Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A9:A14
Extra
PDB:
ATOM 1 O3' U A 8 26.753 -19.039 13.108 1.00 25.35 O
ATOM 2 P G A 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G A 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G A 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G A 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G A 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G A 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G A 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G A 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G A 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G A 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G A 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G A 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G A 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G A 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G A 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G A 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G A 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G A 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G A 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G A 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G A 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G A 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G A 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C A 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C A 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C A 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C A 10 20.374 -15.684 11.855 1.00 32.60 O
TER
ATOM 1 O3' A B 13 16.348 -13.129 7.200 1.00 22.18 O
ATOM 2 P U B 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 3 OP1 U B 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 4 OP2 U B 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 5 O5' U B 14 18.589 -14.193 6.891 1.00 26.02 O
ATOM 6 C5' U B 14 19.218 -13.638 5.737 1.00 24.82 C
ATOM 7 C4' U B 14 20.717 -13.479 5.942 1.00 25.32 C
ATOM 8 O4' U B 14 21.019 -12.322 6.771 1.00 24.38 O
ATOM 9 C3' U B 14 21.451 -14.648 6.592 1.00 24.80 C
ATOM 10 O3' U B 14 22.706 -14.790 5.951 1.00 27.27 O
ATOM 11 C2' U B 14 21.789 -14.101 7.970 1.00 23.18 C
ATOM 12 O2' U B 14 22.959 -14.693 8.467 1.00 23.54 O
ATOM 13 C1' U B 14 22.090 -12.655 7.612 1.00 22.43 C
ATOM 14 N1 U B 14 22.144 -11.692 8.716 1.00 21.78 N
ATOM 15 C2 U B 14 22.630 -10.439 8.426 1.00 24.65 C
ATOM 16 O2 U B 14 22.992 -10.120 7.307 1.00 30.18 O
ATOM 17 N3 U B 14 22.669 -9.567 9.484 1.00 23.28 N
ATOM 18 C4 U B 14 22.264 -9.814 10.778 1.00 21.91 C
ATOM 19 O4 U B 14 22.276 -8.899 11.607 1.00 18.35 O
ATOM 20 C5 U B 14 21.777 -11.142 11.000 1.00 21.87 C
ATOM 21 C6 U B 14 21.735 -12.013 9.982 1.00 21.03 C
ATOM 22 P A B 15 22.802 -15.544 4.537 1.00 31.92 P
ATOM 23 OP1 A B 15 21.426 -15.912 4.091 1.00 29.91 O
ATOM 24 OP2 A B 15 23.838 -16.605 4.668 1.00 31.19 O
ATOM 25 O5' A B 15 23.361 -14.414 3.556 1.00 34.06 O
TER
ATOM 2 P G A 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G A 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G A 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G A 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G A 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G A 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G A 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G A 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G A 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G A 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G A 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G A 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G A 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G A 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G A 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G A 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G A 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G A 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G A 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G A 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G A 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G A 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G A 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C A 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C A 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C A 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C A 10 20.374 -15.684 11.855 1.00 32.60 O
TER
ATOM 1 O3' A B 13 16.348 -13.129 7.200 1.00 22.18 O
ATOM 2 P U B 14 17.031 -14.542 6.880 1.00 25.57 P
ATOM 3 OP1 U B 14 16.661 -14.965 5.496 1.00 23.28 O
ATOM 4 OP2 U B 14 16.709 -15.425 8.029 1.00 22.93 O
ATOM 5 O5' U B 14 18.589 -14.193 6.891 1.00 26.02 O
ATOM 6 C5' U B 14 19.218 -13.638 5.737 1.00 24.82 C
ATOM 7 C4' U B 14 20.717 -13.479 5.942 1.00 25.32 C
ATOM 8 O4' U B 14 21.019 -12.322 6.771 1.00 24.38 O
ATOM 9 C3' U B 14 21.451 -14.648 6.592 1.00 24.80 C
ATOM 10 O3' U B 14 22.706 -14.790 5.951 1.00 27.27 O
ATOM 11 C2' U B 14 21.789 -14.101 7.970 1.00 23.18 C
ATOM 12 O2' U B 14 22.959 -14.693 8.467 1.00 23.54 O
ATOM 13 C1' U B 14 22.090 -12.655 7.612 1.00 22.43 C
ATOM 14 N1 U B 14 22.144 -11.692 8.716 1.00 21.78 N
ATOM 15 C2 U B 14 22.630 -10.439 8.426 1.00 24.65 C
ATOM 16 O2 U B 14 22.992 -10.120 7.307 1.00 30.18 O
ATOM 17 N3 U B 14 22.669 -9.567 9.484 1.00 23.28 N
ATOM 18 C4 U B 14 22.264 -9.814 10.778 1.00 21.91 C
ATOM 19 O4 U B 14 22.276 -8.899 11.607 1.00 18.35 O
ATOM 20 C5 U B 14 21.777 -11.142 11.000 1.00 21.87 C
ATOM 21 C6 U B 14 21.735 -12.013 9.982 1.00 21.03 C
ATOM 22 P A B 15 22.802 -15.544 4.537 1.00 31.92 P
ATOM 23 OP1 A B 15 21.426 -15.912 4.091 1.00 29.91 O
ATOM 24 OP2 A B 15 23.838 -16.605 4.668 1.00 31.19 O
ATOM 25 O5' A B 15 23.361 -14.414 3.556 1.00 34.06 O
TER
Atoms:
OP1: (24.311,-19.211,12.615)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
C4: (22.264,-9.814,10.778)
N3: (22.669,-9.567,9.484)
OP1: (16.661,-14.965,5.496)
OP2: (16.709,-15.425,8.029)
C2: (22.630,-10.439,8.426)
C1': (22.090,-12.655,7.612)
C3': (21.451,-14.648,6.592)
O5': (18.589,-14.193,6.891)
O4': (21.019,-12.322,6.771)
C5': (19.218,-13.638,5.737)
P: (17.031,-14.542,6.880)
C4': (20.717,-13.479,5.942)
C2': (21.789,-14.101,7.970)
O2': (22.959,-14.693,8.467)
N1: (22.144,-11.692,8.716)
O4: (22.276,-8.899,11.607)
O2: (22.992,-10.120,7.307)
C6: (21.735,-12.013,9.982)
C5: (21.777,-11.142,11.000)
O3': (22.706,-14.790,5.951)
N3: (22.669,-9.567,9.484)
OP1: (16.661,-14.965,5.496)
OP2: (16.709,-15.425,8.029)
C2: (22.630,-10.439,8.426)
C1': (22.090,-12.655,7.612)
C3': (21.451,-14.648,6.592)
O5': (18.589,-14.193,6.891)
O4': (21.019,-12.322,6.771)
C5': (19.218,-13.638,5.737)
P: (17.031,-14.542,6.880)
C4': (20.717,-13.479,5.942)
C2': (21.789,-14.101,7.970)
O2': (22.959,-14.693,8.467)
N1: (22.144,-11.692,8.716)
O4: (22.276,-8.899,11.607)
O2: (22.992,-10.120,7.307)
C6: (21.735,-12.013,9.982)
C5: (21.777,-11.142,11.000)
O3': (22.706,-14.790,5.951)
Image (generated by PyMOL):