Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0592:0536
Extra
PDB:
ATOM 1 O3' A A 591 -5.260 134.573 88.737 1.00 92.48 O
ATOM 2 P G A 592 -4.318 135.666 89.448 1.00 92.93 P
ATOM 3 OP1 G A 592 -5.060 136.316 90.564 1.00 92.36 O
ATOM 4 OP2 G A 592 -3.758 136.498 88.350 1.00 92.72 O
ATOM 5 O5' G A 592 -3.144 134.791 90.084 1.00 90.83 O
ATOM 6 C5' G A 592 -2.340 135.290 91.173 1.00 86.03 C
ATOM 7 C4' G A 592 -1.562 134.158 91.814 1.00 82.85 C
ATOM 8 O4' G A 592 -0.838 133.421 90.792 1.00 81.66 O
ATOM 9 C3' G A 592 -0.519 134.588 92.843 1.00 82.01 C
ATOM 10 O3' G A 592 -0.330 133.586 93.845 1.00 82.24 O
ATOM 11 C2' G A 592 0.754 134.644 92.004 1.00 81.42 C
ATOM 12 O2' G A 592 1.930 134.488 92.775 1.00 81.59 O
ATOM 13 C1' G A 592 0.545 133.443 91.082 1.00 80.38 C
ATOM 14 N9 G A 592 1.280 133.487 89.820 1.00 78.21 N
ATOM 15 C8 G A 592 1.550 134.592 89.046 1.00 77.50 C
ATOM 16 N7 G A 592 2.229 134.309 87.967 1.00 76.86 N
ATOM 17 C5 G A 592 2.422 132.936 88.031 1.00 76.49 C
ATOM 18 C6 G A 592 3.098 132.061 87.141 1.00 75.70 C
ATOM 19 O6 G A 592 3.690 132.335 86.091 1.00 74.55 O
ATOM 20 N1 G A 592 3.043 130.745 87.582 1.00 75.80 N
ATOM 21 C2 G A 592 2.428 130.321 88.734 1.00 76.71 C
ATOM 22 N2 G A 592 2.482 129.007 88.979 1.00 76.93 N
ATOM 23 N3 G A 592 1.806 131.126 89.580 1.00 76.38 N
ATOM 24 C4 G A 592 1.840 132.412 89.167 1.00 77.11 C
ATOM 25 P C A 593 -1.591 132.987 94.643 1.00 80.88 P
ATOM 26 OP1 C A 593 -2.644 134.032 94.739 1.00 81.56 O
ATOM 27 OP2 C A 593 -1.062 132.374 95.891 1.00 79.08 O
ATOM 28 O5' C A 593 -2.101 131.826 93.668 1.00 77.42 O
TER
ATOM 1 O3' A B 535 5.879 139.580 92.401 1.00 66.71 O
ATOM 2 P U B 536 4.470 139.450 91.637 1.00 67.11 P
ATOM 3 OP1 U B 536 4.014 140.840 91.404 1.00 66.62 O
ATOM 4 OP2 U B 536 3.592 138.494 92.378 1.00 65.94 O
ATOM 5 O5' U B 536 4.845 138.807 90.228 1.00 67.09 O
ATOM 6 C5' U B 536 5.880 139.382 89.419 1.00 67.62 C
ATOM 7 C4' U B 536 6.141 138.526 88.202 1.00 69.53 C
ATOM 8 O4' U B 536 6.544 137.197 88.640 1.00 68.11 O
ATOM 9 C3' U B 536 4.976 138.322 87.229 1.00 70.76 C
ATOM 10 O3' U B 536 5.487 138.222 85.895 1.00 75.09 O
ATOM 11 C2' U B 536 4.445 136.957 87.648 1.00 69.76 C
ATOM 12 O2' U B 536 3.722 136.300 86.621 1.00 69.97 O
ATOM 13 C1' U B 536 5.755 136.237 87.977 1.00 67.47 C
ATOM 14 N1 U B 536 5.635 135.036 88.818 1.00 64.13 N
ATOM 15 C2 U B 536 5.975 133.823 88.247 1.00 62.51 C
ATOM 16 O2 U B 536 6.452 133.728 87.132 1.00 62.06 O
ATOM 17 N3 U B 536 5.743 132.723 89.034 1.00 62.19 N
ATOM 18 C4 U B 536 5.233 132.714 90.316 1.00 63.37 C
ATOM 19 O4 U B 536 4.971 131.637 90.857 1.00 64.09 O
ATOM 20 C5 U B 536 4.964 134.010 90.858 1.00 63.51 C
ATOM 21 C6 U B 536 5.171 135.100 90.110 1.00 63.93 C
