Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A1504:A1505
Extra
PDB:
ATOM 1 O3' G A1503 3.008 -1.443 26.399 1.00 51.53 O
ATOM 2 P G A1504 2.912 -2.938 25.822 1.00 38.86 P
ATOM 3 OP1 G A1504 3.995 -3.728 26.470 1.00 38.86 O
ATOM 4 OP2 G A1504 2.896 -2.823 24.336 1.00 38.86 O
ATOM 5 O5' G A1504 1.492 -3.448 26.358 1.00 38.86 O
ATOM 6 C5' G A1504 1.352 -3.940 27.686 1.00 38.86 C
ATOM 7 C4' G A1504 -0.085 -4.274 28.024 1.00 38.86 C
ATOM 8 O4' G A1504 -0.979 -3.246 27.515 1.00 38.86 O
ATOM 9 C3' G A1504 -0.641 -5.555 27.430 1.00 38.86 C
ATOM 10 O3' G A1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 11 C2' G A1504 -2.137 -5.307 27.499 1.00 38.86 C
ATOM 12 O2' G A1504 -2.613 -5.464 28.829 1.00 38.86 O
ATOM 13 C1' G A1504 -2.202 -3.831 27.124 1.00 38.86 C
ATOM 14 N9 G A1504 -2.362 -3.646 25.672 1.00 38.31 N
ATOM 15 C8 G A1504 -1.400 -3.283 24.766 1.00 38.31 C
ATOM 16 N7 G A1504 -1.851 -3.206 23.538 1.00 38.31 N
ATOM 17 C5 G A1504 -3.193 -3.546 23.627 1.00 38.31 C
ATOM 18 C6 G A1504 -4.201 -3.642 22.628 1.00 38.31 C
ATOM 19 O6 G A1504 -4.102 -3.427 21.414 1.00 38.31 O
ATOM 20 N1 G A1504 -5.424 -4.023 23.170 1.00 38.31 N
ATOM 21 C2 G A1504 -5.639 -4.275 24.503 1.00 38.31 C
ATOM 22 N2 G A1504 -6.871 -4.628 24.887 1.00 38.31 N
ATOM 23 N3 G A1504 -4.712 -4.192 25.435 1.00 38.31 N
ATOM 24 C4 G A1504 -3.517 -3.820 24.940 1.00 38.31 C
ATOM 25 P C A1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 26 OP1 C A1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 27 OP2 C A1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 28 O5' C A1505 -1.986 -8.315 27.304 1.00 26.39 O
TER
ATOM 1 O3' G B1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 2 P C B1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 3 OP1 C B1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 4 OP2 C B1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 5 O5' C B1505 -1.986 -8.315 27.304 1.00 26.39 O
ATOM 6 C5' C B1505 -2.752 -9.022 28.269 1.00 26.39 C
ATOM 7 C4' C B1505 -4.180 -9.187 27.818 1.00 26.39 C
ATOM 8 O4' C B1505 -4.620 -7.983 27.146 1.00 26.39 O
ATOM 9 C3' C B1505 -4.437 -10.260 26.784 1.00 26.39 C
ATOM 10 O3' C B1505 -4.454 -11.560 27.315 1.00 26.39 O
ATOM 11 C2' C B1505 -5.757 -9.818 26.188 1.00 26.39 C
ATOM 12 O2' C B1505 -6.832 -10.065 27.085 1.00 26.39 O
ATOM 13 C1' C B1505 -5.524 -8.320 26.116 1.00 26.39 C
ATOM 14 N1 C B1505 -4.931 -7.921 24.851 1.00 25.92 N
ATOM 15 C2 C B1505 -5.809 -7.704 23.819 1.00 25.92 C
ATOM 16 O2 C B1505 -7.008 -7.916 24.087 1.00 25.92 O
ATOM 17 N3 C B1505 -5.325 -7.296 22.609 1.00 25.92 N
ATOM 18 C4 C B1505 -4.014 -7.115 22.444 1.00 25.92 C
ATOM 19 N4 C B1505 -3.552 -6.725 21.258 1.00 25.92 N
ATOM 20 C5 C B1505 -3.107 -7.331 23.509 1.00 25.92 C
