Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5V:E20:E59
Extra
PDB:
ATOM 1 O3' A A 19 -6.471 3.672 117.435 1.00 78.44 O
ATOM 2 P G A 20 -5.230 4.296 116.623 1.00 74.66 P
ATOM 3 OP1 G A 20 -4.856 3.375 115.521 1.00 74.83 O
ATOM 4 OP2 G A 20 -4.208 4.687 117.629 1.00 79.38 O
ATOM 5 O5' G A 20 -5.835 5.618 115.977 1.00 69.20 O
ATOM 6 C5' G A 20 -6.904 5.547 115.037 1.00 70.26 C
ATOM 7 C4' G A 20 -7.299 6.935 114.594 1.00 70.94 C
ATOM 8 O4' G A 20 -7.855 7.668 115.718 1.00 63.85 O
ATOM 9 C3' G A 20 -6.142 7.794 114.115 1.00 71.40 C
ATOM 10 O3' G A 20 -5.866 7.537 112.746 1.00 75.63 O
ATOM 11 C2' G A 20 -6.665 9.204 114.355 1.00 70.84 C
ATOM 12 O2' G A 20 -7.560 9.639 113.355 1.00 70.01 O
ATOM 13 C1' G A 20 -7.427 9.019 115.668 1.00 70.01 C
ATOM 14 N9 G A 20 -6.609 9.276 116.849 1.00 67.24 N
ATOM 15 C8 G A 20 -5.901 8.354 117.582 1.00 66.41 C
ATOM 16 N7 G A 20 -5.276 8.879 118.601 1.00 65.88 N
ATOM 17 C5 G A 20 -5.586 10.231 118.534 1.00 63.78 C
ATOM 18 C6 G A 20 -5.197 11.306 119.374 1.00 62.15 C
ATOM 19 O6 G A 20 -4.475 11.278 120.378 1.00 61.79 O
ATOM 20 N1 G A 20 -5.741 12.513 118.943 1.00 62.37 N
ATOM 21 C2 G A 20 -6.555 12.666 117.846 1.00 60.51 C
ATOM 22 N2 G A 20 -6.982 13.908 117.595 1.00 61.12 N
ATOM 23 N3 G A 20 -6.925 11.674 117.056 1.00 62.88 N
ATOM 24 C4 G A 20 -6.407 10.492 117.455 1.00 65.91 C
ATOM 25 P A A 21 -4.344 7.435 112.254 1.00 75.75 P
ATOM 26 OP1 A A 21 -4.336 7.089 110.811 1.00 81.18 O
ATOM 27 OP2 A A 21 -3.630 6.566 113.221 1.00 72.30 O
ATOM 28 O5' A A 21 -3.805 8.922 112.423 1.00 78.82 O
TER
ATOM 1 O3' A B 58 1.049 12.738 121.337 1.00 59.61 O
ATOM 2 P U B 59 -0.381 12.775 122.072 1.00 57.36 P
ATOM 3 OP1 U B 59 -0.116 13.208 123.467 1.00 69.75 O
ATOM 4 OP2 U B 59 -1.067 11.481 121.825 1.00 48.32 O
ATOM 5 O5' U B 59 -1.163 13.961 121.342 1.00 59.07 O
ATOM 6 C5' U B 59 -0.676 15.293 121.456 1.00 66.09 C
ATOM 7 C4' U B 59 -1.567 16.286 120.740 1.00 69.13 C
ATOM 8 O4' U B 59 -1.650 15.935 119.332 1.00 66.57 O
ATOM 9 C3' U B 59 -3.004 16.283 121.251 1.00 72.94 C
ATOM 10 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 11 C2' U B 59 -3.820 15.453 120.259 1.00 74.77 C
ATOM 12 O2' U B 59 -5.061 16.041 119.927 1.00 89.50 O
ATOM 13 C1' U B 59 -2.965 15.549 119.000 1.00 73.63 C
ATOM 14 N1 U B 59 -2.950 14.391 118.099 1.00 72.41 N
ATOM 15 C2 U B 59 -3.611 14.542 116.895 1.00 70.81 C
ATOM 16 O2 U B 59 -4.170 15.577 116.577 1.00 68.07 O
ATOM 17 N3 U B 59 -3.596 13.442 116.078 1.00 72.67 N
ATOM 18 C4 U B 59 -2.999 12.231 116.334 1.00 73.82 C
ATOM 19 O4 U B 59 -3.074 11.333 115.494 1.00 73.80 O
ATOM 20 C5 U B 59 -2.330 12.151 117.602 1.00 76.57 C
ATOM 21 C6 U B 59 -2.328 13.212 118.421 1.00 75.96 C
