Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1004:A1006
Extra
PDB:
ATOM 1 O3' A A1003 -100.882-111.258 -13.009 1.00 0.01 O
ATOM 2 P G A1004 -100.740-111.690 -14.528 1.00 0.01 P
ATOM 3 OP1 G A1004 -101.724-112.751 -14.745 1.00 0.01 O
ATOM 4 OP2 G A1004 -99.317-111.967 -14.782 1.00 0.01 O
ATOM 5 O5' G A1004 -101.162-110.378 -15.297 1.00 0.01 O
ATOM 6 C5' G A1004 -102.461-109.853 -15.175 1.00 0.01 C
ATOM 7 C4' G A1004 -103.288-110.204 -16.367 1.00 0.01 C
ATOM 8 O4' G A1004 -104.645-109.774 -16.120 1.00 0.01 O
ATOM 9 C3' G A1004 -102.870-109.529 -17.674 1.00 0.01 C
ATOM 10 O3' G A1004 -103.315-110.315 -18.795 1.00 0.01 O
ATOM 11 C2' G A1004 -103.695-108.270 -17.618 1.00 0.01 C
ATOM 12 O2' G A1004 -103.844-107.623 -18.854 1.00 0.01 O
ATOM 13 C1' G A1004 -105.015-108.840 -17.102 1.00 0.01 C
ATOM 14 N9 G A1004 -105.909-107.873 -16.481 1.00 0.01 N
ATOM 15 C8 G A1004 -105.749-106.533 -16.273 1.00 0.01 C
ATOM 16 N7 G A1004 -106.773-105.987 -15.671 1.00 0.01 N
ATOM 17 C5 G A1004 -107.649-107.048 -15.464 1.00 0.01 C
ATOM 18 C6 G A1004 -108.927-107.081 -14.862 1.00 0.01 C
ATOM 19 O6 G A1004 -109.561-106.128 -14.360 1.00 0.01 O
ATOM 20 N1 G A1004 -109.439-108.364 -14.888 1.00 0.01 N
ATOM 21 C2 G A1004 -108.787-109.429 -15.415 1.00 0.01 C
ATOM 22 N2 G A1004 -109.389-110.609 -15.373 1.00 0.01 N
ATOM 23 N3 G A1004 -107.617-109.402 -15.966 1.00 0.01 N
ATOM 24 C4 G A1004 -107.115-108.194 -15.960 1.00 0.01 C
ATOM 25 P U A1005 -102.337-111.359 -19.532 1.00 0.01 P
ATOM 26 OP1 U A1005 -103.013-112.649 -19.562 1.00 0.01 O
ATOM 27 OP2 U A1005 -101.035-111.273 -18.889 1.00 0.01 O
ATOM 28 O5' U A1005 -102.247-110.799 -20.986 1.00 0.01 O
TER
ATOM 1 O3' U B1005 -103.770-108.633 -23.767 1.00 0.01 O
ATOM 2 P C B1006 -105.029-109.614 -23.901 1.00 0.01 P
ATOM 3 OP1 C B1006 -104.728-110.566 -24.970 1.00 0.01 O
ATOM 4 OP2 C B1006 -106.209-108.790 -24.024 1.00 0.01 O
ATOM 5 O5' C B1006 -105.053-110.349 -22.512 1.00 0.01 O
ATOM 6 C5' C B1006 -105.590-109.719 -21.377 1.00 0.01 C
ATOM 7 C4' C B1006 -106.834-110.412 -20.926 1.00 0.01 C
ATOM 8 O4' C B1006 -107.131-110.051 -19.563 1.00 0.01 O
ATOM 9 C3' C B1006 -108.093-110.052 -21.667 1.00 0.01 C
ATOM 10 O3' C B1006 -108.191-110.702 -22.908 1.00 0.01 O
ATOM 11 C2' C B1006 -109.171-110.448 -20.677 1.00 0.01 C
ATOM 12 O2' C B1006 -109.363-111.848 -20.689 1.00 0.01 O
ATOM 13 C1' C B1006 -108.514-110.074 -19.358 1.00 0.01 C
ATOM 14 N1 C B1006 -108.901-108.780 -18.902 1.00 0.01 N
ATOM 15 C2 C B1006 -110.037-108.695 -18.170 1.00 0.01 C
ATOM 16 O2 C B1006 -110.626-109.768 -18.026 1.00 0.01 O
ATOM 17 N3 C B1006 -110.454-107.506 -17.679 1.00 0.01 N
ATOM 18 C4 C B1006 -109.725-106.449 -17.926 1.00 0.01 C
ATOM 19 N4 C B1006 -110.129-105.299 -17.463 1.00 0.01 N
ATOM 20 C5 C B1006 -108.529-106.519 -18.664 1.00 0.01 C
ATOM 21 C6 C B1006 -108.141-107.711 -19.121 1.00 0.01 C
ATOM 22 P A B1007 -109.276-110.226 -23.962 1.00 0.01 P
ATOM 23 OP1 A B1007 -109.182-111.117 -25.112 1.00 0.01 O
