Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12387:12386
Extra
PDB:
ATOM 1 O3' U A2386 28.612 -32.122 36.946 1.00 37.75 O
ATOM 2 P A A2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 3 OP1 A A2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 4 OP2 A A2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 5 O5' A A2387 30.677 -33.510 36.642 1.00 38.10 O
ATOM 6 C5' A A2387 31.900 -33.863 36.051 1.00 38.20 C
ATOM 7 C4' A A2387 32.521 -34.997 36.777 1.00 38.21 C
ATOM 8 O4' A A2387 32.810 -34.588 38.137 1.00 37.86 O
ATOM 9 C3' A A2387 31.655 -36.243 36.893 1.00 38.46 C
ATOM 10 O3' A A2387 32.451 -37.390 36.639 1.00 38.67 O
ATOM 11 C2' A A2387 31.198 -36.242 38.353 1.00 38.20 C
ATOM 12 O2' A A2387 30.929 -37.527 38.870 1.00 38.36 O
ATOM 13 C1' A A2387 32.403 -35.611 39.016 1.00 37.90 C
ATOM 14 N9 A A2387 32.197 -35.016 40.326 1.00 37.57 N
ATOM 15 C8 A A2387 31.947 -33.699 40.581 1.00 37.32 C
ATOM 16 N7 A A2387 31.942 -33.343 41.849 1.00 37.05 N
ATOM 17 C5 A A2387 32.248 -34.531 42.450 1.00 37.13 C
ATOM 18 C6 A A2387 32.418 -34.811 43.793 1.00 36.95 C
ATOM 19 N6 A A2387 32.290 -33.874 44.755 1.00 36.66 N
ATOM 20 N1 A A2387 32.732 -36.089 44.097 1.00 37.11 N
ATOM 21 C2 A A2387 32.881 -36.965 43.101 1.00 37.41 C
ATOM 22 N3 A A2387 32.787 -36.795 41.791 1.00 37.60 N
ATOM 23 C4 A A2387 32.454 -35.543 41.538 1.00 37.44 C
ATOM 24 P A A2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 25 OP1 A A2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 26 OP2 A A2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 27 O5' A A2388 33.599 -36.633 34.560 1.00 40.72 O
TER
ATOM 1 O3' U B2385 26.181 -37.801 36.741 1.00 35.60 O
ATOM 2 P U B2386 27.736 -37.387 36.687 1.00 38.76 P
ATOM 3 OP1 U B2386 28.144 -37.279 35.277 1.00 39.00 O
ATOM 4 OP2 U B2386 28.463 -38.309 37.533 1.00 38.70 O
ATOM 5 O5' U B2386 27.727 -35.952 37.353 1.00 38.36 O
ATOM 6 C5' U B2386 27.040 -34.876 36.753 1.00 38.36 C
ATOM 7 C4' U B2386 26.903 -33.719 37.714 1.00 37.99 C
ATOM 8 O4' U B2386 26.499 -34.194 39.037 1.00 37.84 O
ATOM 9 C3' U B2386 28.165 -32.956 38.020 1.00 37.70 C
ATOM 10 O3' U B2386 28.612 -32.122 36.946 1.00 37.75 O
ATOM 11 C2' U B2386 27.774 -32.212 39.300 1.00 37.38 C
ATOM 12 O2' U B2386 26.908 -31.136 38.998 1.00 37.34 O
ATOM 13 C1' U B2386 26.944 -33.267 40.020 1.00 37.48 C
ATOM 14 N1 U B2386 27.691 -33.997 41.096 1.00 37.34 N
ATOM 15 C2 U B2386 27.777 -33.391 42.348 1.00 37.03 C
ATOM 16 O2 U B2386 27.346 -32.285 42.489 1.00 36.87 O
ATOM 17 N3 U B2386 28.409 -34.031 43.392 1.00 36.91 N
ATOM 18 C4 U B2386 28.917 -35.312 43.226 1.00 37.11 C
ATOM 19 O4 U B2386 29.480 -35.877 44.166 1.00 37.03 O
ATOM 20 C5 U B2386 28.763 -35.897 41.913 1.00 37.44 C
ATOM 21 C6 U B2386 28.181 -35.261 40.909 1.00 37.55 C
