Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11088:11103
Extra
PDB:
ATOM 1 O3' A A1087 59.180 -13.513 49.268 1.00 36.93 O
ATOM 2 P U A1088 60.155 -12.220 49.376 1.00 34.26 P
ATOM 3 OP1 U A1088 61.562 -12.700 49.527 1.00 34.37 O
ATOM 4 OP2 U A1088 59.597 -11.285 50.429 1.00 34.10 O
ATOM 5 O5' U A1088 59.939 -11.599 47.948 1.00 34.36 O
ATOM 6 C5' U A1088 60.443 -10.325 47.615 1.00 34.40 C
ATOM 7 C4' U A1088 60.288 -10.093 46.161 1.00 34.53 C
ATOM 8 O4' U A1088 60.895 -11.210 45.439 1.00 34.68 O
ATOM 9 C3' U A1088 58.863 -10.039 45.719 1.00 34.49 C
ATOM 10 O3' U A1088 58.728 -9.047 44.738 1.00 34.58 O
ATOM 11 C2' U A1088 58.610 -11.427 45.143 1.00 34.58 C
ATOM 12 O2' U A1088 57.586 -11.508 44.167 1.00 34.64 O
ATOM 13 C1' U A1088 59.966 -11.797 44.582 1.00 34.74 C
ATOM 14 N1 U A1088 60.174 -13.255 44.563 1.00 34.81 N
ATOM 15 C2 U A1088 60.740 -13.885 43.454 1.00 35.01 C
ATOM 16 O2 U A1088 61.226 -13.310 42.535 1.00 35.14 O
ATOM 17 N3 U A1088 60.799 -15.237 43.470 1.00 35.08 N
ATOM 18 C4 U A1088 60.259 -16.006 44.471 1.00 34.97 C
ATOM 19 O4 U A1088 60.361 -17.208 44.316 1.00 35.07 O
ATOM 20 C5 U A1088 59.647 -15.339 45.592 1.00 34.75 C
ATOM 21 C6 U A1088 59.600 -14.002 45.599 1.00 34.68 C
ATOM 22 P G A1089 58.210 -7.614 45.171 1.00 33.46 P
ATOM 23 OP1 G A1089 57.668 -7.717 46.562 1.00 33.27 O
ATOM 24 OP2 G A1089 57.335 -7.162 44.092 1.00 33.54 O
ATOM 25 O5' G A1089 59.512 -6.764 45.194 1.00 33.53 O
TER
ATOM 1 O3' A B1102 64.986 -15.356 31.969 1.00 36.84 O
ATOM 2 P A B1103 65.315 -16.784 32.612 1.00 37.86 P
ATOM 3 OP1 A B1103 66.595 -17.216 32.019 1.00 38.11 O
ATOM 4 OP2 A B1103 64.164 -17.655 32.454 1.00 37.86 O
ATOM 5 O5' A B1103 65.512 -16.414 34.137 1.00 37.56 O
ATOM 6 C5' A B1103 64.544 -16.753 35.126 1.00 37.33 C
ATOM 7 C4' A B1103 64.508 -15.712 36.230 1.00 37.06 C
ATOM 8 O4' A B1103 63.291 -15.822 37.010 1.00 36.84 O
ATOM 9 C3' A B1103 65.588 -15.787 37.276 1.00 36.98 C
ATOM 10 O3' A B1103 66.814 -15.264 36.838 1.00 37.13 O
ATOM 11 C2' A B1103 65.000 -14.998 38.435 1.00 36.70 C
ATOM 12 O2' A B1103 65.341 -13.628 38.325 1.00 36.67 O
ATOM 13 C1' A B1103 63.483 -15.153 38.228 1.00 36.62 C
ATOM 14 N9 A B1103 62.874 -15.911 39.319 1.00 36.45 N
ATOM 15 C8 A B1103 62.127 -15.399 40.339 1.00 36.21 C
ATOM 16 N7 A B1103 61.794 -16.276 41.261 1.00 36.11 N
ATOM 17 C5 A B1103 62.365 -17.445 40.803 1.00 36.29 C
ATOM 18 C6 A B1103 62.386 -18.737 41.325 1.00 36.31 C
ATOM 19 N6 A B1103 61.777 -19.101 42.449 1.00 36.14 N
ATOM 20 N1 A B1103 63.090 -19.654 40.646 1.00 36.54 N
ATOM 21 C2 A B1103 63.714 -19.300 39.521 1.00 36.73 C
ATOM 22 N3 A B1103 63.770 -18.119 38.920 1.00 36.73 N
ATOM 23 C4 A B1103 63.074 -17.223 39.632 1.00 36.50 C