ATOM 21 C6 C B1505 -3.602 -7.726 24.690 1.00 25.92 C
ATOM 22 P U B1506 -3.607 -12.701 26.579 1.00 26.53 P
ATOM 23 OP1 U B1506 -3.459 -13.831 27.545 1.00 26.53 O
ATOM 24 OP2 U B1506 -2.388 -12.052 26.028 1.00 26.53 O
ATOM 25 O5' U B1506 -4.561 -13.126 25.382 1.00 26.53 O
TER
ATOM 2 P G A1504 2.912 -2.938 25.822 1.00 38.86 P
ATOM 3 OP1 G A1504 3.995 -3.728 26.470 1.00 38.86 O
ATOM 4 OP2 G A1504 2.896 -2.823 24.336 1.00 38.86 O
ATOM 5 O5' G A1504 1.492 -3.448 26.358 1.00 38.86 O
ATOM 6 C5' G A1504 1.352 -3.940 27.686 1.00 38.86 C
ATOM 7 C4' G A1504 -0.085 -4.274 28.024 1.00 38.86 C
ATOM 8 O4' G A1504 -0.979 -3.246 27.515 1.00 38.86 O
ATOM 9 C3' G A1504 -0.641 -5.555 27.430 1.00 38.86 C
ATOM 10 O3' G A1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 11 C2' G A1504 -2.137 -5.307 27.499 1.00 38.86 C
ATOM 12 O2' G A1504 -2.613 -5.464 28.829 1.00 38.86 O
ATOM 13 C1' G A1504 -2.202 -3.831 27.124 1.00 38.86 C
ATOM 14 N9 G A1504 -2.362 -3.646 25.672 1.00 38.31 N
ATOM 15 C8 G A1504 -1.400 -3.283 24.766 1.00 38.31 C
ATOM 16 N7 G A1504 -1.851 -3.206 23.538 1.00 38.31 N
ATOM 17 C5 G A1504 -3.193 -3.546 23.627 1.00 38.31 C
ATOM 18 C6 G A1504 -4.201 -3.642 22.628 1.00 38.31 C
ATOM 19 O6 G A1504 -4.102 -3.427 21.414 1.00 38.31 O
ATOM 20 N1 G A1504 -5.424 -4.023 23.170 1.00 38.31 N
ATOM 21 C2 G A1504 -5.639 -4.275 24.503 1.00 38.31 C
ATOM 22 N2 G A1504 -6.871 -4.628 24.887 1.00 38.31 N
ATOM 23 N3 G A1504 -4.712 -4.192 25.435 1.00 38.31 N
ATOM 24 C4 G A1504 -3.517 -3.820 24.940 1.00 38.31 C
ATOM 25 P C A1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 26 OP1 C A1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 27 OP2 C A1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 28 O5' C A1505 -1.986 -8.315 27.304 1.00 26.39 O
TER
ATOM 1 O3' G B1504 -0.231 -6.714 28.129 1.00 38.86 O
ATOM 2 P C B1505 -0.401 -8.170 27.459 1.00 26.39 P
ATOM 3 OP1 C B1505 0.095 -9.171 28.458 1.00 26.39 O
ATOM 4 OP2 C B1505 0.240 -8.107 26.103 1.00 26.39 O
ATOM 5 O5' C B1505 -1.986 -8.315 27.304 1.00 26.39 O
ATOM 6 C5' C B1505 -2.752 -9.022 28.269 1.00 26.39 C
ATOM 7 C4' C B1505 -4.180 -9.187 27.818 1.00 26.39 C
ATOM 8 O4' C B1505 -4.620 -7.983 27.146 1.00 26.39 O
ATOM 9 C3' C B1505 -4.437 -10.260 26.784 1.00 26.39 C
ATOM 10 O3' C B1505 -4.454 -11.560 27.315 1.00 26.39 O
ATOM 11 C2' C B1505 -5.757 -9.818 26.188 1.00 26.39 C
ATOM 12 O2' C B1505 -6.832 -10.065 27.085 1.00 26.39 O
ATOM 13 C1' C B1505 -5.524 -8.320 26.116 1.00 26.39 C
ATOM 14 N1 C B1505 -4.931 -7.921 24.851 1.00 25.92 N
ATOM 15 C2 C B1505 -5.809 -7.704 23.819 1.00 25.92 C
ATOM 16 O2 C B1505 -7.008 -7.916 24.087 1.00 25.92 O
ATOM 17 N3 C B1505 -5.325 -7.296 22.609 1.00 25.92 N
ATOM 18 C4 C B1505 -4.014 -7.115 22.444 1.00 25.92 C
