Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A59:A61
Extra
PDB:
ATOM 1 O3' U A 58 -14.158 -70.513 49.407 1.00 0.01 O
ATOM 2 P G A 59 -13.760 -71.730 48.479 1.00 0.01 P
ATOM 3 OP1 G A 59 -12.363 -72.101 48.826 1.00 0.01 O
ATOM 4 OP2 G A 59 -14.073 -71.340 47.082 1.00 0.01 O
ATOM 5 O5' G A 59 -14.778 -72.849 48.957 1.00 0.01 O
ATOM 6 C5' G A 59 -14.703 -73.383 50.264 1.00 0.01 C
ATOM 7 C4' G A 59 -14.279 -74.817 50.222 1.00 0.01 C
ATOM 8 O4' G A 59 -15.399 -75.605 49.761 1.00 0.01 O
ATOM 9 C3' G A 59 -13.107 -75.101 49.291 1.00 0.01 C
ATOM 10 O3' G A 59 -12.031 -75.825 50.004 1.00 0.01 O
ATOM 11 C2' G A 59 -13.737 -75.815 48.076 1.00 0.01 C
ATOM 12 O2' G A 59 -12.980 -76.845 47.510 1.00 0.01 O
ATOM 13 C1' G A 59 -15.097 -76.310 48.585 1.00 0.01 C
ATOM 14 N9 G A 59 -16.205 -76.068 47.649 1.00 0.07 N
ATOM 15 C8 G A 59 -16.158 -75.302 46.511 1.00 0.07 C
ATOM 16 N7 G A 59 -17.281 -75.212 45.857 1.00 0.07 N
ATOM 17 C5 G A 59 -18.133 -75.962 46.620 1.00 0.07 C
ATOM 18 C6 G A 59 -19.497 -76.241 46.382 1.00 0.07 C
ATOM 19 O6 G A 59 -20.152 -75.818 45.417 1.00 0.07 O
ATOM 20 N1 G A 59 -20.068 -77.074 47.358 1.00 0.07 N
ATOM 21 C2 G A 59 -19.376 -77.550 48.443 1.00 0.07 C
ATOM 22 N2 G A 59 -20.070 -78.311 49.303 1.00 0.07 N
ATOM 23 N3 G A 59 -18.091 -77.284 48.662 1.00 0.07 N
ATOM 24 C4 G A 59 -17.516 -76.495 47.722 1.00 0.07 C
ATOM 25 P C A 60 -11.639 -77.395 49.829 1.00 0.01 P
ATOM 26 OP1 C A 60 -12.874 -78.207 49.977 1.00 0.01 O
ATOM 27 OP2 C A 60 -10.532 -77.646 50.756 1.00 0.01 O
ATOM 28 O5' C A 60 -11.090 -77.477 48.356 1.00 0.01 O
TER
ATOM 1 O3' C B 60 -9.788 -76.783 44.946 1.00 0.01 O
ATOM 2 P U B 61 -10.802 -75.584 44.638 1.00 0.01 P
ATOM 3 OP1 U B 61 -10.118 -74.641 43.735 1.00 0.01 O
ATOM 4 OP2 U B 61 -11.299 -75.098 45.929 1.00 0.01 O
ATOM 5 O5' U B 61 -11.970 -76.303 43.869 1.00 0.01 O
ATOM 6 C5' U B 61 -11.789 -76.750 42.535 1.00 0.01 C
ATOM 7 C4' U B 61 -13.036 -76.560 41.714 1.00 0.01 C
ATOM 8 O4' U B 61 -14.042 -77.518 42.122 1.00 0.01 O
ATOM 9 C3' U B 61 -13.676 -75.199 41.830 1.00 0.01 C
ATOM 10 O3' U B 61 -14.073 -74.778 40.555 1.00 0.01 O
ATOM 11 C2' U B 61 -14.910 -75.429 42.712 1.00 0.01 C
ATOM 12 O2' U B 61 -15.992 -74.574 42.426 1.00 0.01 O
ATOM 13 C1' U B 61 -15.258 -76.862 42.398 1.00 0.01 C
ATOM 14 N1 U B 61 -15.902 -77.584 43.487 1.00 0.03 N
ATOM 15 C2 U B 61 -17.139 -78.040 43.216 1.00 0.03 C
ATOM 16 O2 U B 61 -17.635 -77.752 42.153 1.00 0.03 O
ATOM 17 N3 U B 61 -17.750 -78.808 44.186 1.00 0.03 N
ATOM 18 C4 U B 61 -17.224 -79.157 45.409 1.00 0.03 C
ATOM 19 O4 U B 61 -17.878 -79.829 46.201 1.00 0.03 O
ATOM 20 C5 U B 61 -15.914 -78.645 45.625 1.00 0.03 C
ATOM 21 C6 U B 61 -15.309 -77.910 44.667 1.00 0.03 C
ATOM 22 P A B 62 -13.476 -73.433 39.967 1.00 0.01 P
