A 553 -5.426 94.333 99.217 1.00 49.01 O
ATOM 28 O5' A A 553 -3.706 93.526 97.595 1.00 48.49 O
TER
ATOM 1 O3' A B 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G B 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G B 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G B 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G B 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G B 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G B 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G B 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G B 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G B 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G B 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G B 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G B 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G B 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G B 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G B 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G B 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G B 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G B 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G B 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G B 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G B 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G B 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G B 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A B 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A B 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A B 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A B 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 2 P G A 552 -10.887 95.025 95.068 1.00 56.80 P
ATOM 3 OP1 G A 552 -10.894 93.730 94.332 1.00 55.78 O
ATOM 4 OP2 G A 552 -11.933 95.303 96.095 1.00 55.27 O
ATOM 5 O5' G A 552 -9.455 95.208 95.739 1.00 56.64 O
ATOM 6 C5' G A 552 -8.284 95.362 94.927 1.00 55.48 C
ATOM 7 C4' G A 552 -7.248 96.169 95.661 1.00 54.33 C
ATOM 8 O4' G A 552 -7.807 97.453 96.030 1.00 55.65 O
ATOM 9 C3' G A 552 -6.785 95.590 96.980 1.00 53.36 C
ATOM 10 O3' G A 552 -5.796 94.599 96.720 1.00 50.62 O
ATOM 11 C2' G A 552 -6.217 96.820 97.686 1.00 55.86 C
ATOM 12 O2' G A 552 -4.898 97.124 97.276 1.00 57.66 O
ATOM 13 C1' G A 552 -7.158 97.930 97.195 1.00 57.74 C
ATOM 14 N9 G A 552 -8.174 98.360 98.153 1.00 61.08 N
ATOM 15 C8 G A 552 -9.388 97.759 98.393 1.00 63.16 C
ATOM 16 N7 G A 552 -10.076 98.347 99.333 1.00 64.13 N
ATOM 17 C5 G A 552 -9.274 99.406 99.737 1.00 64.28 C
ATOM 18 C6 G A 552 -9.487 100.387 100.743 1.00 65.61 C
ATOM 19 O6 G A 552 -10.455 100.517 101.506 1.00 67.68 O
ATOM 20 N1 G A 552 -8.424 101.274 100.823 1.00 66.11 N
ATOM 21 C2 G A 552 -7.295 101.225 100.046 1.00 65.61 C
ATOM 22 N2 G A 552 -6.385 102.177 100.291 1.00 66.36 N
ATOM 23 N3 G A 552 -7.078 100.313 99.107 1.00 63.99 N
ATOM 24 C4 G A 552 -8.101 99.439 99.010 1.00 62.62 C
ATOM 25 P A A 553 -5.260 93.655 97.906 1.00 49.79 P
ATOM 26 OP1 A A 553 -5.848 92.315 97.698 1.00 48.94 O
ATOM 27 OP2 A A 553 -5.426 94.333 99.217 1.00 49.01 O
ATOM 28 O5' A A 553 -3.706 93.526 97.595 1.00 48.49 O
TER
ATOM 1 O3' A B 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G B 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G B 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G B 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G B 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G B 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G B 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G B 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G B 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G B 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G B 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G B 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G B 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G B 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G B 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G B 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G B 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G B 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G B 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G B 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G B 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G B 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G B 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G B 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A B 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A B 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A B 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A B 581 -1.858 105.115 99.798 1.00 58.76 O
TER
Atoms:
OP1: (-10.894,93.730,94.332)
OP2: (-11.933,95.303,96.095)
C3': (-6.785,95.590,96.980)
C1': (-7.158,97.930,97.195)
C5': (-8.284,95.362,94.927)
O6: (-10.455,100.517,101.506)
O4': (-7.807,97.453,96.030)
C8: (-9.388,97.759,98.393)
C2: (-7.295,101.225,100.046)
C6: (-9.487,100.387,100.743)
C5: (-9.274,99.406,99.737)
C4: (-8.101,99.439,99.010)
P: (-10.887,95.025,95.068)
C4': (-7.248,96.169,95.661)
C2': (-6.217,96.820,97.686)
O2': (-4.898,97.124,97.276)
N1: (-8.424,101.274,100.823)
N2: (-6.385,102.177,100.291)
N3: (-7.078,100.313,99.107)
N7: (-10.076,98.347,99.333)
N9: (-8.174,98.360,98.153)
O5': (-9.455,95.208,95.739)
O3': (-5.796,94.599,96.720)
OP2: (-11.933,95.303,96.095)
C3': (-6.785,95.590,96.980)
C1': (-7.158,97.930,97.195)
C5': (-8.284,95.362,94.927)
O6: (-10.455,100.517,101.506)
O4': (-7.807,97.453,96.030)
C8: (-9.388,97.759,98.393)
C2: (-7.295,101.225,100.046)
C6: (-9.487,100.387,100.743)
C5: (-9.274,99.406,99.737)
C4: (-8.101,99.439,99.010)
P: (-10.887,95.025,95.068)
C4': (-7.248,96.169,95.661)
C2': (-6.217,96.820,97.686)
O2': (-4.898,97.124,97.276)
N1: (-8.424,101.274,100.823)
N2: (-6.385,102.177,100.291)
N3: (-7.078,100.313,99.107)
N7: (-10.076,98.347,99.333)
N9: (-8.174,98.360,98.153)
O5': (-9.455,95.208,95.739)
O3': (-5.796,94.599,96.720)
OP1: (-6.009,105.285,104.510)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
Image (generated by PyMOL):