ATOM 22 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 23 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 24 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 25 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
TER
ATOM 2 P G A 20 -5.230 4.296 116.623 1.00 74.66 P
ATOM 3 OP1 G A 20 -4.856 3.375 115.521 1.00 74.83 O
ATOM 4 OP2 G A 20 -4.208 4.687 117.629 1.00 79.38 O
ATOM 5 O5' G A 20 -5.835 5.618 115.977 1.00 69.20 O
ATOM 6 C5' G A 20 -6.904 5.547 115.037 1.00 70.26 C
ATOM 7 C4' G A 20 -7.299 6.935 114.594 1.00 70.94 C
ATOM 8 O4' G A 20 -7.855 7.668 115.718 1.00 63.85 O
ATOM 9 C3' G A 20 -6.142 7.794 114.115 1.00 71.40 C
ATOM 10 O3' G A 20 -5.866 7.537 112.746 1.00 75.63 O
ATOM 11 C2' G A 20 -6.665 9.204 114.355 1.00 70.84 C
ATOM 12 O2' G A 20 -7.560 9.639 113.355 1.00 70.01 O
ATOM 13 C1' G A 20 -7.427 9.019 115.668 1.00 70.01 C
ATOM 14 N9 G A 20 -6.609 9.276 116.849 1.00 67.24 N
ATOM 15 C8 G A 20 -5.901 8.354 117.582 1.00 66.41 C
ATOM 16 N7 G A 20 -5.276 8.879 118.601 1.00 65.88 N
ATOM 17 C5 G A 20 -5.586 10.231 118.534 1.00 63.78 C
ATOM 18 C6 G A 20 -5.197 11.306 119.374 1.00 62.15 C
ATOM 19 O6 G A 20 -4.475 11.278 120.378 1.00 61.79 O
ATOM 20 N1 G A 20 -5.741 12.513 118.943 1.00 62.37 N
ATOM 21 C2 G A 20 -6.555 12.666 117.846 1.00 60.51 C
ATOM 22 N2 G A 20 -6.982 13.908 117.595 1.00 61.12 N
ATOM 23 N3 G A 20 -6.925 11.674 117.056 1.00 62.88 N
ATOM 24 C4 G A 20 -6.407 10.492 117.455 1.00 65.91 C
ATOM 25 P A A 21 -4.344 7.435 112.254 1.00 75.75 P
ATOM 26 OP1 A A 21 -4.336 7.089 110.811 1.00 81.18 O
ATOM 27 OP2 A A 21 -3.630 6.566 113.221 1.00 72.30 O
ATOM 28 O5' A A 21 -3.805 8.922 112.423 1.00 78.82 O
TER
ATOM 1 O3' A B 58 1.049 12.738 121.337 1.00 59.61 O
ATOM 2 P U B 59 -0.381 12.775 122.072 1.00 57.36 P
ATOM 3 OP1 U B 59 -0.116 13.208 123.467 1.00 69.75 O
ATOM 4 OP2 U B 59 -1.067 11.481 121.825 1.00 48.32 O
ATOM 5 O5' U B 59 -1.163 13.961 121.342 1.00 59.07 O
ATOM 6 C5' U B 59 -0.676 15.293 121.456 1.00 66.09 C
ATOM 7 C4' U B 59 -1.567 16.286 120.740 1.00 69.13 C
ATOM 8 O4' U B 59 -1.650 15.935 119.332 1.00 66.57 O
ATOM 9 C3' U B 59 -3.004 16.283 121.251 1.00 72.94 C
ATOM 10 O3' U B 59 -3.471 17.552 121.719 1.00 79.84 O
ATOM 11 C2' U B 59 -3.820 15.453 120.259 1.00 74.77 C
ATOM 12 O2' U B 59 -5.061 16.041 119.927 1.00 89.50 O
ATOM 13 C1' U B 59 -2.965 15.549 119.000 1.00 73.63 C
ATOM 14 N1 U B 59 -2.950 14.391 118.099 1.00 72.41 N
ATOM 15 C2 U B 59 -3.611 14.542 116.895 1.00 70.81 C
ATOM 16 O2 U B 59 -4.170 15.577 116.577 1.00 68.07 O
ATOM 17 N3 U B 59 -3.596 13.442 116.078 1.00 72.67 N
ATOM 18 C4 U B 59 -2.999 12.231 116.334 1.00 73.82 C
ATOM 19 O4 U B 59 -3.074 11.333 115.494 1.00 73.80 O
ATOM 20 C5 U B 59 -2.330 12.151 117.602 1.00 76.57 C