ATOM 19 N4 C B1505 -3.552 -6.725 21.258 1.00 25.92 N
ATOM 20 C5 C B1505 -3.107 -7.331 23.509 1.00 25.92 C
ATOM 21 C6 C B1505 -3.602 -7.726 24.690 1.00 25.92 C
ATOM 22 P U B1506 -3.607 -12.701 26.579 1.00 26.53 P
ATOM 23 OP1 U B1506 -3.459 -13.831 27.545 1.00 26.53 O
ATOM 24 OP2 U B1506 -2.388 -12.052 26.028 1.00 26.53 O
ATOM 25 O5' U B1506 -4.561 -13.126 25.382 1.00 26.53 O
TER
Atoms:
OP1: (3.995,-3.728,26.470)
OP2: (2.896,-2.823,24.336)
C3': (-0.641,-5.555,27.430)
C1': (-2.202,-3.831,27.124)
C5': (1.352,-3.940,27.686)
O6: (-4.102,-3.427,21.414)
O4': (-0.979,-3.246,27.515)
C8: (-1.400,-3.283,24.766)
C2: (-5.639,-4.275,24.503)
C6: (-4.201,-3.642,22.628)
C5: (-3.193,-3.546,23.627)
C4: (-3.517,-3.820,24.940)
P: (2.912,-2.938,25.822)
C4': (-0.085,-4.274,28.024)
C2': (-2.137,-5.307,27.499)
O2': (-2.613,-5.464,28.829)
N1: (-5.424,-4.023,23.170)
N2: (-6.871,-4.628,24.887)
N3: (-4.712,-4.192,25.435)
N7: (-1.851,-3.206,23.538)
N9: (-2.362,-3.646,25.672)
O5': (1.492,-3.448,26.358)
O3': (-0.231,-6.714,28.129)
OP2: (2.896,-2.823,24.336)
C3': (-0.641,-5.555,27.430)
C1': (-2.202,-3.831,27.124)
C5': (1.352,-3.940,27.686)
O6: (-4.102,-3.427,21.414)
O4': (-0.979,-3.246,27.515)
C8: (-1.400,-3.283,24.766)
C2: (-5.639,-4.275,24.503)
C6: (-4.201,-3.642,22.628)
C5: (-3.193,-3.546,23.627)
C4: (-3.517,-3.820,24.940)
P: (2.912,-2.938,25.822)
C4': (-0.085,-4.274,28.024)
C2': (-2.137,-5.307,27.499)
O2': (-2.613,-5.464,28.829)
N1: (-5.424,-4.023,23.170)
N2: (-6.871,-4.628,24.887)
N3: (-4.712,-4.192,25.435)
N7: (-1.851,-3.206,23.538)
N9: (-2.362,-3.646,25.672)
O5': (1.492,-3.448,26.358)
O3': (-0.231,-6.714,28.129)
C2: (-5.809,-7.704,23.819)
OP1: (0.095,-9.171,28.458)
OP2: (0.240,-8.107,26.103)
C4: (-4.014,-7.115,22.444)
O5': (-1.986,-8.315,27.304)
C3': (-4.437,-10.260,26.784)
C1': (-5.524,-8.320,26.116)
O4': (-4.620,-7.983,27.146)
C5': (-2.752,-9.022,28.269)
P: (-0.401,-8.170,27.459)
O2: (-7.008,-7.916,24.087)
C4': (-4.180,-9.187,27.818)
C2': (-5.757,-9.818,26.188)
O2': (-6.832,-10.065,27.085)
N1: (-4.931,-7.921,24.851)
N3: (-5.325,-7.296,22.609)
N4: (-3.552,-6.725,21.258)
C6: (-3.602,-7.726,24.690)
C5: (-3.107,-7.331,23.509)
O3': (-4.454,-11.560,27.315)
OP1: (0.095,-9.171,28.458)
OP2: (0.240,-8.107,26.103)
C4: (-4.014,-7.115,22.444)
O5': (-1.986,-8.315,27.304)
C3': (-4.437,-10.260,26.784)
C1': (-5.524,-8.320,26.116)
O4': (-4.620,-7.983,27.146)
C5': (-2.752,-9.022,28.269)
P: (-0.401,-8.170,27.459)
O2: (-7.008,-7.916,24.087)
C4': (-4.180,-9.187,27.818)
C2': (-5.757,-9.818,26.188)
O2': (-6.832,-10.065,27.085)
N1: (-4.931,-7.921,24.851)
N3: (-5.325,-7.296,22.609)
N4: (-3.552,-6.725,21.258)
C6: (-3.602,-7.726,24.690)
C5: (-3.107,-7.331,23.509)
O3': (-4.454,-11.560,27.315)
Image (generated by PyMOL):