Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1U8D:A60:A35
Extra
PDB:
ATOM 1 O3' C A 59 9.611 10.304 17.650 1.00 19.83 O
ATOM 2 P U A 60 8.046 10.090 17.379 1.00 20.97 P
ATOM 3 OP1 U A 60 7.326 10.728 18.515 1.00 20.97 O
ATOM 4 OP2 U A 60 7.770 8.678 17.051 1.00 19.40 O
ATOM 5 O5' U A 60 7.759 10.948 16.067 1.00 19.78 O
ATOM 6 C5' U A 60 7.940 12.353 16.067 1.00 19.76 C
ATOM 7 C4' U A 60 7.692 12.920 14.689 1.00 19.28 C
ATOM 8 O4' U A 60 8.781 12.515 13.804 1.00 19.26 O
ATOM 9 C3' U A 60 6.437 12.422 13.980 1.00 19.85 C
ATOM 10 O3' U A 60 5.251 13.115 14.372 1.00 21.73 O
ATOM 11 C2' U A 60 6.784 12.675 12.521 1.00 18.07 C
ATOM 12 O2' U A 60 6.648 14.044 12.198 1.00 18.55 O
ATOM 13 C1' U A 60 8.269 12.294 12.503 1.00 18.72 C
ATOM 14 N1 U A 60 8.444 10.876 12.155 1.00 16.03 N
ATOM 15 C2 U A 60 8.528 10.591 10.821 1.00 14.55 C
ATOM 16 O2 U A 60 8.474 11.463 9.960 1.00 16.34 O
ATOM 17 N3 U A 60 8.689 9.269 10.515 1.00 14.24 N
ATOM 18 C4 U A 60 8.798 8.233 11.389 1.00 14.08 C
ATOM 19 O4 U A 60 9.094 7.130 10.954 1.00 15.54 O
ATOM 20 C5 U A 60 8.693 8.599 12.769 1.00 14.83 C
ATOM 21 C6 U A 60 8.516 9.890 13.096 1.00 15.06 C
ATOM 22 P A A 61 3.836 12.353 14.321 1.00 22.14 P
ATOM 23 OP1 A A 61 2.880 13.223 15.033 1.00 23.41 O
ATOM 24 OP2 A A 61 4.009 10.938 14.753 1.00 21.70 O
ATOM 25 O5' A A 61 3.415 12.341 12.788 1.00 21.20 O
TER
ATOM 1 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 2 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 3 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 4 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 5 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
ATOM 6 C5' C B 35 4.862 20.228 6.238 1.00 24.64 C
ATOM 7 C4' C B 35 4.500 19.987 7.664 1.00 23.18 C
ATOM 8 O4' C B 35 3.946 18.653 7.796 1.00 22.19 O
ATOM 9 C3' C B 35 5.714 19.971 8.569 1.00 23.50 C
ATOM 10 O3' C B 35 6.031 21.297 8.951 1.00 23.96 O
ATOM 11 C2' C B 35 5.211 19.146 9.739 1.00 22.22 C
ATOM 12 O2' C B 35 4.390 19.925 10.581 1.00 23.29 O
ATOM 13 C1' C B 35 4.379 18.081 9.020 1.00 20.79 C
ATOM 14 N1 C B 35 5.148 16.857 8.718 1.00 18.62 N
ATOM 15 C2 C B 35 5.579 16.061 9.782 1.00 18.06 C
ATOM 16 O2 C B 35 5.294 16.403 10.944 1.00 18.10 O
ATOM 17 N3 C B 35 6.286 14.924 9.529 1.00 18.43 N
ATOM 18 C4 C B 35 6.541 14.559 8.278 1.00 16.95 C
ATOM 19 N4 C B 35 7.187 13.390 8.096 1.00 16.78 N
ATOM 20 C5 C B 35 6.127 15.362 7.156 1.00 18.20 C
