Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DH3:H8:H10
Extra
PDB:
ATOM 1 O3' C A 7 3.331 -6.406 6.265 1.00 47.14 O
ATOM 2 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G A 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G A 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G A 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G A 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G A 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G A 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G A 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G A 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G A 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G A 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G A 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G A 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G A 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G A 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G A 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G A 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G A 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G A 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G A 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U A 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U A 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U A 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U A 9 4.242 -11.488 12.965 1.00 58.13 O
TER
ATOM 1 O3' U B 9 4.514 -15.695 13.635 1.00 68.73 O
ATOM 2 P G B 10 5.416 -17.003 13.361 1.00 70.71 P
ATOM 3 OP1 G B 10 5.073 -17.613 12.041 1.00 69.93 O
ATOM 4 OP2 G B 10 5.390 -17.772 14.623 1.00 69.78 O
ATOM 5 O5' G B 10 6.906 -16.430 13.211 1.00 70.96 O
ATOM 6 C5' G B 10 8.025 -17.306 13.066 1.00 69.55 C
ATOM 7 C4' G B 10 8.134 -17.721 11.626 1.00 67.93 C
ATOM 8 O4' G B 10 8.582 -16.632 10.784 1.00 68.04 O
ATOM 9 C3' G B 10 9.135 -18.817 11.426 1.00 66.63 C
ATOM 10 O3' G B 10 8.452 -19.977 11.918 1.00 64.63 O
ATOM 11 C2' G B 10 9.307 -18.693 9.910 1.00 68.24 C
ATOM 12 O2' G B 10 8.288 -19.377 9.186 1.00 69.36 O
ATOM 13 C1' G B 10 9.089 -17.206 9.576 1.00 68.45 C
ATOM 14 N9 G B 10 10.199 -16.357 9.063 1.00 68.46 N
ATOM 15 C8 G B 10 11.392 -16.513 8.354 1.00 67.27 C
ATOM 16 N7 G B 10 12.031 -15.371 8.150 1.00 65.48 N
ATOM 17 C5 G B 10 11.199 -14.423 8.745 1.00 66.52 C
ATOM 18 C6 G B 10 11.261 -13.026 8.919 1.00 67.00 C
ATOM 19 O6 G B 10 12.110 -12.213 8.568 1.00 67.45 O
ATOM 20 N1 G B 10 10.154 -12.549 9.609 1.00 67.63 N
ATOM 21 C2 G B 10 9.104 -13.310 10.096 1.00 67.97 C
ATOM 22 N2 G B 10 8.084 -12.769 10.759 1.00 67.96 N
ATOM 23 N3 G B 10 9.026 -14.591 9.961 1.00 67.12 N
ATOM 24 C4 G B 10 10.095 -15.036 9.283 1.00 67.40 C
ATOM 25 P A B 11 8.682 -21.479 11.363 1.00 64.09 P
ATOM 26 OP1 A B 11 8.121 -22.355 12.424 1.00 63.57 O
ATOM 27 OP2 A B 11 10.106 -21.624 10.905 1.00 62.72 O
ATOM 28 O5' A B 11 7.693 -21.553 10.088 1.00 60.81 O
TER
ATOM 2 P G A 8 3.562 -6.970 7.750 1.00 49.50 P
ATOM 3 OP1 G A 8 3.330 -5.809 8.649 1.00 48.81 O
ATOM 4 OP2 G A 8 4.812 -7.780 7.862 1.00 49.04 O
ATOM 5 O5' G A 8 2.372 -8.042 7.842 1.00 48.47 O
ATOM 6 C5' G A 8 2.448 -8.968 8.904 1.00 48.63 C
ATOM 7 C4' G A 8 2.862 -10.369 8.500 1.00 49.23 C
ATOM 8 O4' G A 8 3.532 -10.470 7.220 1.00 48.74 O
ATOM 9 C3' G A 8 3.888 -10.919 9.459 1.00 50.38 C
ATOM 10 O3' G A 8 3.295 -11.221 10.719 1.00 53.66 O
ATOM 11 C2' G A 8 4.370 -12.141 8.678 1.00 50.07 C
ATOM 12 O2' G A 8 3.512 -13.267 8.695 1.00 50.29 O
ATOM 13 C1' G A 8 4.427 -11.576 7.261 1.00 49.05 C
ATOM 14 N9 G A 8 5.784 -11.146 6.927 1.00 47.90 N
ATOM 15 C8 G A 8 6.185 -9.845 6.783 1.00 45.89 C
ATOM 16 N7 G A 8 7.436 -9.744 6.484 1.00 45.89 N
ATOM 17 C5 G A 8 7.913 -11.054 6.440 1.00 46.90 C
ATOM 18 C6 G A 8 9.221 -11.549 6.173 1.00 48.05 C
ATOM 19 O6 G A 8 10.257 -10.913 5.903 1.00 49.14 O