ATOM 24 OP2 A B1007 -109.102-108.780 -24.169 1.00 0.01 O
ATOM 25 O5' A B1007 -110.606-110.487 -23.197 1.00 0.01 O
TER
ATOM 2 P G A1004 -100.740-111.690 -14.528 1.00 0.01 P
ATOM 3 OP1 G A1004 -101.724-112.751 -14.745 1.00 0.01 O
ATOM 4 OP2 G A1004 -99.317-111.967 -14.782 1.00 0.01 O
ATOM 5 O5' G A1004 -101.162-110.378 -15.297 1.00 0.01 O
ATOM 6 C5' G A1004 -102.461-109.853 -15.175 1.00 0.01 C
ATOM 7 C4' G A1004 -103.288-110.204 -16.367 1.00 0.01 C
ATOM 8 O4' G A1004 -104.645-109.774 -16.120 1.00 0.01 O
ATOM 9 C3' G A1004 -102.870-109.529 -17.674 1.00 0.01 C
ATOM 10 O3' G A1004 -103.315-110.315 -18.795 1.00 0.01 O
ATOM 11 C2' G A1004 -103.695-108.270 -17.618 1.00 0.01 C
ATOM 12 O2' G A1004 -103.844-107.623 -18.854 1.00 0.01 O
ATOM 13 C1' G A1004 -105.015-108.840 -17.102 1.00 0.01 C
ATOM 14 N9 G A1004 -105.909-107.873 -16.481 1.00 0.01 N
ATOM 15 C8 G A1004 -105.749-106.533 -16.273 1.00 0.01 C
ATOM 16 N7 G A1004 -106.773-105.987 -15.671 1.00 0.01 N
ATOM 17 C5 G A1004 -107.649-107.048 -15.464 1.00 0.01 C
ATOM 18 C6 G A1004 -108.927-107.081 -14.862 1.00 0.01 C
ATOM 19 O6 G A1004 -109.561-106.128 -14.360 1.00 0.01 O
ATOM 20 N1 G A1004 -109.439-108.364 -14.888 1.00 0.01 N
ATOM 21 C2 G A1004 -108.787-109.429 -15.415 1.00 0.01 C
ATOM 22 N2 G A1004 -109.389-110.609 -15.373 1.00 0.01 N
ATOM 23 N3 G A1004 -107.617-109.402 -15.966 1.00 0.01 N
ATOM 24 C4 G A1004 -107.115-108.194 -15.960 1.00 0.01 C
ATOM 25 P U A1005 -102.337-111.359 -19.532 1.00 0.01 P
ATOM 26 OP1 U A1005 -103.013-112.649 -19.562 1.00 0.01 O
ATOM 27 OP2 U A1005 -101.035-111.273 -18.889 1.00 0.01 O
ATOM 28 O5' U A1005 -102.247-110.799 -20.986 1.00 0.01 O
TER
ATOM 1 O3' U B1005 -103.770-108.633 -23.767 1.00 0.01 O
ATOM 2 P C B1006 -105.029-109.614 -23.901 1.00 0.01 P
ATOM 3 OP1 C B1006 -104.728-110.566 -24.970 1.00 0.01 O
ATOM 4 OP2 C B1006 -106.209-108.790 -24.024 1.00 0.01 O
ATOM 5 O5' C B1006 -105.053-110.349 -22.512 1.00 0.01 O
ATOM 6 C5' C B1006 -105.590-109.719 -21.377 1.00 0.01 C
ATOM 7 C4' C B1006 -106.834-110.412 -20.926 1.00 0.01 C
ATOM 8 O4' C B1006 -107.131-110.051 -19.563 1.00 0.01 O
ATOM 9 C3' C B1006 -108.093-110.052 -21.667 1.00 0.01 C
ATOM 10 O3' C B1006 -108.191-110.702 -22.908 1.00 0.01 O
ATOM 11 C2' C B1006 -109.171-110.448 -20.677 1.00 0.01 C
ATOM 12 O2' C B1006 -109.363-111.848 -20.689 1.00 0.01 O
ATOM 13 C1' C B1006 -108.514-110.074 -19.358 1.00 0.01 C
ATOM 14 N1 C B1006 -108.901-108.780 -18.902 1.00 0.01 N
ATOM 15 C2 C B1006 -110.037-108.695 -18.170 1.00 0.01 C
ATOM 16 O2 C B1006 -110.626-109.768 -18.026 1.00 0.01 O
ATOM 17 N3 C B1006 -110.454-107.506 -17.679 1.00 0.01 N
ATOM 18 C4 C B1006 -109.725-106.449 -17.926 1.00 0.01 C
ATOM 19 N4 C B1006 -110.129-105.299 -17.463 1.00 0.01 N
ATOM 20 C5 C B1006 -108.529-106.519 -18.664 1.00 0.01 C
ATOM 21 C6 C B1006 -108.141-107.711 -19.121 1.00 0.01 C
ATOM 22 P A B1007 -109.276-110.226 -23.962 1.00 0.01 P
