Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B61:B41
Extra
PDB:
ATOM 1 O3' U A 60 -14.840 36.762 2.039 1.00 65.07 O
ATOM 2 P G A 61 -14.657 38.287 2.526 1.00 67.77 P
ATOM 3 OP1 G A 61 -14.442 39.107 1.300 1.00 68.75 O
ATOM 4 OP2 G A 61 -13.642 38.328 3.613 1.00 65.56 O
ATOM 5 O5' G A 61 -16.073 38.669 3.158 1.00 65.27 O
ATOM 6 C5' G A 61 -17.263 38.633 2.374 1.00 63.98 C
ATOM 7 C4' G A 61 -18.484 38.805 3.257 1.00 64.31 C
ATOM 8 O4' G A 61 -18.539 37.729 4.235 1.00 65.13 O
ATOM 9 C3' G A 61 -18.571 40.074 4.091 1.00 63.60 C
ATOM 10 O3' G A 61 -19.072 41.173 3.338 1.00 62.97 O
ATOM 11 C2' G A 61 -19.496 39.661 5.238 1.00 63.21 C
ATOM 12 O2' G A 61 -20.876 39.692 4.925 1.00 61.61 O
ATOM 13 C1' G A 61 -19.101 38.203 5.445 1.00 62.47 C
ATOM 14 N9 G A 61 -18.127 38.002 6.510 1.00 60.82 N
ATOM 15 C8 G A 61 -16.790 37.723 6.365 1.00 61.10 C
ATOM 16 N7 G A 61 -16.182 37.521 7.503 1.00 61.53 N
ATOM 17 C5 G A 61 -17.177 37.694 8.457 1.00 60.97 C
ATOM 18 C6 G A 61 -17.125 37.590 9.873 1.00 60.96 C
ATOM 19 O6 G A 61 -16.165 37.299 10.590 1.00 61.20 O
ATOM 20 N1 G A 61 -18.359 37.858 10.452 1.00 60.47 N
ATOM 21 C2 G A 61 -19.499 38.175 9.762 1.00 61.21 C
ATOM 22 N2 G A 61 -20.596 38.392 10.501 1.00 60.61 N
ATOM 23 N3 G A 61 -19.564 38.268 8.442 1.00 61.30 N
ATOM 24 C4 G A 61 -18.376 38.014 7.859 1.00 60.56 C
ATOM 25 P G A 62 -18.659 42.673 3.752 1.00 62.35 P
ATOM 26 OP1 G A 62 -19.215 43.563 2.705 1.00 62.98 O
ATOM 27 OP2 G A 62 -17.192 42.685 4.026 1.00 58.35 O
ATOM 28 O5' G A 62 -19.497 42.943 5.079 1.00 60.68 O
TER
ATOM 1 O3' G B 40 -6.365 37.913 13.528 1.00 86.01 O
ATOM 2 P C B 41 -5.918 36.510 12.891 1.00 86.40 P
ATOM 3 OP1 C B 41 -5.474 35.623 13.997 1.00 87.16 O
ATOM 4 OP2 C B 41 -4.999 36.797 11.754 1.00 85.77 O
ATOM 5 O5' C B 41 -7.267 35.921 12.283 1.00 83.87 O
ATOM 6 C5' C B 41 -7.949 34.846 12.919 1.00 79.69 C
ATOM 7 C4' C B 41 -9.046 35.380 13.810 1.00 76.96 C
ATOM 8 O4' C B 41 -9.863 36.335 13.082 1.00 75.44 O
ATOM 9 C3' C B 41 -9.995 34.334 14.373 1.00 75.94 C
ATOM 10 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 11 C2' C B 41 -11.230 34.469 13.491 1.00 73.71 C
ATOM 12 O2' C B 41 -12.420 34.153 14.175 1.00 73.73 O
ATOM 13 C1' C B 41 -11.220 35.957 13.164 1.00 72.91 C
ATOM 14 N1 C B 41 -11.873 36.264 11.883 1.00 70.05 N
ATOM 15 C2 C B 41 -13.252 36.542 11.869 1.00 67.58 C
ATOM 16 O2 C B 41 -13.888 36.529 12.939 1.00 63.85 O
ATOM 17 N3 C B 41 -13.850 36.812 10.689 1.00 66.47 N
ATOM 18 C4 C B 41 -13.138 36.816 9.560 1.00 65.45 C
ATOM 19 N4 C B 41 -13.779 37.084 8.421 1.00 64.07 N
ATOM 20 C5 C B 41 -11.742 36.545 9.550 1.00 65.61 C
ATOM 21 C6 C B 41 -11.155 36.276 10.720 1.00 68.08 C
ATOM 22 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 23 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 24 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 25 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
TER
ATOM 2 P G A 61 -14.657 38.287 2.526 1.00 67.77 P
ATOM 3 OP1 G A 61 -14.442 39.107 1.300 1.00 68.75 O
ATOM 4 OP2 G A 61 -13.642 38.328 3.613 1.00 65.56 O
ATOM 5 O5' G A 61 -16.073 38.669 3.158 1.00 65.27 O
ATOM 6 C5' G A 61 -17.263 38.633 2.374 1.00 63.98 C
ATOM 7 C4' G A 61 -18.484 38.805 3.257 1.00 64.31 C
ATOM 8 O4' G A 61 -18.539 37.729 4.235 1.00 65.13 O
ATOM 9 C3' G A 61 -18.571 40.074 4.091 1.00 63.60 C
