Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:B21:B54
Extra
PDB:
ATOM 1 O3' G A 20 58.314 8.968 112.803 1.00 96.85 O
ATOM 2 P G A 21 59.496 7.866 112.760 1.00 98.75 P
ATOM 3 OP1 G A 21 59.438 7.022 114.006 1.00 99.31 O
ATOM 4 OP2 G A 21 60.781 8.536 112.414 1.00 97.62 O
ATOM 5 O5' G A 21 59.074 6.986 111.514 1.00101.14 O
ATOM 6 C5' G A 21 60.029 6.370 110.754 1.00105.37 C
ATOM 7 C4' G A 21 59.769 6.713 109.269 1.00108.28 C
ATOM 8 O4' G A 21 59.616 8.153 109.167 1.00107.45 O
ATOM 9 C3' G A 21 60.932 6.364 108.398 1.00111.36 C
ATOM 10 O3' G A 21 60.850 5.052 107.922 1.00117.85 O
ATOM 11 C2' G A 21 60.987 7.432 107.331 1.00109.49 C
ATOM 12 O2' G A 21 60.129 7.259 106.252 1.00109.97 O
ATOM 13 C1' G A 21 60.470 8.637 108.117 1.00107.42 C
ATOM 14 N9 G A 21 61.416 9.630 108.645 1.00105.32 N
ATOM 15 C8 G A 21 62.116 9.576 109.830 1.00105.25 C
ATOM 16 N7 G A 21 62.828 10.649 110.054 1.00103.92 N
ATOM 17 C5 G A 21 62.575 11.480 108.973 1.00102.82 C
ATOM 18 C6 G A 21 63.048 12.803 108.706 1.00101.21 C
ATOM 19 O6 G A 21 63.784 13.530 109.402 1.00100.31 O
ATOM 20 N1 G A 21 62.578 13.268 107.495 1.00 99.23 N
ATOM 21 C2 G A 21 61.747 12.565 106.649 1.00 99.24 C
ATOM 22 N2 G A 21 61.396 13.158 105.517 1.00 97.51 N
ATOM 23 N3 G A 21 61.286 11.350 106.889 1.00101.08 N
ATOM 24 C4 G A 21 61.739 10.863 108.066 1.00103.27 C
ATOM 25 P U A 22 62.248 4.195 107.818 1.00122.58 P
ATOM 26 OP1 U A 22 62.721 4.035 109.246 1.00121.71 O
ATOM 27 OP2 U A 22 63.183 4.781 106.849 1.00122.88 O
ATOM 28 O5' U A 22 61.677 2.788 107.227 1.00126.62 O
TER
ATOM 1 O3' A B 53 69.572 6.893 112.756 1.00 90.22 O
ATOM 2 P U B 54 68.036 6.747 113.186 1.00 89.31 P
ATOM 3 OP1 U B 54 68.029 6.406 114.633 1.00 89.60 O
ATOM 4 OP2 U B 54 67.378 5.848 112.206 1.00 89.49 O
ATOM 5 O5' U B 54 67.452 8.213 113.010 1.00 90.52 O
ATOM 6 C5' U B 54 68.171 9.332 113.526 1.00 91.63 C
ATOM 7 C4' U B 54 67.560 10.625 113.040 1.00 91.47 C
ATOM 8 O4' U B 54 67.499 10.641 111.584 1.00 91.36 O
ATOM 9 C3' U B 54 66.138 10.920 113.515 1.00 90.17 C
ATOM 10 O3' U B 54 66.072 12.266 113.894 1.00 88.52 O
ATOM 11 C2' U B 54 65.289 10.753 112.267 1.00 90.90 C
ATOM 12 O2' U B 54 64.193 11.642 112.290 1.00 92.20 O
ATOM 13 C1' U B 54 66.269 11.201 111.194 1.00 90.86 C
ATOM 14 N1 U B 54 65.929 10.747 109.840 1.00 90.55 N
ATOM 15 C2 U B 54 66.010 11.686 108.834 1.00 89.81 C
ATOM 16 O2 U B 54 66.366 12.822 109.035 1.00 89.98 O
ATOM 17 N3 U B 54 65.646 11.244 107.590 1.00 88.63 N
ATOM 18 C4 U B 54 65.209 9.977 107.260 1.00 89.09 C
ATOM 19 O4 U B 54 64.898 9.733 106.096 1.00 89.05 O
ATOM 20 C5 U B 54 65.161 9.048 108.356 1.00 89.72 C
ATOM 21 C6 U B 54 65.523 9.451 109.577 1.00 90.66 C
