Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1J8G:A4:A5
Extra
PDB:
ATOM 1 O3' G A 3 0.734 28.716 34.972 1.00 3.86 O
ATOM 2 P G A 4 0.897 28.503 36.545 1.00 4.76 P
ATOM 3 OP1 G A 4 0.925 29.883 37.106 1.00 7.33 O
ATOM 4 OP2 G A 4 2.000 27.600 36.829 1.00 6.31 O
ATOM 5 O5' G A 4 -0.428 27.736 36.994 1.00 4.34 O
ATOM 6 C5' G A 4 -1.658 28.464 36.924 1.00 4.66 C
ATOM 7 C4' G A 4 -2.818 27.545 37.238 1.00 4.37 C
ATOM 8 O4' G A 4 -2.914 26.526 36.199 1.00 4.81 O
ATOM 9 C3' G A 4 -2.716 26.737 38.502 1.00 4.29 C
ATOM 10 O3' G A 4 -3.025 27.579 39.623 1.00 4.61 O
ATOM 11 C2' G A 4 -3.686 25.597 38.273 1.00 5.63 C
ATOM 12 O2' G A 4 -4.985 25.991 38.459 1.00 8.92 O
ATOM 13 C1' G A 4 -3.430 25.354 36.761 1.00 4.70 C
ATOM 14 N9 G A 4 -2.452 24.282 36.547 1.00 3.93 N
ATOM 15 C8 G A 4 -1.081 24.383 36.447 1.00 3.70 C
ATOM 16 N7 G A 4 -0.500 23.237 36.185 1.00 3.40 N
ATOM 17 C5 G A 4 -1.547 22.319 36.145 1.00 3.08 C
ATOM 18 C6 G A 4 -1.541 20.924 35.891 1.00 2.95 C
ATOM 19 O6 G A 4 -0.572 20.214 35.643 1.00 3.04 O
ATOM 20 N1 G A 4 -2.826 20.395 35.966 1.00 3.12 N
ATOM 21 C2 G A 4 -3.994 21.111 36.211 1.00 3.37 C
ATOM 22 N2 G A 4 -5.121 20.417 36.277 1.00 4.03 N
ATOM 23 N3 G A 4 -3.992 22.420 36.413 1.00 3.54 N
ATOM 24 C4 G A 4 -2.750 22.964 36.362 1.00 3.42 C
ATOM 25 P U A 5 -2.677 27.214 41.116 1.00 5.76 P
ATOM 26 OP1 U A 5 -3.469 26.055 41.571 1.00 9.33 O
ATOM 27 OP2 U A 5 -2.879 28.444 41.932 1.00 8.23 O
ATOM 28 O5' U A 5 -1.100 26.952 40.989 1.00 6.79 O
TER
ATOM 1 O3' G B 4 -3.025 27.579 39.623 1.00 4.61 O
ATOM 2 P U B 5 -2.677 27.214 41.116 1.00 5.76 P
ATOM 3 OP1 U B 5 -3.469 26.055 41.571 1.00 9.33 O
ATOM 4 OP2 U B 5 -2.879 28.444 41.932 1.00 8.23 O
ATOM 5 O5' U B 5 -1.100 26.952 40.989 1.00 6.79 O
ATOM 6 C5' U B 5 -0.281 27.014 42.186 1.00 8.18 C
ATOM 7 C4' U B 5 1.122 26.507 41.864 1.00 6.47 C
ATOM 8 O4' U B 5 1.024 25.080 41.757 1.00 5.60 O
ATOM 9 C3' U B 5 1.800 27.024 40.562 1.00 6.42 C
ATOM 10 O3' U B 5 3.229 27.090 40.716 1.00 7.47 O
ATOM 11 C2' U B 5 1.545 25.910 39.604 1.00 5.33 C
ATOM 12 O2' U B 5 2.499 25.783 38.556 1.00 6.66 O
ATOM 13 C1' U B 5 1.654 24.697 40.532 1.00 4.97 C
ATOM 14 N1 U B 5 0.960 23.533 40.007 1.00 4.61 N
ATOM 15 C2 U B 5 1.721 22.449 39.559 1.00 4.47 C
ATOM 16 O2 U B 5 2.942 22.437 39.548 1.00 5.24 O
ATOM 17 N3 U B 5 1.005 21.396 39.117 1.00 4.62 N
ATOM 18 C4 U B 5 -0.376 21.254 39.113 1.00 4.72 C
ATOM 19 O4 U B 5 -0.843 20.225 38.719 1.00 5.16 O