ATOM 24 P C B1104 68.177 -15.879 37.426 1.00 34.18 P
ATOM 25 OP1 C B1104 68.956 -16.387 36.272 1.00 34.49 O
ATOM 26 OP2 C B1104 67.788 -16.809 38.493 1.00 34.04 O
ATOM 27 O5' C B1104 68.912 -14.640 38.032 1.00 34.09 O
TER
ATOM 2 P U A1088 60.155 -12.220 49.376 1.00 34.26 P
ATOM 3 OP1 U A1088 61.562 -12.700 49.527 1.00 34.37 O
ATOM 4 OP2 U A1088 59.597 -11.285 50.429 1.00 34.10 O
ATOM 5 O5' U A1088 59.939 -11.599 47.948 1.00 34.36 O
ATOM 6 C5' U A1088 60.443 -10.325 47.615 1.00 34.40 C
ATOM 7 C4' U A1088 60.288 -10.093 46.161 1.00 34.53 C
ATOM 8 O4' U A1088 60.895 -11.210 45.439 1.00 34.68 O
ATOM 9 C3' U A1088 58.863 -10.039 45.719 1.00 34.49 C
ATOM 10 O3' U A1088 58.728 -9.047 44.738 1.00 34.58 O
ATOM 11 C2' U A1088 58.610 -11.427 45.143 1.00 34.58 C
ATOM 12 O2' U A1088 57.586 -11.508 44.167 1.00 34.64 O
ATOM 13 C1' U A1088 59.966 -11.797 44.582 1.00 34.74 C
ATOM 14 N1 U A1088 60.174 -13.255 44.563 1.00 34.81 N
ATOM 15 C2 U A1088 60.740 -13.885 43.454 1.00 35.01 C
ATOM 16 O2 U A1088 61.226 -13.310 42.535 1.00 35.14 O
ATOM 17 N3 U A1088 60.799 -15.237 43.470 1.00 35.08 N
ATOM 18 C4 U A1088 60.259 -16.006 44.471 1.00 34.97 C
ATOM 19 O4 U A1088 60.361 -17.208 44.316 1.00 35.07 O
ATOM 20 C5 U A1088 59.647 -15.339 45.592 1.00 34.75 C
ATOM 21 C6 U A1088 59.600 -14.002 45.599 1.00 34.68 C
ATOM 22 P G A1089 58.210 -7.614 45.171 1.00 33.46 P
ATOM 23 OP1 G A1089 57.668 -7.717 46.562 1.00 33.27 O
ATOM 24 OP2 G A1089 57.335 -7.162 44.092 1.00 33.54 O
ATOM 25 O5' G A1089 59.512 -6.764 45.194 1.00 33.53 O
TER
ATOM 1 O3' A B1102 64.986 -15.356 31.969 1.00 36.84 O
ATOM 2 P A B1103 65.315 -16.784 32.612 1.00 37.86 P
ATOM 3 OP1 A B1103 66.595 -17.216 32.019 1.00 38.11 O
ATOM 4 OP2 A B1103 64.164 -17.655 32.454 1.00 37.86 O
ATOM 5 O5' A B1103 65.512 -16.414 34.137 1.00 37.56 O
ATOM 6 C5' A B1103 64.544 -16.753 35.126 1.00 37.33 C
ATOM 7 C4' A B1103 64.508 -15.712 36.230 1.00 37.06 C
ATOM 8 O4' A B1103 63.291 -15.822 37.010 1.00 36.84 O
ATOM 9 C3' A B1103 65.588 -15.787 37.276 1.00 36.98 C
ATOM 10 O3' A B1103 66.814 -15.264 36.838 1.00 37.13 O
ATOM 11 C2' A B1103 65.000 -14.998 38.435 1.00 36.70 C
ATOM 12 O2' A B1103 65.341 -13.628 38.325 1.00 36.67 O
ATOM 13 C1' A B1103 63.483 -15.153 38.228 1.00 36.62 C
ATOM 14 N9 A B1103 62.874 -15.911 39.319 1.00 36.45 N
ATOM 15 C8 A B1103 62.127 -15.399 40.339 1.00 36.21 C
ATOM 16 N7 A B1103 61.794 -16.276 41.261 1.00 36.11 N
ATOM 17 C5 A B1103 62.365 -17.445 40.803 1.00 36.29 C
ATOM 18 C6 A B1103 62.386 -18.737 41.325 1.00 36.31 C
ATOM 19 N6 A B1103 61.777 -19.101 42.449 1.00 36.14 N
ATOM 20 N1 A B1103 63.090 -19.654 40.646 1.00 36.54 N
ATOM 21 C2 A B1103 63.714 -19.300 39.521 1.00 36.73 C