ATOM 22 P A B 55 66.398 12.642 115.399 1.00 88.52 P
ATOM 23 OP1 A B 55 66.138 11.387 116.149 1.00 88.37 O
ATOM 24 OP2 A B 55 65.685 13.888 115.789 1.00 88.57 O
ATOM 25 O5' A B 55 67.971 12.909 115.349 1.00 87.08 O
TER
ATOM 2 P G A 21 59.496 7.866 112.760 1.00 98.75 P
ATOM 3 OP1 G A 21 59.438 7.022 114.006 1.00 99.31 O
ATOM 4 OP2 G A 21 60.781 8.536 112.414 1.00 97.62 O
ATOM 5 O5' G A 21 59.074 6.986 111.514 1.00101.14 O
ATOM 6 C5' G A 21 60.029 6.370 110.754 1.00105.37 C
ATOM 7 C4' G A 21 59.769 6.713 109.269 1.00108.28 C
ATOM 8 O4' G A 21 59.616 8.153 109.167 1.00107.45 O
ATOM 9 C3' G A 21 60.932 6.364 108.398 1.00111.36 C
ATOM 10 O3' G A 21 60.850 5.052 107.922 1.00117.85 O
ATOM 11 C2' G A 21 60.987 7.432 107.331 1.00109.49 C
ATOM 12 O2' G A 21 60.129 7.259 106.252 1.00109.97 O
ATOM 13 C1' G A 21 60.470 8.637 108.117 1.00107.42 C
ATOM 14 N9 G A 21 61.416 9.630 108.645 1.00105.32 N
ATOM 15 C8 G A 21 62.116 9.576 109.830 1.00105.25 C
ATOM 16 N7 G A 21 62.828 10.649 110.054 1.00103.92 N
ATOM 17 C5 G A 21 62.575 11.480 108.973 1.00102.82 C
ATOM 18 C6 G A 21 63.048 12.803 108.706 1.00101.21 C
ATOM 19 O6 G A 21 63.784 13.530 109.402 1.00100.31 O
ATOM 20 N1 G A 21 62.578 13.268 107.495 1.00 99.23 N
ATOM 21 C2 G A 21 61.747 12.565 106.649 1.00 99.24 C
ATOM 22 N2 G A 21 61.396 13.158 105.517 1.00 97.51 N
ATOM 23 N3 G A 21 61.286 11.350 106.889 1.00101.08 N
ATOM 24 C4 G A 21 61.739 10.863 108.066 1.00103.27 C
ATOM 25 P U A 22 62.248 4.195 107.818 1.00122.58 P
ATOM 26 OP1 U A 22 62.721 4.035 109.246 1.00121.71 O
ATOM 27 OP2 U A 22 63.183 4.781 106.849 1.00122.88 O
ATOM 28 O5' U A 22 61.677 2.788 107.227 1.00126.62 O
TER
ATOM 1 O3' A B 53 69.572 6.893 112.756 1.00 90.22 O
ATOM 2 P U B 54 68.036 6.747 113.186 1.00 89.31 P
ATOM 3 OP1 U B 54 68.029 6.406 114.633 1.00 89.60 O
ATOM 4 OP2 U B 54 67.378 5.848 112.206 1.00 89.49 O
ATOM 5 O5' U B 54 67.452 8.213 113.010 1.00 90.52 O
ATOM 6 C5' U B 54 68.171 9.332 113.526 1.00 91.63 C
ATOM 7 C4' U B 54 67.560 10.625 113.040 1.00 91.47 C
ATOM 8 O4' U B 54 67.499 10.641 111.584 1.00 91.36 O
ATOM 9 C3' U B 54 66.138 10.920 113.515 1.00 90.17 C
ATOM 10 O3' U B 54 66.072 12.266 113.894 1.00 88.52 O
ATOM 11 C2' U B 54 65.289 10.753 112.267 1.00 90.90 C
ATOM 12 O2' U B 54 64.193 11.642 112.290 1.00 92.20 O
ATOM 13 C1' U B 54 66.269 11.201 111.194 1.00 90.86 C
ATOM 14 N1 U B 54 65.929 10.747 109.840 1.00 90.55 N
ATOM 15 C2 U B 54 66.010 11.686 108.834 1.00 89.81 C
ATOM 16 O2 U B 54 66.366 12.822 109.035 1.00 89.98 O
ATOM 17 N3 U B 54 65.646 11.244 107.590 1.00 88.63 N
ATOM 18 C4 U B 54 65.209 9.977 107.260 1.00 89.09 C
ATOM 19 O4 U B 54 64.898 9.733 106.096 1.00 89.05 O
ATOM 20 C5 U B 54 65.161 9.048 108.356 1.00 89.72 C