ATOM 22 P A B 537 4.991 139.247 84.751 1.00 79.79 P
ATOM 23 OP1 A B 537 6.031 139.277 83.681 1.00 79.18 O
ATOM 24 OP2 A B 537 4.582 140.520 85.416 1.00 79.13 O
ATOM 25 O5' A B 537 3.691 138.567 84.124 1.00 78.77 O
TER
ATOM 2 P G A 592 -4.318 135.666 89.448 1.00 92.93 P
ATOM 3 OP1 G A 592 -5.060 136.316 90.564 1.00 92.36 O
ATOM 4 OP2 G A 592 -3.758 136.498 88.350 1.00 92.72 O
ATOM 5 O5' G A 592 -3.144 134.791 90.084 1.00 90.83 O
ATOM 6 C5' G A 592 -2.340 135.290 91.173 1.00 86.03 C
ATOM 7 C4' G A 592 -1.562 134.158 91.814 1.00 82.85 C
ATOM 8 O4' G A 592 -0.838 133.421 90.792 1.00 81.66 O
ATOM 9 C3' G A 592 -0.519 134.588 92.843 1.00 82.01 C
ATOM 10 O3' G A 592 -0.330 133.586 93.845 1.00 82.24 O
ATOM 11 C2' G A 592 0.754 134.644 92.004 1.00 81.42 C
ATOM 12 O2' G A 592 1.930 134.488 92.775 1.00 81.59 O
ATOM 13 C1' G A 592 0.545 133.443 91.082 1.00 80.38 C
ATOM 14 N9 G A 592 1.280 133.487 89.820 1.00 78.21 N
ATOM 15 C8 G A 592 1.550 134.592 89.046 1.00 77.50 C
ATOM 16 N7 G A 592 2.229 134.309 87.967 1.00 76.86 N
ATOM 17 C5 G A 592 2.422 132.936 88.031 1.00 76.49 C
ATOM 18 C6 G A 592 3.098 132.061 87.141 1.00 75.70 C
ATOM 19 O6 G A 592 3.690 132.335 86.091 1.00 74.55 O
ATOM 20 N1 G A 592 3.043 130.745 87.582 1.00 75.80 N
ATOM 21 C2 G A 592 2.428 130.321 88.734 1.00 76.71 C
ATOM 22 N2 G A 592 2.482 129.007 88.979 1.00 76.93 N
ATOM 23 N3 G A 592 1.806 131.126 89.580 1.00 76.38 N
ATOM 24 C4 G A 592 1.840 132.412 89.167 1.00 77.11 C
ATOM 25 P C A 593 -1.591 132.987 94.643 1.00 80.88 P
ATOM 26 OP1 C A 593 -2.644 134.032 94.739 1.00 81.56 O
ATOM 27 OP2 C A 593 -1.062 132.374 95.891 1.00 79.08 O
ATOM 28 O5' C A 593 -2.101 131.826 93.668 1.00 77.42 O
TER
ATOM 1 O3' A B 535 5.879 139.580 92.401 1.00 66.71 O
ATOM 2 P U B 536 4.470 139.450 91.637 1.00 67.11 P
ATOM 3 OP1 U B 536 4.014 140.840 91.404 1.00 66.62 O
ATOM 4 OP2 U B 536 3.592 138.494 92.378 1.00 65.94 O
ATOM 5 O5' U B 536 4.845 138.807 90.228 1.00 67.09 O
ATOM 6 C5' U B 536 5.880 139.382 89.419 1.00 67.62 C
ATOM 7 C4' U B 536 6.141 138.526 88.202 1.00 69.53 C
ATOM 8 O4' U B 536 6.544 137.197 88.640 1.00 68.11 O
ATOM 9 C3' U B 536 4.976 138.322 87.229 1.00 70.76 C
ATOM 10 O3' U B 536 5.487 138.222 85.895 1.00 75.09 O
ATOM 11 C2' U B 536 4.445 136.957 87.648 1.00 69.76 C
ATOM 12 O2' U B 536 3.722 136.300 86.621 1.00 69.97 O
ATOM 13 C1' U B 536 5.755 136.237 87.977 1.00 67.47 C
ATOM 14 N1 U B 536 5.635 135.036 88.818 1.00 64.13 N
ATOM 15 C2 U B 536 5.975 133.823 88.247 1.00 62.51 C
ATOM 16 O2 U B 536 6.452 133.728 87.132 1.00 62.06 O
ATOM 17 N3 U B 536 5.743 132.723 89.034 1.00 62.19 N
ATOM 18 C4 U B 536 5.233 132.714 90.316 1.00 63.37 C
ATOM 19 O4 U B 536 4.971 131.637 90.857 1.00 64.09 O