ATOM 23 OP1 A B 62 -12.250 -73.790 39.241 1.00 0.01 O
ATOM 24 OP2 A B 62 -13.393 -72.455 41.103 1.00 0.01 O
ATOM 25 O5' A B 62 -14.608 -72.989 38.942 1.00 0.01 O
TER
ATOM 2 P G A 59 -13.760 -71.730 48.479 1.00 0.01 P
ATOM 3 OP1 G A 59 -12.363 -72.101 48.826 1.00 0.01 O
ATOM 4 OP2 G A 59 -14.073 -71.340 47.082 1.00 0.01 O
ATOM 5 O5' G A 59 -14.778 -72.849 48.957 1.00 0.01 O
ATOM 6 C5' G A 59 -14.703 -73.383 50.264 1.00 0.01 C
ATOM 7 C4' G A 59 -14.279 -74.817 50.222 1.00 0.01 C
ATOM 8 O4' G A 59 -15.399 -75.605 49.761 1.00 0.01 O
ATOM 9 C3' G A 59 -13.107 -75.101 49.291 1.00 0.01 C
ATOM 10 O3' G A 59 -12.031 -75.825 50.004 1.00 0.01 O
ATOM 11 C2' G A 59 -13.737 -75.815 48.076 1.00 0.01 C
ATOM 12 O2' G A 59 -12.980 -76.845 47.510 1.00 0.01 O
ATOM 13 C1' G A 59 -15.097 -76.310 48.585 1.00 0.01 C
ATOM 14 N9 G A 59 -16.205 -76.068 47.649 1.00 0.07 N
ATOM 15 C8 G A 59 -16.158 -75.302 46.511 1.00 0.07 C
ATOM 16 N7 G A 59 -17.281 -75.212 45.857 1.00 0.07 N
ATOM 17 C5 G A 59 -18.133 -75.962 46.620 1.00 0.07 C
ATOM 18 C6 G A 59 -19.497 -76.241 46.382 1.00 0.07 C
ATOM 19 O6 G A 59 -20.152 -75.818 45.417 1.00 0.07 O
ATOM 20 N1 G A 59 -20.068 -77.074 47.358 1.00 0.07 N
ATOM 21 C2 G A 59 -19.376 -77.550 48.443 1.00 0.07 C
ATOM 22 N2 G A 59 -20.070 -78.311 49.303 1.00 0.07 N
ATOM 23 N3 G A 59 -18.091 -77.284 48.662 1.00 0.07 N
ATOM 24 C4 G A 59 -17.516 -76.495 47.722 1.00 0.07 C
ATOM 25 P C A 60 -11.639 -77.395 49.829 1.00 0.01 P
ATOM 26 OP1 C A 60 -12.874 -78.207 49.977 1.00 0.01 O
ATOM 27 OP2 C A 60 -10.532 -77.646 50.756 1.00 0.01 O
ATOM 28 O5' C A 60 -11.090 -77.477 48.356 1.00 0.01 O
TER
ATOM 1 O3' C B 60 -9.788 -76.783 44.946 1.00 0.01 O
ATOM 2 P U B 61 -10.802 -75.584 44.638 1.00 0.01 P
ATOM 3 OP1 U B 61 -10.118 -74.641 43.735 1.00 0.01 O
ATOM 4 OP2 U B 61 -11.299 -75.098 45.929 1.00 0.01 O
ATOM 5 O5' U B 61 -11.970 -76.303 43.869 1.00 0.01 O
ATOM 6 C5' U B 61 -11.789 -76.750 42.535 1.00 0.01 C
ATOM 7 C4' U B 61 -13.036 -76.560 41.714 1.00 0.01 C
ATOM 8 O4' U B 61 -14.042 -77.518 42.122 1.00 0.01 O
ATOM 9 C3' U B 61 -13.676 -75.199 41.830 1.00 0.01 C
ATOM 10 O3' U B 61 -14.073 -74.778 40.555 1.00 0.01 O
ATOM 11 C2' U B 61 -14.910 -75.429 42.712 1.00 0.01 C
ATOM 12 O2' U B 61 -15.992 -74.574 42.426 1.00 0.01 O
ATOM 13 C1' U B 61 -15.258 -76.862 42.398 1.00 0.01 C
ATOM 14 N1 U B 61 -15.902 -77.584 43.487 1.00 0.03 N
ATOM 15 C2 U B 61 -17.139 -78.040 43.216 1.00 0.03 C
ATOM 16 O2 U B 61 -17.635 -77.752 42.153 1.00 0.03 O
ATOM 17 N3 U B 61 -17.750 -78.808 44.186 1.00 0.03 N
ATOM 18 C4 U B 61 -17.224 -79.157 45.409 1.00 0.03 C
ATOM 19 O4 U B 61 -17.878 -79.829 46.201 1.00 0.03 O
ATOM 20 C5 U B 61 -15.914 -78.645 45.625 1.00 0.03 C
ATOM 21 C6 U B 61 -15.309 -77.910 44.667 1.00 0.03 C