ATOM 21 C6 U B 59 -2.328 13.212 118.421 1.00 75.96 C
ATOM 22 P U B 60 -4.970 17.713 122.291 1.00 66.52 P
ATOM 23 OP1 U B 60 -4.883 18.550 123.510 1.00 74.85 O
ATOM 24 OP2 U B 60 -5.614 16.378 122.368 1.00 71.58 O
ATOM 25 O5' U B 60 -5.715 18.563 121.167 1.00 77.46 O
TER
Atoms:
OP1: (-4.856,3.375,115.521)
OP2: (-4.208,4.687,117.629)
C3': (-6.142,7.794,114.115)
C1': (-7.427,9.019,115.668)
C5': (-6.904,5.547,115.037)
O6: (-4.475,11.278,120.378)
O4': (-7.855,7.668,115.718)
C8: (-5.901,8.354,117.582)
C2: (-6.555,12.666,117.846)
C6: (-5.197,11.306,119.374)
C5: (-5.586,10.231,118.534)
C4: (-6.407,10.492,117.455)
P: (-5.230,4.296,116.623)
C4': (-7.299,6.935,114.594)
C2': (-6.665,9.204,114.355)
O2': (-7.560,9.639,113.355)
N1: (-5.741,12.513,118.943)
N2: (-6.982,13.908,117.595)
N3: (-6.925,11.674,117.056)
N7: (-5.276,8.879,118.601)
N9: (-6.609,9.276,116.849)
O5': (-5.835,5.618,115.977)
O3': (-5.866,7.537,112.746)
OP2: (-4.208,4.687,117.629)
C3': (-6.142,7.794,114.115)
C1': (-7.427,9.019,115.668)
C5': (-6.904,5.547,115.037)
O6: (-4.475,11.278,120.378)
O4': (-7.855,7.668,115.718)
C8: (-5.901,8.354,117.582)
C2: (-6.555,12.666,117.846)
C6: (-5.197,11.306,119.374)
C5: (-5.586,10.231,118.534)
C4: (-6.407,10.492,117.455)
P: (-5.230,4.296,116.623)
C4': (-7.299,6.935,114.594)
C2': (-6.665,9.204,114.355)
O2': (-7.560,9.639,113.355)
N1: (-5.741,12.513,118.943)
N2: (-6.982,13.908,117.595)
N3: (-6.925,11.674,117.056)
N7: (-5.276,8.879,118.601)
N9: (-6.609,9.276,116.849)
O5': (-5.835,5.618,115.977)
O3': (-5.866,7.537,112.746)
C4: (-2.999,12.231,116.334)
N3: (-3.596,13.442,116.078)
OP1: (-0.116,13.208,123.467)
OP2: (-1.067,11.481,121.825)
C2: (-3.611,14.542,116.895)
C1': (-2.965,15.549,119.000)
C3': (-3.004,16.283,121.251)
O5': (-1.163,13.961,121.342)
O4': (-1.650,15.935,119.332)
C5': (-0.676,15.293,121.456)
P: (-0.381,12.775,122.072)
C4': (-1.567,16.286,120.740)
C2': (-3.820,15.453,120.259)
O2': (-5.061,16.041,119.927)
N1: (-2.950,14.391,118.099)
O4: (-3.074,11.333,115.494)
O2: (-4.170,15.577,116.577)
C6: (-2.328,13.212,118.421)
C5: (-2.330,12.151,117.602)
O3': (-3.471,17.552,121.719)
N3: (-3.596,13.442,116.078)
OP1: (-0.116,13.208,123.467)
OP2: (-1.067,11.481,121.825)
C2: (-3.611,14.542,116.895)
C1': (-2.965,15.549,119.000)
C3': (-3.004,16.283,121.251)
O5': (-1.163,13.961,121.342)
O4': (-1.650,15.935,119.332)
C5': (-0.676,15.293,121.456)
P: (-0.381,12.775,122.072)
C4': (-1.567,16.286,120.740)
C2': (-3.820,15.453,120.259)
O2': (-5.061,16.041,119.927)
N1: (-2.950,14.391,118.099)
O4: (-3.074,11.333,115.494)
O2: (-4.170,15.577,116.577)
C6: (-2.328,13.212,118.421)
C5: (-2.330,12.151,117.602)
O3': (-3.471,17.552,121.719)
Image (generated by PyMOL):