ATOM 20 C5 U B 536 4.964 134.010 90.858 1.00 63.51 C
ATOM 21 C6 U B 536 5.171 135.100 90.110 1.00 63.93 C
ATOM 22 P A B 537 4.991 139.247 84.751 1.00 79.79 P
ATOM 23 OP1 A B 537 6.031 139.277 83.681 1.00 79.18 O
ATOM 24 OP2 A B 537 4.582 140.520 85.416 1.00 79.13 O
ATOM 25 O5' A B 537 3.691 138.567 84.124 1.00 78.77 O
TER
Atoms:
OP1: (-5.060,136.316,90.564)
OP2: (-3.758,136.498,88.350)
C3': (-0.519,134.588,92.843)
C1': (0.545,133.443,91.082)
C5': (-2.340,135.290,91.173)
O6: (3.690,132.335,86.091)
O4': (-0.838,133.421,90.792)
C8: (1.550,134.592,89.046)
C2: (2.428,130.321,88.734)
C6: (3.098,132.061,87.141)
C5: (2.422,132.936,88.031)
C4: (1.840,132.412,89.167)
P: (-4.318,135.666,89.448)
C4': (-1.562,134.158,91.814)
C2': (0.754,134.644,92.004)
O2': (1.930,134.488,92.775)
N1: (3.043,130.745,87.582)
N2: (2.482,129.007,88.979)
N3: (1.806,131.126,89.580)
N7: (2.229,134.309,87.967)
N9: (1.280,133.487,89.820)
O5': (-3.144,134.791,90.084)
O3': (-0.330,133.586,93.845)
OP2: (-3.758,136.498,88.350)
C3': (-0.519,134.588,92.843)
C1': (0.545,133.443,91.082)
C5': (-2.340,135.290,91.173)
O6: (3.690,132.335,86.091)
O4': (-0.838,133.421,90.792)
C8: (1.550,134.592,89.046)
C2: (2.428,130.321,88.734)
C6: (3.098,132.061,87.141)
C5: (2.422,132.936,88.031)
C4: (1.840,132.412,89.167)
P: (-4.318,135.666,89.448)
C4': (-1.562,134.158,91.814)
C2': (0.754,134.644,92.004)
O2': (1.930,134.488,92.775)
N1: (3.043,130.745,87.582)
N2: (2.482,129.007,88.979)
N3: (1.806,131.126,89.580)
N7: (2.229,134.309,87.967)
N9: (1.280,133.487,89.820)
O5': (-3.144,134.791,90.084)
O3': (-0.330,133.586,93.845)
C4: (5.233,132.714,90.316)
N3: (5.743,132.723,89.034)
OP1: (4.014,140.840,91.404)
OP2: (3.592,138.494,92.378)
C2: (5.975,133.823,88.247)
C1': (5.755,136.237,87.977)
C3': (4.976,138.322,87.229)
O5': (4.845,138.807,90.228)
O4': (6.544,137.197,88.640)
C5': (5.880,139.382,89.419)
P: (4.470,139.450,91.637)
C4': (6.141,138.526,88.202)
C2': (4.445,136.957,87.648)
O2': (3.722,136.300,86.621)
N1: (5.635,135.036,88.818)
O4: (4.971,131.637,90.857)
O2: (6.452,133.728,87.132)
C6: (5.171,135.100,90.110)
C5: (4.964,134.010,90.858)
O3': (5.487,138.222,85.895)
N3: (5.743,132.723,89.034)
OP1: (4.014,140.840,91.404)
OP2: (3.592,138.494,92.378)
C2: (5.975,133.823,88.247)
C1': (5.755,136.237,87.977)
C3': (4.976,138.322,87.229)
O5': (4.845,138.807,90.228)
O4': (6.544,137.197,88.640)
C5': (5.880,139.382,89.419)
P: (4.470,139.450,91.637)
C4': (6.141,138.526,88.202)
C2': (4.445,136.957,87.648)
O2': (3.722,136.300,86.621)
N1: (5.635,135.036,88.818)
O4: (4.971,131.637,90.857)
O2: (6.452,133.728,87.132)
C6: (5.171,135.100,90.110)
C5: (4.964,134.010,90.858)
O3': (5.487,138.222,85.895)
Image (generated by PyMOL):