ATOM 21 C6 C B 35 5.435 16.496 7.425 1.00 18.70 C
ATOM 22 P U B 36 7.545 21.802 8.901 1.00 26.70 P
ATOM 23 OP1 U B 36 7.531 23.156 9.484 1.00 26.93 O
ATOM 24 OP2 U B 36 8.082 21.612 7.532 1.00 25.00 O
ATOM 25 O5' U B 36 8.299 20.823 9.912 1.00 25.55 O
TER
ATOM 2 P U A 60 8.046 10.090 17.379 1.00 20.97 P
ATOM 3 OP1 U A 60 7.326 10.728 18.515 1.00 20.97 O
ATOM 4 OP2 U A 60 7.770 8.678 17.051 1.00 19.40 O
ATOM 5 O5' U A 60 7.759 10.948 16.067 1.00 19.78 O
ATOM 6 C5' U A 60 7.940 12.353 16.067 1.00 19.76 C
ATOM 7 C4' U A 60 7.692 12.920 14.689 1.00 19.28 C
ATOM 8 O4' U A 60 8.781 12.515 13.804 1.00 19.26 O
ATOM 9 C3' U A 60 6.437 12.422 13.980 1.00 19.85 C
ATOM 10 O3' U A 60 5.251 13.115 14.372 1.00 21.73 O
ATOM 11 C2' U A 60 6.784 12.675 12.521 1.00 18.07 C
ATOM 12 O2' U A 60 6.648 14.044 12.198 1.00 18.55 O
ATOM 13 C1' U A 60 8.269 12.294 12.503 1.00 18.72 C
ATOM 14 N1 U A 60 8.444 10.876 12.155 1.00 16.03 N
ATOM 15 C2 U A 60 8.528 10.591 10.821 1.00 14.55 C
ATOM 16 O2 U A 60 8.474 11.463 9.960 1.00 16.34 O
ATOM 17 N3 U A 60 8.689 9.269 10.515 1.00 14.24 N
ATOM 18 C4 U A 60 8.798 8.233 11.389 1.00 14.08 C
ATOM 19 O4 U A 60 9.094 7.130 10.954 1.00 15.54 O
ATOM 20 C5 U A 60 8.693 8.599 12.769 1.00 14.83 C
ATOM 21 C6 U A 60 8.516 9.890 13.096 1.00 15.06 C
ATOM 22 P A A 61 3.836 12.353 14.321 1.00 22.14 P
ATOM 23 OP1 A A 61 2.880 13.223 15.033 1.00 23.41 O
ATOM 24 OP2 A A 61 4.009 10.938 14.753 1.00 21.70 O
ATOM 25 O5' A A 61 3.415 12.341 12.788 1.00 21.20 O
TER
ATOM 1 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 2 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 3 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 4 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 5 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
ATOM 6 C5' C B 35 4.862 20.228 6.238 1.00 24.64 C
ATOM 7 C4' C B 35 4.500 19.987 7.664 1.00 23.18 C
ATOM 8 O4' C B 35 3.946 18.653 7.796 1.00 22.19 O
ATOM 9 C3' C B 35 5.714 19.971 8.569 1.00 23.50 C
ATOM 10 O3' C B 35 6.031 21.297 8.951 1.00 23.96 O
ATOM 11 C2' C B 35 5.211 19.146 9.739 1.00 22.22 C
ATOM 12 O2' C B 35 4.390 19.925 10.581 1.00 23.29 O
ATOM 13 C1' C B 35 4.379 18.081 9.020 1.00 20.79 C
ATOM 14 N1 C B 35 5.148 16.857 8.718 1.00 18.62 N
ATOM 15 C2 C B 35 5.579 16.061 9.782 1.00 18.06 C
ATOM 16 O2 C B 35 5.294 16.403 10.944 1.00 18.10 O
ATOM 17 N3 C B 35 6.286 14.924 9.529 1.00 18.43 N
ATOM 18 C4 C B 35 6.541 14.559 8.278 1.00 16.95 C