ATOM 20 C5 U B 5 -1.083 22.421 39.591 1.00 4.78 C
ATOM 21 C6 U B 5 -0.406 23.480 40.028 1.00 4.78 C
TER
ATOM 2 P G A 4 0.897 28.503 36.545 1.00 4.76 P
ATOM 3 OP1 G A 4 0.925 29.883 37.106 1.00 7.33 O
ATOM 4 OP2 G A 4 2.000 27.600 36.829 1.00 6.31 O
ATOM 5 O5' G A 4 -0.428 27.736 36.994 1.00 4.34 O
ATOM 6 C5' G A 4 -1.658 28.464 36.924 1.00 4.66 C
ATOM 7 C4' G A 4 -2.818 27.545 37.238 1.00 4.37 C
ATOM 8 O4' G A 4 -2.914 26.526 36.199 1.00 4.81 O
ATOM 9 C3' G A 4 -2.716 26.737 38.502 1.00 4.29 C
ATOM 10 O3' G A 4 -3.025 27.579 39.623 1.00 4.61 O
ATOM 11 C2' G A 4 -3.686 25.597 38.273 1.00 5.63 C
ATOM 12 O2' G A 4 -4.985 25.991 38.459 1.00 8.92 O
ATOM 13 C1' G A 4 -3.430 25.354 36.761 1.00 4.70 C
ATOM 14 N9 G A 4 -2.452 24.282 36.547 1.00 3.93 N
ATOM 15 C8 G A 4 -1.081 24.383 36.447 1.00 3.70 C
ATOM 16 N7 G A 4 -0.500 23.237 36.185 1.00 3.40 N
ATOM 17 C5 G A 4 -1.547 22.319 36.145 1.00 3.08 C
ATOM 18 C6 G A 4 -1.541 20.924 35.891 1.00 2.95 C
ATOM 19 O6 G A 4 -0.572 20.214 35.643 1.00 3.04 O
ATOM 20 N1 G A 4 -2.826 20.395 35.966 1.00 3.12 N
ATOM 21 C2 G A 4 -3.994 21.111 36.211 1.00 3.37 C
ATOM 22 N2 G A 4 -5.121 20.417 36.277 1.00 4.03 N
ATOM 23 N3 G A 4 -3.992 22.420 36.413 1.00 3.54 N
ATOM 24 C4 G A 4 -2.750 22.964 36.362 1.00 3.42 C
ATOM 25 P U A 5 -2.677 27.214 41.116 1.00 5.76 P
ATOM 26 OP1 U A 5 -3.469 26.055 41.571 1.00 9.33 O
ATOM 27 OP2 U A 5 -2.879 28.444 41.932 1.00 8.23 O
ATOM 28 O5' U A 5 -1.100 26.952 40.989 1.00 6.79 O
TER
ATOM 1 O3' G B 4 -3.025 27.579 39.623 1.00 4.61 O
ATOM 2 P U B 5 -2.677 27.214 41.116 1.00 5.76 P
ATOM 3 OP1 U B 5 -3.469 26.055 41.571 1.00 9.33 O
ATOM 4 OP2 U B 5 -2.879 28.444 41.932 1.00 8.23 O
ATOM 5 O5' U B 5 -1.100 26.952 40.989 1.00 6.79 O
ATOM 6 C5' U B 5 -0.281 27.014 42.186 1.00 8.18 C
ATOM 7 C4' U B 5 1.122 26.507 41.864 1.00 6.47 C
ATOM 8 O4' U B 5 1.024 25.080 41.757 1.00 5.60 O
ATOM 9 C3' U B 5 1.800 27.024 40.562 1.00 6.42 C
ATOM 10 O3' U B 5 3.229 27.090 40.716 1.00 7.47 O
ATOM 11 C2' U B 5 1.545 25.910 39.604 1.00 5.33 C
ATOM 12 O2' U B 5 2.499 25.783 38.556 1.00 6.66 O
ATOM 13 C1' U B 5 1.654 24.697 40.532 1.00 4.97 C
ATOM 14 N1 U B 5 0.960 23.533 40.007 1.00 4.61 N
ATOM 15 C2 U B 5 1.721 22.449 39.559 1.00 4.47 C
ATOM 16 O2 U B 5 2.942 22.437 39.548 1.00 5.24 O
ATOM 17 N3 U B 5 1.005 21.396 39.117 1.00 4.62 N
ATOM 18 C4 U B 5 -0.376 21.254 39.113 1.00 4.72 C
ATOM 19 O4 U B 5 -0.843 20.225 38.719 1.00 5.16 O