ATOM 21 C6 U B 54 65.523 9.451 109.577 1.00 90.66 C
ATOM 22 P A B 55 66.398 12.642 115.399 1.00 88.52 P
ATOM 23 OP1 A B 55 66.138 11.387 116.149 1.00 88.37 O
ATOM 24 OP2 A B 55 65.685 13.888 115.789 1.00 88.57 O
ATOM 25 O5' A B 55 67.971 12.909 115.349 1.00 87.08 O
TER
Atoms:
OP1: (59.438,7.022,114.006)
OP2: (60.781,8.536,112.414)
C3': (60.932,6.364,108.398)
C1': (60.470,8.637,108.117)
C5': (60.029,6.370,110.754)
O6: (63.784,13.530,109.402)
O4': (59.616,8.153,109.167)
C8: (62.116,9.576,109.830)
C2: (61.747,12.565,106.649)
C6: (63.048,12.803,108.706)
C5: (62.575,11.480,108.973)
C4: (61.739,10.863,108.066)
P: (59.496,7.866,112.760)
C4': (59.769,6.713,109.269)
C2': (60.987,7.432,107.331)
O2': (60.129,7.259,106.252)
N1: (62.578,13.268,107.495)
N2: (61.396,13.158,105.517)
N3: (61.286,11.350,106.889)
N7: (62.828,10.649,110.054)
N9: (61.416,9.630,108.645)
O5': (59.074,6.986,111.514)
O3': (60.850,5.052,107.922)
OP2: (60.781,8.536,112.414)
C3': (60.932,6.364,108.398)
C1': (60.470,8.637,108.117)
C5': (60.029,6.370,110.754)
O6: (63.784,13.530,109.402)
O4': (59.616,8.153,109.167)
C8: (62.116,9.576,109.830)
C2: (61.747,12.565,106.649)
C6: (63.048,12.803,108.706)
C5: (62.575,11.480,108.973)
C4: (61.739,10.863,108.066)
P: (59.496,7.866,112.760)
C4': (59.769,6.713,109.269)
C2': (60.987,7.432,107.331)
O2': (60.129,7.259,106.252)
N1: (62.578,13.268,107.495)
N2: (61.396,13.158,105.517)
N3: (61.286,11.350,106.889)
N7: (62.828,10.649,110.054)
N9: (61.416,9.630,108.645)
O5': (59.074,6.986,111.514)
O3': (60.850,5.052,107.922)
C4: (65.209,9.977,107.260)
N3: (65.646,11.244,107.590)
OP1: (68.029,6.406,114.633)
OP2: (67.378,5.848,112.206)
C2: (66.010,11.686,108.834)
C1': (66.269,11.201,111.194)
C3': (66.138,10.920,113.515)
O5': (67.452,8.213,113.010)
O4': (67.499,10.641,111.584)
C5': (68.171,9.332,113.526)
P: (68.036,6.747,113.186)
C4': (67.560,10.625,113.040)
C2': (65.289,10.753,112.267)
O2': (64.193,11.642,112.290)
N1: (65.929,10.747,109.840)
O4: (64.898,9.733,106.096)
O2: (66.366,12.822,109.035)
C6: (65.523,9.451,109.577)
C5: (65.161,9.048,108.356)
O3': (66.072,12.266,113.894)
N3: (65.646,11.244,107.590)
OP1: (68.029,6.406,114.633)
OP2: (67.378,5.848,112.206)
C2: (66.010,11.686,108.834)
C1': (66.269,11.201,111.194)
C3': (66.138,10.920,113.515)
O5': (67.452,8.213,113.010)
O4': (67.499,10.641,111.584)
C5': (68.171,9.332,113.526)
P: (68.036,6.747,113.186)
C4': (67.560,10.625,113.040)
C2': (65.289,10.753,112.267)
O2': (64.193,11.642,112.290)
N1: (65.929,10.747,109.840)
O4: (64.898,9.733,106.096)
O2: (66.366,12.822,109.035)
C6: (65.523,9.451,109.577)
C5: (65.161,9.048,108.356)
O3': (66.072,12.266,113.894)
Image (generated by PyMOL):