ATOM 20 N1 G A 8 9.297 -12.940 6.230 1.00 47.96 N
ATOM 21 C2 G A 8 8.242 -13.760 6.500 1.00 47.30 C
ATOM 22 N2 G A 8 8.583 -15.059 6.482 1.00 47.10 N
ATOM 23 N3 G A 8 6.996 -13.321 6.750 1.00 46.81 N
ATOM 24 C4 G A 8 6.905 -11.951 6.712 1.00 47.30 C
ATOM 25 P U A 9 3.556 -10.357 12.061 1.00 57.22 P
ATOM 26 OP1 U A 9 2.252 -9.977 12.685 1.00 55.78 O
ATOM 27 OP2 U A 9 4.513 -9.270 11.727 1.00 55.14 O
ATOM 28 O5' U A 9 4.242 -11.488 12.965 1.00 58.13 O
TER
ATOM 1 O3' U B 9 4.514 -15.695 13.635 1.00 68.73 O
ATOM 2 P G B 10 5.416 -17.003 13.361 1.00 70.71 P
ATOM 3 OP1 G B 10 5.073 -17.613 12.041 1.00 69.93 O
ATOM 4 OP2 G B 10 5.390 -17.772 14.623 1.00 69.78 O
ATOM 5 O5' G B 10 6.906 -16.430 13.211 1.00 70.96 O
ATOM 6 C5' G B 10 8.025 -17.306 13.066 1.00 69.55 C
ATOM 7 C4' G B 10 8.134 -17.721 11.626 1.00 67.93 C
ATOM 8 O4' G B 10 8.582 -16.632 10.784 1.00 68.04 O
ATOM 9 C3' G B 10 9.135 -18.817 11.426 1.00 66.63 C
ATOM 10 O3' G B 10 8.452 -19.977 11.918 1.00 64.63 O
ATOM 11 C2' G B 10 9.307 -18.693 9.910 1.00 68.24 C
ATOM 12 O2' G B 10 8.288 -19.377 9.186 1.00 69.36 O
ATOM 13 C1' G B 10 9.089 -17.206 9.576 1.00 68.45 C
ATOM 14 N9 G B 10 10.199 -16.357 9.063 1.00 68.46 N
ATOM 15 C8 G B 10 11.392 -16.513 8.354 1.00 67.27 C
ATOM 16 N7 G B 10 12.031 -15.371 8.150 1.00 65.48 N
ATOM 17 C5 G B 10 11.199 -14.423 8.745 1.00 66.52 C
ATOM 18 C6 G B 10 11.261 -13.026 8.919 1.00 67.00 C
ATOM 19 O6 G B 10 12.110 -12.213 8.568 1.00 67.45 O
ATOM 20 N1 G B 10 10.154 -12.549 9.609 1.00 67.63 N
ATOM 21 C2 G B 10 9.104 -13.310 10.096 1.00 67.97 C
ATOM 22 N2 G B 10 8.084 -12.769 10.759 1.00 67.96 N
ATOM 23 N3 G B 10 9.026 -14.591 9.961 1.00 67.12 N
ATOM 24 C4 G B 10 10.095 -15.036 9.283 1.00 67.40 C
ATOM 25 P A B 11 8.682 -21.479 11.363 1.00 64.09 P
ATOM 26 OP1 A B 11 8.121 -22.355 12.424 1.00 63.57 O
ATOM 27 OP2 A B 11 10.106 -21.624 10.905 1.00 62.72 O
ATOM 28 O5' A B 11 7.693 -21.553 10.088 1.00 60.81 O
TER
Atoms:
OP1: (3.330,-5.809,8.649)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
OP2: (4.812,-7.780,7.862)
C3': (3.888,-10.919,9.459)
C1': (4.427,-11.576,7.261)
C5': (2.448,-8.968,8.904)
O6: (10.257,-10.913,5.903)
O4': (3.532,-10.470,7.220)
C8: (6.185,-9.845,6.783)
C2: (8.242,-13.760,6.500)
C6: (9.221,-11.549,6.173)
C5: (7.913,-11.054,6.440)
C4: (6.905,-11.951,6.712)
P: (3.562,-6.970,7.750)
C4': (2.862,-10.369,8.500)
C2': (4.370,-12.141,8.678)
O2': (3.512,-13.267,8.695)
N1: (9.297,-12.940,6.230)
N2: (8.583,-15.059,6.482)
N3: (6.996,-13.321,6.750)
N7: (7.436,-9.744,6.484)
N9: (5.784,-11.146,6.927)
O5': (2.372,-8.042,7.842)
O3': (3.295,-11.221,10.719)
OP1: (5.073,-17.613,12.041)
OP2: (5.390,-17.772,14.623)
C3': (9.135,-18.817,11.426)
C1': (9.089,-17.206,9.576)
C5': (8.025,-17.306,13.066)
O6: (12.110,-12.213,8.568)
O4': (8.582,-16.632,10.784)
C8: (11.392,-16.513,8.354)
C2: (9.104,-13.310,10.096)
C6: (11.261,-13.026,8.919)
C5: (11.199,-14.423,8.745)
C4: (10.095,-15.036,9.283)
P: (5.416,-17.003,13.361)
C4': (8.134,-17.721,11.626)
C2': (9.307,-18.693,9.910)
O2': (8.288,-19.377,9.186)
N1: (10.154,-12.549,9.609)
N2: (8.084,-12.769,10.759)
N3: (9.026,-14.591,9.961)
N7: (12.031,-15.371,8.150)
N9: (10.199,-16.357,9.063)
O5': (6.906,-16.430,13.211)
O3': (8.452,-19.977,11.918)
OP2: (5.390,-17.772,14.623)
C3': (9.135,-18.817,11.426)
C1': (9.089,-17.206,9.576)
C5': (8.025,-17.306,13.066)
O6: (12.110,-12.213,8.568)
O4': (8.582,-16.632,10.784)
C8: (11.392,-16.513,8.354)
C2: (9.104,-13.310,10.096)
C6: (11.261,-13.026,8.919)
C5: (11.199,-14.423,8.745)
C4: (10.095,-15.036,9.283)
P: (5.416,-17.003,13.361)
C4': (8.134,-17.721,11.626)
C2': (9.307,-18.693,9.910)
O2': (8.288,-19.377,9.186)
N1: (10.154,-12.549,9.609)
N2: (8.084,-12.769,10.759)
N3: (9.026,-14.591,9.961)
N7: (12.031,-15.371,8.150)
N9: (10.199,-16.357,9.063)
O5': (6.906,-16.430,13.211)
O3': (8.452,-19.977,11.918)
Image (generated by PyMOL):