Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B35:B36
Extra
PDB:
ATOM 1 O3' G A 34 -19.698 53.878 -7.475 1.00109.03 O
ATOM 2 P G A 35 -18.897 52.571 -6.958 1.00108.86 P
ATOM 3 OP1 G A 35 -18.938 51.519 -8.009 1.00108.74 O
ATOM 4 OP2 G A 35 -19.371 52.258 -5.585 1.00108.15 O
ATOM 5 O5' G A 35 -17.391 53.065 -6.828 1.00107.94 O
ATOM 6 C5' G A 35 -16.609 53.306 -7.988 1.00107.37 C
ATOM 7 C4' G A 35 -15.221 53.736 -7.595 1.00106.93 C
ATOM 8 O4' G A 35 -15.303 54.980 -6.853 1.00106.50 O
ATOM 9 C3' G A 35 -14.462 52.809 -6.658 1.00107.26 C
ATOM 10 O3' G A 35 -13.846 51.708 -7.310 1.00107.96 O
ATOM 11 C2' G A 35 -13.444 53.749 -6.028 1.00106.48 C
ATOM 12 O2' G A 35 -12.321 53.982 -6.853 1.00105.34 O
ATOM 13 C1' G A 35 -14.261 55.031 -5.894 1.00105.93 C
ATOM 14 N9 G A 35 -14.833 55.121 -4.553 1.00105.24 N
ATOM 15 C8 G A 35 -16.120 54.861 -4.146 1.00104.47 C
ATOM 16 N7 G A 35 -16.284 55.004 -2.853 1.00104.74 N
ATOM 17 C5 G A 35 -15.030 55.391 -2.386 1.00105.27 C
ATOM 18 C6 G A 35 -14.552 55.706 -1.048 1.00105.70 C
ATOM 19 O6 G A 35 -15.159 55.708 0.036 1.00107.42 O
ATOM 20 N1 G A 35 -13.208 56.044 -1.059 1.00105.21 N
ATOM 21 C2 G A 35 -12.419 56.083 -2.170 1.00104.70 C
ATOM 22 N2 G A 35 -11.160 56.433 -1.963 1.00105.27 N
ATOM 23 N3 G A 35 -12.830 55.801 -3.391 1.00104.33 N
ATOM 24 C4 G A 35 -14.131 55.468 -3.426 1.00104.93 C
ATOM 25 P C A 36 -13.325 50.470 -6.428 1.00107.52 P
ATOM 26 OP1 C A 36 -12.912 49.379 -7.345 1.00108.61 O
ATOM 27 OP2 C A 36 -14.343 50.205 -5.382 1.00106.47 O
ATOM 28 O5' C A 36 -12.022 51.042 -5.711 1.00106.99 O
TER
ATOM 1 O3' G B 35 -13.846 51.708 -7.310 1.00107.96 O
ATOM 2 P C B 36 -13.325 50.470 -6.428 1.00107.52 P
ATOM 3 OP1 C B 36 -12.912 49.379 -7.345 1.00108.61 O
ATOM 4 OP2 C B 36 -14.343 50.205 -5.382 1.00106.47 O
ATOM 5 O5' C B 36 -12.022 51.042 -5.711 1.00106.99 O
ATOM 6 C5' C B 36 -10.911 51.499 -6.474 1.00105.46 C
ATOM 7 C4' C B 36 -9.775 51.897 -5.561 1.00104.96 C
ATOM 8 O4' C B 36 -10.178 53.028 -4.744 1.00104.93 O
ATOM 9 C3' C B 36 -9.348 50.848 -4.551 1.00104.61 C
ATOM 10 O3' C B 36 -8.453 49.896 -5.098 1.00104.51 O
ATOM 11 C2' C B 36 -8.704 51.680 -3.451 1.00104.18 C
ATOM 12 O2' C B 36 -7.360 52.022 -3.729 1.00104.33 O
ATOM 13 C1' C B 36 -9.567 52.940 -3.468 1.00103.63 C
ATOM 14 N1 C B 36 -10.615 52.928 -2.429 1.00102.47 N
ATOM 15 C2 C B 36 -10.222 53.116 -1.103 1.00101.76 C
ATOM 16 O2 C B 36 -9.025 53.276 -0.859 1.00101.55 O
ATOM 17 N3 C B 36 -11.152 53.116 -0.125 1.00100.84 N
ATOM 18 C4 C B 36 -12.433 52.938 -0.425 1.00100.30 C
ATOM 19 N4 C B 36 -13.302 52.950 0.584 1.00 98.99 N
ATOM 20 C5 C B 36 -12.874 52.740 -1.772 1.00100.79 C
ATOM 21 C6 C B 36 -11.936 52.743 -2.737 1.00101.88 C