ATOM 20 C5 U B 5 -1.083 22.421 39.591 1.00 4.78 C
ATOM 21 C6 U B 5 -0.406 23.480 40.028 1.00 4.78 C
TER
Atoms:
OP1: (0.925,29.883,37.106)
OP2: (2.000,27.600,36.829)
C3': (-2.716,26.737,38.502)
C1': (-3.430,25.354,36.761)
C5': (-1.658,28.464,36.924)
O6: (-0.572,20.214,35.643)
O4': (-2.914,26.526,36.199)
C8: (-1.081,24.383,36.447)
C2: (-3.994,21.111,36.211)
C6: (-1.541,20.924,35.891)
C5: (-1.547,22.319,36.145)
C4: (-2.750,22.964,36.362)
P: (0.897,28.503,36.545)
C4': (-2.818,27.545,37.238)
C2': (-3.686,25.597,38.273)
O2': (-4.985,25.991,38.459)
N1: (-2.826,20.395,35.966)
N2: (-5.121,20.417,36.277)
N3: (-3.992,22.420,36.413)
N7: (-0.500,23.237,36.185)
N9: (-2.452,24.282,36.547)
O5': (-0.428,27.736,36.994)
O3': (-3.025,27.579,39.623)
OP2: (2.000,27.600,36.829)
C3': (-2.716,26.737,38.502)
C1': (-3.430,25.354,36.761)
C5': (-1.658,28.464,36.924)
O6: (-0.572,20.214,35.643)
O4': (-2.914,26.526,36.199)
C8: (-1.081,24.383,36.447)
C2: (-3.994,21.111,36.211)
C6: (-1.541,20.924,35.891)
C5: (-1.547,22.319,36.145)
C4: (-2.750,22.964,36.362)
P: (0.897,28.503,36.545)
C4': (-2.818,27.545,37.238)
C2': (-3.686,25.597,38.273)
O2': (-4.985,25.991,38.459)
N1: (-2.826,20.395,35.966)
N2: (-5.121,20.417,36.277)
N3: (-3.992,22.420,36.413)
N7: (-0.500,23.237,36.185)
N9: (-2.452,24.282,36.547)
O5': (-0.428,27.736,36.994)
O3': (-3.025,27.579,39.623)
C4: (-0.376,21.254,39.113)
N3: (1.005,21.396,39.117)
OP1: (-3.469,26.055,41.571)
OP2: (-2.879,28.444,41.932)
C2: (1.721,22.449,39.559)
C1': (1.654,24.697,40.532)
C3': (1.800,27.024,40.562)
O5': (-1.100,26.952,40.989)
O4': (1.024,25.080,41.757)
C5': (-0.281,27.014,42.186)
P: (-2.677,27.214,41.116)
C4': (1.122,26.507,41.864)
C2': (1.545,25.910,39.604)
O2': (2.499,25.783,38.556)
N1: (0.960,23.533,40.007)
O4: (-0.843,20.225,38.719)
O2: (2.942,22.437,39.548)
C6: (-0.406,23.480,40.028)
C5: (-1.083,22.421,39.591)
O3': (3.229,27.090,40.716)
N3: (1.005,21.396,39.117)
OP1: (-3.469,26.055,41.571)
OP2: (-2.879,28.444,41.932)
C2: (1.721,22.449,39.559)
C1': (1.654,24.697,40.532)
C3': (1.800,27.024,40.562)
O5': (-1.100,26.952,40.989)
O4': (1.024,25.080,41.757)
C5': (-0.281,27.014,42.186)
P: (-2.677,27.214,41.116)
C4': (1.122,26.507,41.864)
C2': (1.545,25.910,39.604)
O2': (2.499,25.783,38.556)
N1: (0.960,23.533,40.007)
O4: (-0.843,20.225,38.719)
O2: (2.942,22.437,39.548)
C6: (-0.406,23.480,40.028)
C5: (-1.083,22.421,39.591)
O3': (3.229,27.090,40.716)
Image (generated by PyMOL):