ATOM 23 OP1 A B1007 -109.182-111.117 -25.112 1.00 0.01 O
ATOM 24 OP2 A B1007 -109.102-108.780 -24.169 1.00 0.01 O
ATOM 25 O5' A B1007 -110.606-110.487 -23.197 1.00 0.01 O
TER
Atoms:
OP1: (-101.724,-112.751,-14.745)
OP2: (-99.317,-111.967,-14.782)
C3': (-102.870,-109.529,-17.674)
C1': (-105.015,-108.840,-17.102)
C5': (-102.461,-109.853,-15.175)
O6: (-109.561,-106.128,-14.360)
O4': (-104.645,-109.774,-16.120)
C8: (-105.749,-106.533,-16.273)
C2: (-108.787,-109.429,-15.415)
C6: (-108.927,-107.081,-14.862)
C5: (-107.649,-107.048,-15.464)
C4: (-107.115,-108.194,-15.960)
P: (-100.740,-111.690,-14.528)
C4': (-103.288,-110.204,-16.367)
C2': (-103.695,-108.270,-17.618)
O2': (-103.844,-107.623,-18.854)
N1: (-109.439,-108.364,-14.888)
N2: (-109.389,-110.609,-15.373)
N3: (-107.617,-109.402,-15.966)
N7: (-106.773,-105.987,-15.671)
N9: (-105.909,-107.873,-16.481)
O5': (-101.162,-110.378,-15.297)
O3': (-103.315,-110.315,-18.795)
OP2: (-99.317,-111.967,-14.782)
C3': (-102.870,-109.529,-17.674)
C1': (-105.015,-108.840,-17.102)
C5': (-102.461,-109.853,-15.175)
O6: (-109.561,-106.128,-14.360)
O4': (-104.645,-109.774,-16.120)
C8: (-105.749,-106.533,-16.273)
C2: (-108.787,-109.429,-15.415)
C6: (-108.927,-107.081,-14.862)
C5: (-107.649,-107.048,-15.464)
C4: (-107.115,-108.194,-15.960)
P: (-100.740,-111.690,-14.528)
C4': (-103.288,-110.204,-16.367)
C2': (-103.695,-108.270,-17.618)
O2': (-103.844,-107.623,-18.854)
N1: (-109.439,-108.364,-14.888)
N2: (-109.389,-110.609,-15.373)
N3: (-107.617,-109.402,-15.966)
N7: (-106.773,-105.987,-15.671)
N9: (-105.909,-107.873,-16.481)
O5': (-101.162,-110.378,-15.297)
O3': (-103.315,-110.315,-18.795)
C2: (-110.037,-108.695,-18.170)
OP1: (-104.728,-110.566,-24.970)
OP2: (-106.209,-108.790,-24.024)
C4: (-109.725,-106.449,-17.926)
O5': (-105.053,-110.349,-22.512)
C3': (-108.093,-110.052,-21.667)
C1': (-108.514,-110.074,-19.358)
O4': (-107.131,-110.051,-19.563)
C5': (-105.590,-109.719,-21.377)
P: (-105.029,-109.614,-23.901)
O2: (-110.626,-109.768,-18.026)
C4': (-106.834,-110.412,-20.926)
C2': (-109.171,-110.448,-20.677)
O2': (-109.363,-111.848,-20.689)
N1: (-108.901,-108.780,-18.902)
N3: (-110.454,-107.506,-17.679)
N4: (-110.129,-105.299,-17.463)
C6: (-108.141,-107.711,-19.121)
C5: (-108.529,-106.519,-18.664)
O3': (-108.191,-110.702,-22.908)
OP1: (-104.728,-110.566,-24.970)
OP2: (-106.209,-108.790,-24.024)
C4: (-109.725,-106.449,-17.926)
O5': (-105.053,-110.349,-22.512)
C3': (-108.093,-110.052,-21.667)
C1': (-108.514,-110.074,-19.358)
O4': (-107.131,-110.051,-19.563)
C5': (-105.590,-109.719,-21.377)
P: (-105.029,-109.614,-23.901)
O2: (-110.626,-109.768,-18.026)
C4': (-106.834,-110.412,-20.926)
C2': (-109.171,-110.448,-20.677)
O2': (-109.363,-111.848,-20.689)
N1: (-108.901,-108.780,-18.902)
N3: (-110.454,-107.506,-17.679)
N4: (-110.129,-105.299,-17.463)
C6: (-108.141,-107.711,-19.121)
C5: (-108.529,-106.519,-18.664)
O3': (-108.191,-110.702,-22.908)
Image (generated by PyMOL):