ATOM 22 P A B2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 23 OP1 A B2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 24 OP2 A B2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 25 O5' A B2387 30.677 -33.510 36.642 1.00 38.10 O
TER
ATOM 2 P A A2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 3 OP1 A A2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 4 OP2 A A2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 5 O5' A A2387 30.677 -33.510 36.642 1.00 38.10 O
ATOM 6 C5' A A2387 31.900 -33.863 36.051 1.00 38.20 C
ATOM 7 C4' A A2387 32.521 -34.997 36.777 1.00 38.21 C
ATOM 8 O4' A A2387 32.810 -34.588 38.137 1.00 37.86 O
ATOM 9 C3' A A2387 31.655 -36.243 36.893 1.00 38.46 C
ATOM 10 O3' A A2387 32.451 -37.390 36.639 1.00 38.67 O
ATOM 11 C2' A A2387 31.198 -36.242 38.353 1.00 38.20 C
ATOM 12 O2' A A2387 30.929 -37.527 38.870 1.00 38.36 O
ATOM 13 C1' A A2387 32.403 -35.611 39.016 1.00 37.90 C
ATOM 14 N9 A A2387 32.197 -35.016 40.326 1.00 37.57 N
ATOM 15 C8 A A2387 31.947 -33.699 40.581 1.00 37.32 C
ATOM 16 N7 A A2387 31.942 -33.343 41.849 1.00 37.05 N
ATOM 17 C5 A A2387 32.248 -34.531 42.450 1.00 37.13 C
ATOM 18 C6 A A2387 32.418 -34.811 43.793 1.00 36.95 C
ATOM 19 N6 A A2387 32.290 -33.874 44.755 1.00 36.66 N
ATOM 20 N1 A A2387 32.732 -36.089 44.097 1.00 37.11 N
ATOM 21 C2 A A2387 32.881 -36.965 43.101 1.00 37.41 C
ATOM 22 N3 A A2387 32.787 -36.795 41.791 1.00 37.60 N
ATOM 23 C4 A A2387 32.454 -35.543 41.538 1.00 37.44 C
ATOM 24 P A A2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 25 OP1 A A2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 26 OP2 A A2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 27 O5' A A2388 33.599 -36.633 34.560 1.00 40.72 O
TER
ATOM 1 O3' U B2385 26.181 -37.801 36.741 1.00 35.60 O
ATOM 2 P U B2386 27.736 -37.387 36.687 1.00 38.76 P
ATOM 3 OP1 U B2386 28.144 -37.279 35.277 1.00 39.00 O
ATOM 4 OP2 U B2386 28.463 -38.309 37.533 1.00 38.70 O
ATOM 5 O5' U B2386 27.727 -35.952 37.353 1.00 38.36 O
ATOM 6 C5' U B2386 27.040 -34.876 36.753 1.00 38.36 C
ATOM 7 C4' U B2386 26.903 -33.719 37.714 1.00 37.99 C
ATOM 8 O4' U B2386 26.499 -34.194 39.037 1.00 37.84 O
ATOM 9 C3' U B2386 28.165 -32.956 38.020 1.00 37.70 C
ATOM 10 O3' U B2386 28.612 -32.122 36.946 1.00 37.75 O
ATOM 11 C2' U B2386 27.774 -32.212 39.300 1.00 37.38 C
ATOM 12 O2' U B2386 26.908 -31.136 38.998 1.00 37.34 O
ATOM 13 C1' U B2386 26.944 -33.267 40.020 1.00 37.48 C
ATOM 14 N1 U B2386 27.691 -33.997 41.096 1.00 37.34 N
ATOM 15 C2 U B2386 27.777 -33.391 42.348 1.00 37.03 C
ATOM 16 O2 U B2386 27.346 -32.285 42.489 1.00 36.87 O
ATOM 17 N3 U B2386 28.409 -34.031 43.392 1.00 36.91 N
ATOM 18 C4 U B2386 28.917 -35.312 43.226 1.00 37.11 C