ATOM 22 N3 A B1103 63.770 -18.119 38.920 1.00 36.73 N
ATOM 23 C4 A B1103 63.074 -17.223 39.632 1.00 36.50 C
ATOM 24 P C B1104 68.177 -15.879 37.426 1.00 34.18 P
ATOM 25 OP1 C B1104 68.956 -16.387 36.272 1.00 34.49 O
ATOM 26 OP2 C B1104 67.788 -16.809 38.493 1.00 34.04 O
ATOM 27 O5' C B1104 68.912 -14.640 38.032 1.00 34.09 O
TER
Atoms:
C4: (60.259,-16.006,44.471)
N3: (60.799,-15.237,43.470)
OP1: (61.562,-12.700,49.527)
OP2: (59.597,-11.285,50.429)
C2: (60.740,-13.885,43.454)
C1': (59.966,-11.797,44.582)
C3': (58.863,-10.039,45.719)
O5': (59.939,-11.599,47.948)
O4': (60.895,-11.210,45.439)
C5': (60.443,-10.325,47.615)
P: (60.155,-12.220,49.376)
C4': (60.288,-10.093,46.161)
C2': (58.610,-11.427,45.143)
O2': (57.586,-11.508,44.167)
N1: (60.174,-13.255,44.563)
O4: (60.361,-17.208,44.316)
O2: (61.226,-13.310,42.535)
C6: (59.600,-14.002,45.599)
C5: (59.647,-15.339,45.592)
O3': (58.728,-9.047,44.738)
N3: (60.799,-15.237,43.470)
OP1: (61.562,-12.700,49.527)
OP2: (59.597,-11.285,50.429)
C2: (60.740,-13.885,43.454)
C1': (59.966,-11.797,44.582)
C3': (58.863,-10.039,45.719)
O5': (59.939,-11.599,47.948)
O4': (60.895,-11.210,45.439)
C5': (60.443,-10.325,47.615)
P: (60.155,-12.220,49.376)
C4': (60.288,-10.093,46.161)
C2': (58.610,-11.427,45.143)
O2': (57.586,-11.508,44.167)
N1: (60.174,-13.255,44.563)
O4: (60.361,-17.208,44.316)
O2: (61.226,-13.310,42.535)
C6: (59.600,-14.002,45.599)
C5: (59.647,-15.339,45.592)
O3': (58.728,-9.047,44.738)
OP1: (66.595,-17.216,32.019)
OP2: (64.164,-17.655,32.454)
C3': (65.588,-15.787,37.276)
C1': (63.483,-15.153,38.228)
C5': (64.544,-16.753,35.126)
O4': (63.291,-15.822,37.010)
C8: (62.127,-15.399,40.339)
O2': (65.341,-13.628,38.325)
C6: (62.386,-18.737,41.325)
C5: (62.365,-17.445,40.803)
C4: (63.074,-17.223,39.632)
P: (65.315,-16.784,32.612)
C4': (64.508,-15.712,36.230)
C2': (65.000,-14.998,38.435)
C2: (63.714,-19.300,39.521)
N1: (63.090,-19.654,40.646)
N3: (63.770,-18.119,38.920)
N6: (61.777,-19.101,42.449)
N7: (61.794,-16.276,41.261)
N9: (62.874,-15.911,39.319)
O5': (65.512,-16.414,34.137)
O3': (66.814,-15.264,36.838)
OP2: (64.164,-17.655,32.454)
C3': (65.588,-15.787,37.276)
C1': (63.483,-15.153,38.228)
C5': (64.544,-16.753,35.126)
O4': (63.291,-15.822,37.010)
C8: (62.127,-15.399,40.339)
O2': (65.341,-13.628,38.325)
C6: (62.386,-18.737,41.325)
C5: (62.365,-17.445,40.803)
C4: (63.074,-17.223,39.632)
P: (65.315,-16.784,32.612)
C4': (64.508,-15.712,36.230)
C2': (65.000,-14.998,38.435)
C2: (63.714,-19.300,39.521)
N1: (63.090,-19.654,40.646)
N3: (63.770,-18.119,38.920)
N6: (61.777,-19.101,42.449)
N7: (61.794,-16.276,41.261)
N9: (62.874,-15.911,39.319)
O5': (65.512,-16.414,34.137)
O3': (66.814,-15.264,36.838)
Image (generated by PyMOL):