ATOM 19 N4 C B 35 7.187 13.390 8.096 1.00 16.78 N
ATOM 20 C5 C B 35 6.127 15.362 7.156 1.00 18.20 C
ATOM 21 C6 C B 35 5.435 16.496 7.425 1.00 18.70 C
ATOM 22 P U B 36 7.545 21.802 8.901 1.00 26.70 P
ATOM 23 OP1 U B 36 7.531 23.156 9.484 1.00 26.93 O
ATOM 24 OP2 U B 36 8.082 21.612 7.532 1.00 25.00 O
ATOM 25 O5' U B 36 8.299 20.823 9.912 1.00 25.55 O
TER
Atoms:
C4: (8.798,8.233,11.389)
N3: (8.689,9.269,10.515)
OP1: (7.326,10.728,18.515)
OP2: (7.770,8.678,17.051)
C2: (8.528,10.591,10.821)
C1': (8.269,12.294,12.503)
C3': (6.437,12.422,13.980)
O5': (7.759,10.948,16.067)
O4': (8.781,12.515,13.804)
C5': (7.940,12.353,16.067)
P: (8.046,10.090,17.379)
C4': (7.692,12.920,14.689)
C2': (6.784,12.675,12.521)
O2': (6.648,14.044,12.198)
N1: (8.444,10.876,12.155)
O4: (9.094,7.130,10.954)
O2: (8.474,11.463,9.960)
C6: (8.516,9.890,13.096)
C5: (8.693,8.599,12.769)
O3': (5.251,13.115,14.372)
N3: (8.689,9.269,10.515)
OP1: (7.326,10.728,18.515)
OP2: (7.770,8.678,17.051)
C2: (8.528,10.591,10.821)
C1': (8.269,12.294,12.503)
C3': (6.437,12.422,13.980)
O5': (7.759,10.948,16.067)
O4': (8.781,12.515,13.804)
C5': (7.940,12.353,16.067)
P: (8.046,10.090,17.379)
C4': (7.692,12.920,14.689)
C2': (6.784,12.675,12.521)
O2': (6.648,14.044,12.198)
N1: (8.444,10.876,12.155)
O4: (9.094,7.130,10.954)
O2: (8.474,11.463,9.960)
C6: (8.516,9.890,13.096)
C5: (8.693,8.599,12.769)
O3': (5.251,13.115,14.372)
C2: (5.579,16.061,9.782)
OP1: (5.898,20.166,3.536)
OP2: (7.459,18.286,4.288)
C4: (6.541,14.559,8.278)
O5': (5.932,19.376,5.884)
C3': (5.714,19.971,8.569)
C1': (4.379,18.081,9.020)
O4': (3.946,18.653,7.796)
C5': (4.862,20.228,6.238)
P: (6.149,18.965,4.371)
O2: (5.294,16.403,10.944)
C4': (4.500,19.987,7.664)
C2': (5.211,19.146,9.739)
O2': (4.390,19.925,10.581)
N1: (5.148,16.857,8.718)
N3: (6.286,14.924,9.529)
N4: (7.187,13.390,8.096)
C6: (5.435,16.496,7.425)
C5: (6.127,15.362,7.156)
O3': (6.031,21.297,8.951)
OP1: (5.898,20.166,3.536)
OP2: (7.459,18.286,4.288)
C4: (6.541,14.559,8.278)
O5': (5.932,19.376,5.884)
C3': (5.714,19.971,8.569)
C1': (4.379,18.081,9.020)
O4': (3.946,18.653,7.796)
C5': (4.862,20.228,6.238)
P: (6.149,18.965,4.371)
O2: (5.294,16.403,10.944)
C4': (4.500,19.987,7.664)
C2': (5.211,19.146,9.739)
O2': (4.390,19.925,10.581)
N1: (5.148,16.857,8.718)
N3: (6.286,14.924,9.529)
N4: (7.187,13.390,8.096)
C6: (5.435,16.496,7.425)
C5: (6.127,15.362,7.156)
O3': (6.031,21.297,8.951)
Image (generated by PyMOL):