ATOM 19 O4 U B2386 29.480 -35.877 44.166 1.00 37.03 O
ATOM 20 C5 U B2386 28.763 -35.897 41.913 1.00 37.44 C
ATOM 21 C6 U B2386 28.181 -35.261 40.909 1.00 37.55 C
ATOM 22 P A B2387 30.204 -32.000 36.646 1.00 37.90 P
ATOM 23 OP1 A B2387 30.788 -31.269 37.833 1.00 37.52 O
ATOM 24 OP2 A B2387 30.396 -31.428 35.265 1.00 38.08 O
ATOM 25 O5' A B2387 30.677 -33.510 36.642 1.00 38.10 O
TER
Atoms:
OP1: (30.788,-31.269,37.833)
OP2: (30.396,-31.428,35.265)
C3': (31.655,-36.243,36.893)
C1': (32.403,-35.611,39.016)
C5': (31.900,-33.863,36.051)
O4': (32.810,-34.588,38.137)
C8: (31.947,-33.699,40.581)
O2': (30.929,-37.527,38.870)
C6: (32.418,-34.811,43.793)
C5: (32.248,-34.531,42.450)
C4: (32.454,-35.543,41.538)
P: (30.204,-32.000,36.646)
C4': (32.521,-34.997,36.777)
C2': (31.198,-36.242,38.353)
C2: (32.881,-36.965,43.101)
N1: (32.732,-36.089,44.097)
N3: (32.787,-36.795,41.791)
N6: (32.290,-33.874,44.755)
N7: (31.942,-33.343,41.849)
N9: (32.197,-35.016,40.326)
O5': (30.677,-33.510,36.642)
O3': (32.451,-37.390,36.639)
OP2: (30.396,-31.428,35.265)
C3': (31.655,-36.243,36.893)
C1': (32.403,-35.611,39.016)
C5': (31.900,-33.863,36.051)
O4': (32.810,-34.588,38.137)
C8: (31.947,-33.699,40.581)
O2': (30.929,-37.527,38.870)
C6: (32.418,-34.811,43.793)
C5: (32.248,-34.531,42.450)
C4: (32.454,-35.543,41.538)
P: (30.204,-32.000,36.646)
C4': (32.521,-34.997,36.777)
C2': (31.198,-36.242,38.353)
C2: (32.881,-36.965,43.101)
N1: (32.732,-36.089,44.097)
N3: (32.787,-36.795,41.791)
N6: (32.290,-33.874,44.755)
N7: (31.942,-33.343,41.849)
N9: (32.197,-35.016,40.326)
O5': (30.677,-33.510,36.642)
O3': (32.451,-37.390,36.639)
C4: (28.917,-35.312,43.226)
N3: (28.409,-34.031,43.392)
OP1: (28.144,-37.279,35.277)
OP2: (28.463,-38.309,37.533)
C2: (27.777,-33.391,42.348)
C1': (26.944,-33.267,40.020)
C3': (28.165,-32.956,38.020)
O5': (27.727,-35.952,37.353)
O4': (26.499,-34.194,39.037)
C5': (27.040,-34.876,36.753)
P: (27.736,-37.387,36.687)
C4': (26.903,-33.719,37.714)
C2': (27.774,-32.212,39.300)
O2': (26.908,-31.136,38.998)
N1: (27.691,-33.997,41.096)
O4: (29.480,-35.877,44.166)
O2: (27.346,-32.285,42.489)
C6: (28.181,-35.261,40.909)
C5: (28.763,-35.897,41.913)
O3': (28.612,-32.122,36.946)
N3: (28.409,-34.031,43.392)
OP1: (28.144,-37.279,35.277)
OP2: (28.463,-38.309,37.533)
C2: (27.777,-33.391,42.348)
C1': (26.944,-33.267,40.020)
C3': (28.165,-32.956,38.020)
O5': (27.727,-35.952,37.353)
O4': (26.499,-34.194,39.037)
C5': (27.040,-34.876,36.753)
P: (27.736,-37.387,36.687)
C4': (26.903,-33.719,37.714)
C2': (27.774,-32.212,39.300)
O2': (26.908,-31.136,38.998)
N1: (27.691,-33.997,41.096)
O4: (29.480,-35.877,44.166)
O2: (27.346,-32.285,42.489)
C6: (28.181,-35.261,40.909)
C5: (28.763,-35.897,41.913)
O3': (28.612,-32.122,36.946)
Image (generated by PyMOL):