ATOM 22 P U B 37 -8.424 48.414 -4.483 1.00105.59 P
ATOM 23 OP1 U B 37 -7.379 47.620 -5.185 1.00105.12 O
ATOM 24 OP2 U B 37 -9.833 47.931 -4.465 1.00105.33 O
ATOM 25 O5' U B 37 -7.943 48.641 -2.979 1.00104.98 O
TER
ATOM 2 P G A 35 -18.897 52.571 -6.958 1.00108.86 P
ATOM 3 OP1 G A 35 -18.938 51.519 -8.009 1.00108.74 O
ATOM 4 OP2 G A 35 -19.371 52.258 -5.585 1.00108.15 O
ATOM 5 O5' G A 35 -17.391 53.065 -6.828 1.00107.94 O
ATOM 6 C5' G A 35 -16.609 53.306 -7.988 1.00107.37 C
ATOM 7 C4' G A 35 -15.221 53.736 -7.595 1.00106.93 C
ATOM 8 O4' G A 35 -15.303 54.980 -6.853 1.00106.50 O
ATOM 9 C3' G A 35 -14.462 52.809 -6.658 1.00107.26 C
ATOM 10 O3' G A 35 -13.846 51.708 -7.310 1.00107.96 O
ATOM 11 C2' G A 35 -13.444 53.749 -6.028 1.00106.48 C
ATOM 12 O2' G A 35 -12.321 53.982 -6.853 1.00105.34 O
ATOM 13 C1' G A 35 -14.261 55.031 -5.894 1.00105.93 C
ATOM 14 N9 G A 35 -14.833 55.121 -4.553 1.00105.24 N
ATOM 15 C8 G A 35 -16.120 54.861 -4.146 1.00104.47 C
ATOM 16 N7 G A 35 -16.284 55.004 -2.853 1.00104.74 N
ATOM 17 C5 G A 35 -15.030 55.391 -2.386 1.00105.27 C
ATOM 18 C6 G A 35 -14.552 55.706 -1.048 1.00105.70 C
ATOM 19 O6 G A 35 -15.159 55.708 0.036 1.00107.42 O
ATOM 20 N1 G A 35 -13.208 56.044 -1.059 1.00105.21 N
ATOM 21 C2 G A 35 -12.419 56.083 -2.170 1.00104.70 C
ATOM 22 N2 G A 35 -11.160 56.433 -1.963 1.00105.27 N
ATOM 23 N3 G A 35 -12.830 55.801 -3.391 1.00104.33 N
ATOM 24 C4 G A 35 -14.131 55.468 -3.426 1.00104.93 C
ATOM 25 P C A 36 -13.325 50.470 -6.428 1.00107.52 P
ATOM 26 OP1 C A 36 -12.912 49.379 -7.345 1.00108.61 O
ATOM 27 OP2 C A 36 -14.343 50.205 -5.382 1.00106.47 O
ATOM 28 O5' C A 36 -12.022 51.042 -5.711 1.00106.99 O
TER
ATOM 1 O3' G B 35 -13.846 51.708 -7.310 1.00107.96 O
ATOM 2 P C B 36 -13.325 50.470 -6.428 1.00107.52 P
ATOM 3 OP1 C B 36 -12.912 49.379 -7.345 1.00108.61 O
ATOM 4 OP2 C B 36 -14.343 50.205 -5.382 1.00106.47 O
ATOM 5 O5' C B 36 -12.022 51.042 -5.711 1.00106.99 O
ATOM 6 C5' C B 36 -10.911 51.499 -6.474 1.00105.46 C
ATOM 7 C4' C B 36 -9.775 51.897 -5.561 1.00104.96 C
ATOM 8 O4' C B 36 -10.178 53.028 -4.744 1.00104.93 O
ATOM 9 C3' C B 36 -9.348 50.848 -4.551 1.00104.61 C
ATOM 10 O3' C B 36 -8.453 49.896 -5.098 1.00104.51 O
ATOM 11 C2' C B 36 -8.704 51.680 -3.451 1.00104.18 C
ATOM 12 O2' C B 36 -7.360 52.022 -3.729 1.00104.33 O
ATOM 13 C1' C B 36 -9.567 52.940 -3.468 1.00103.63 C
ATOM 14 N1 C B 36 -10.615 52.928 -2.429 1.00102.47 N
ATOM 15 C2 C B 36 -10.222 53.116 -1.103 1.00101.76 C
ATOM 16 O2 C B 36 -9.025 53.276 -0.859 1.00101.55 O
ATOM 17 N3 C B 36 -11.152 53.116 -0.125 1.00100.84 N
ATOM 18 C4 C B 36 -12.433 52.938 -0.425 1.00100.30 C
ATOM 19 N4 C B 36 -13.302 52.950 0.584 1.00 98.99 N
ATOM 20 C5 C B 36 -12.874 52.740 -1.772 1.00100.79 C