ATOM 22 P A B 62 -13.476 -73.433 39.967 1.00 0.01 P
ATOM 23 OP1 A B 62 -12.250 -73.790 39.241 1.00 0.01 O
ATOM 24 OP2 A B 62 -13.393 -72.455 41.103 1.00 0.01 O
ATOM 25 O5' A B 62 -14.608 -72.989 38.942 1.00 0.01 O
TER
Atoms:
OP1: (-12.363,-72.101,48.826)
OP2: (-14.073,-71.340,47.082)
C3': (-13.107,-75.101,49.291)
C1': (-15.097,-76.310,48.585)
C5': (-14.703,-73.383,50.264)
O6: (-20.152,-75.818,45.417)
O4': (-15.399,-75.605,49.761)
C8: (-16.158,-75.302,46.511)
C2: (-19.376,-77.550,48.443)
C6: (-19.497,-76.241,46.382)
C5: (-18.133,-75.962,46.620)
C4: (-17.516,-76.495,47.722)
P: (-13.760,-71.730,48.479)
C4': (-14.279,-74.817,50.222)
C2': (-13.737,-75.815,48.076)
O2': (-12.980,-76.845,47.510)
N1: (-20.068,-77.074,47.358)
N2: (-20.070,-78.311,49.303)
N3: (-18.091,-77.284,48.662)
N7: (-17.281,-75.212,45.857)
N9: (-16.205,-76.068,47.649)
O5': (-14.778,-72.849,48.957)
O3': (-12.031,-75.825,50.004)
OP2: (-14.073,-71.340,47.082)
C3': (-13.107,-75.101,49.291)
C1': (-15.097,-76.310,48.585)
C5': (-14.703,-73.383,50.264)
O6: (-20.152,-75.818,45.417)
O4': (-15.399,-75.605,49.761)
C8: (-16.158,-75.302,46.511)
C2: (-19.376,-77.550,48.443)
C6: (-19.497,-76.241,46.382)
C5: (-18.133,-75.962,46.620)
C4: (-17.516,-76.495,47.722)
P: (-13.760,-71.730,48.479)
C4': (-14.279,-74.817,50.222)
C2': (-13.737,-75.815,48.076)
O2': (-12.980,-76.845,47.510)
N1: (-20.068,-77.074,47.358)
N2: (-20.070,-78.311,49.303)
N3: (-18.091,-77.284,48.662)
N7: (-17.281,-75.212,45.857)
N9: (-16.205,-76.068,47.649)
O5': (-14.778,-72.849,48.957)
O3': (-12.031,-75.825,50.004)
C4: (-17.224,-79.157,45.409)
N3: (-17.750,-78.808,44.186)
OP1: (-10.118,-74.641,43.735)
OP2: (-11.299,-75.098,45.929)
C2: (-17.139,-78.040,43.216)
C1': (-15.258,-76.862,42.398)
C3': (-13.676,-75.199,41.830)
O5': (-11.970,-76.303,43.869)
O4': (-14.042,-77.518,42.122)
C5': (-11.789,-76.750,42.535)
P: (-10.802,-75.584,44.638)
C4': (-13.036,-76.560,41.714)
C2': (-14.910,-75.429,42.712)
O2': (-15.992,-74.574,42.426)
N1: (-15.902,-77.584,43.487)
O4: (-17.878,-79.829,46.201)
O2: (-17.635,-77.752,42.153)
C6: (-15.309,-77.910,44.667)
C5: (-15.914,-78.645,45.625)
O3': (-14.073,-74.778,40.555)
N3: (-17.750,-78.808,44.186)
OP1: (-10.118,-74.641,43.735)
OP2: (-11.299,-75.098,45.929)
C2: (-17.139,-78.040,43.216)
C1': (-15.258,-76.862,42.398)
C3': (-13.676,-75.199,41.830)
O5': (-11.970,-76.303,43.869)
O4': (-14.042,-77.518,42.122)
C5': (-11.789,-76.750,42.535)
P: (-10.802,-75.584,44.638)
C4': (-13.036,-76.560,41.714)
C2': (-14.910,-75.429,42.712)
O2': (-15.992,-74.574,42.426)
N1: (-15.902,-77.584,43.487)
O4: (-17.878,-79.829,46.201)
O2: (-17.635,-77.752,42.153)
C6: (-15.309,-77.910,44.667)
C5: (-15.914,-78.645,45.625)
O3': (-14.073,-74.778,40.555)
Image (generated by PyMOL):