ATOM 21 C6 C B 36 -11.936 52.743 -2.737 1.00101.88 C
ATOM 22 P U B 37 -8.424 48.414 -4.483 1.00105.59 P
ATOM 23 OP1 U B 37 -7.379 47.620 -5.185 1.00105.12 O
ATOM 24 OP2 U B 37 -9.833 47.931 -4.465 1.00105.33 O
ATOM 25 O5' U B 37 -7.943 48.641 -2.979 1.00104.98 O
TER
Atoms:
OP1: (-18.938,51.519,-8.009)
OP2: (-19.371,52.258,-5.585)
C3': (-14.462,52.809,-6.658)
C1': (-14.261,55.031,-5.894)
C5': (-16.609,53.306,-7.988)
O6: (-15.159,55.708,0.036)
O4': (-15.303,54.980,-6.853)
C8: (-16.120,54.861,-4.146)
C2: (-12.419,56.083,-2.170)
C6: (-14.552,55.706,-1.048)
C5: (-15.030,55.391,-2.386)
C4: (-14.131,55.468,-3.426)
P: (-18.897,52.571,-6.958)
C4': (-15.221,53.736,-7.595)
C2': (-13.444,53.749,-6.028)
O2': (-12.321,53.982,-6.853)
N1: (-13.208,56.044,-1.059)
N2: (-11.160,56.433,-1.963)
N3: (-12.830,55.801,-3.391)
N7: (-16.284,55.004,-2.853)
N9: (-14.833,55.121,-4.553)
O5': (-17.391,53.065,-6.828)
O3': (-13.846,51.708,-7.310)
OP2: (-19.371,52.258,-5.585)
C3': (-14.462,52.809,-6.658)
C1': (-14.261,55.031,-5.894)
C5': (-16.609,53.306,-7.988)
O6: (-15.159,55.708,0.036)
O4': (-15.303,54.980,-6.853)
C8: (-16.120,54.861,-4.146)
C2: (-12.419,56.083,-2.170)
C6: (-14.552,55.706,-1.048)
C5: (-15.030,55.391,-2.386)
C4: (-14.131,55.468,-3.426)
P: (-18.897,52.571,-6.958)
C4': (-15.221,53.736,-7.595)
C2': (-13.444,53.749,-6.028)
O2': (-12.321,53.982,-6.853)
N1: (-13.208,56.044,-1.059)
N2: (-11.160,56.433,-1.963)
N3: (-12.830,55.801,-3.391)
N7: (-16.284,55.004,-2.853)
N9: (-14.833,55.121,-4.553)
O5': (-17.391,53.065,-6.828)
O3': (-13.846,51.708,-7.310)
C2: (-10.222,53.116,-1.103)
OP1: (-12.912,49.379,-7.345)
OP2: (-14.343,50.205,-5.382)
C4: (-12.433,52.938,-0.425)
O5': (-12.022,51.042,-5.711)
C3': (-9.348,50.848,-4.551)
C1': (-9.567,52.940,-3.468)
O4': (-10.178,53.028,-4.744)
C5': (-10.911,51.499,-6.474)
P: (-13.325,50.470,-6.428)
O2: (-9.025,53.276,-0.859)
C4': (-9.775,51.897,-5.561)
C2': (-8.704,51.680,-3.451)
O2': (-7.360,52.022,-3.729)
N1: (-10.615,52.928,-2.429)
N3: (-11.152,53.116,-0.125)
N4: (-13.302,52.950,0.584)
C6: (-11.936,52.743,-2.737)
C5: (-12.874,52.740,-1.772)
O3': (-8.453,49.896,-5.098)
OP1: (-12.912,49.379,-7.345)
OP2: (-14.343,50.205,-5.382)
C4: (-12.433,52.938,-0.425)
O5': (-12.022,51.042,-5.711)
C3': (-9.348,50.848,-4.551)
C1': (-9.567,52.940,-3.468)
O4': (-10.178,53.028,-4.744)
C5': (-10.911,51.499,-6.474)
P: (-13.325,50.470,-6.428)
O2: (-9.025,53.276,-0.859)
C4': (-9.775,51.897,-5.561)
C2': (-8.704,51.680,-3.451)
O2': (-7.360,52.022,-3.729)
N1: (-10.615,52.928,-2.429)
N3: (-11.152,53.116,-0.125)
N4: (-13.302,52.950,0.584)
C6: (-11.936,52.743,-2.737)
C5: (-12.874,52.740,-1.772)
O3': (-8.453,49.896,-5.098)
Image (generated by PyMOL):