ATOM 10 O3' G A 61 -19.072 41.173 3.338 1.00 62.97 O
ATOM 11 C2' G A 61 -19.496 39.661 5.238 1.00 63.21 C
ATOM 12 O2' G A 61 -20.876 39.692 4.925 1.00 61.61 O
ATOM 13 C1' G A 61 -19.101 38.203 5.445 1.00 62.47 C
ATOM 14 N9 G A 61 -18.127 38.002 6.510 1.00 60.82 N
ATOM 15 C8 G A 61 -16.790 37.723 6.365 1.00 61.10 C
ATOM 16 N7 G A 61 -16.182 37.521 7.503 1.00 61.53 N
ATOM 17 C5 G A 61 -17.177 37.694 8.457 1.00 60.97 C
ATOM 18 C6 G A 61 -17.125 37.590 9.873 1.00 60.96 C
ATOM 19 O6 G A 61 -16.165 37.299 10.590 1.00 61.20 O
ATOM 20 N1 G A 61 -18.359 37.858 10.452 1.00 60.47 N
ATOM 21 C2 G A 61 -19.499 38.175 9.762 1.00 61.21 C
ATOM 22 N2 G A 61 -20.596 38.392 10.501 1.00 60.61 N
ATOM 23 N3 G A 61 -19.564 38.268 8.442 1.00 61.30 N
ATOM 24 C4 G A 61 -18.376 38.014 7.859 1.00 60.56 C
ATOM 25 P G A 62 -18.659 42.673 3.752 1.00 62.35 P
ATOM 26 OP1 G A 62 -19.215 43.563 2.705 1.00 62.98 O
ATOM 27 OP2 G A 62 -17.192 42.685 4.026 1.00 58.35 O
ATOM 28 O5' G A 62 -19.497 42.943 5.079 1.00 60.68 O
TER
ATOM 1 O3' G B 40 -6.365 37.913 13.528 1.00 86.01 O
ATOM 2 P C B 41 -5.918 36.510 12.891 1.00 86.40 P
ATOM 3 OP1 C B 41 -5.474 35.623 13.997 1.00 87.16 O
ATOM 4 OP2 C B 41 -4.999 36.797 11.754 1.00 85.77 O
ATOM 5 O5' C B 41 -7.267 35.921 12.283 1.00 83.87 O
ATOM 6 C5' C B 41 -7.949 34.846 12.919 1.00 79.69 C
ATOM 7 C4' C B 41 -9.046 35.380 13.810 1.00 76.96 C
ATOM 8 O4' C B 41 -9.863 36.335 13.082 1.00 75.44 O
ATOM 9 C3' C B 41 -9.995 34.334 14.373 1.00 75.94 C
ATOM 10 O3' C B 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 11 C2' C B 41 -11.230 34.469 13.491 1.00 73.71 C
ATOM 12 O2' C B 41 -12.420 34.153 14.175 1.00 73.73 O
ATOM 13 C1' C B 41 -11.220 35.957 13.164 1.00 72.91 C
ATOM 14 N1 C B 41 -11.873 36.264 11.883 1.00 70.05 N
ATOM 15 C2 C B 41 -13.252 36.542 11.869 1.00 67.58 C
ATOM 16 O2 C B 41 -13.888 36.529 12.939 1.00 63.85 O
ATOM 17 N3 C B 41 -13.850 36.812 10.689 1.00 66.47 N
ATOM 18 C4 C B 41 -13.138 36.816 9.560 1.00 65.45 C
ATOM 19 N4 C B 41 -13.779 37.084 8.421 1.00 64.07 N
ATOM 20 C5 C B 41 -11.742 36.545 9.550 1.00 65.61 C
ATOM 21 C6 C B 41 -11.155 36.276 10.720 1.00 68.08 C
ATOM 22 P A B 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 23 OP1 A B 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 24 OP2 A B 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 25 O5' A B 42 -10.548 34.425 18.172 1.00 77.82 O
TER
Atoms:
OP1: (-14.442,39.107,1.300)
OP2: (-13.642,38.328,3.613)
C3': (-18.571,40.074,4.091)
C1': (-19.101,38.203,5.445)
C5': (-17.263,38.633,2.374)
O6: (-16.165,37.299,10.590)
O4': (-18.539,37.729,4.235)
C8: (-16.790,37.723,6.365)
C2: (-19.499,38.175,9.762)
C6: (-17.125,37.590,9.873)
C5: (-17.177,37.694,8.457)
C4: (-18.376,38.014,7.859)
P: (-14.657,38.287,2.526)
C4': (-18.484,38.805,3.257)
C2': (-19.496,39.661,5.238)
O2': (-20.876,39.692,4.925)
N1: (-18.359,37.858,10.452)
N2: (-20.596,38.392,10.501)
N3: (-19.564,38.268,8.442)
N7: (-16.182,37.521,7.503)
N9: (-18.127,38.002,6.510)
O5': (-16.073,38.669,3.158)
O3': (-19.072,41.173,3.338)
OP2: (-13.642,38.328,3.613)
C3': (-18.571,40.074,4.091)
C1': (-19.101,38.203,5.445)
C5': (-17.263,38.633,2.374)
O6: (-16.165,37.299,10.590)
O4': (-18.539,37.729,4.235)
C8: (-16.790,37.723,6.365)
C2: (-19.499,38.175,9.762)
C6: (-17.125,37.590,9.873)
C5: (-17.177,37.694,8.457)
C4: (-18.376,38.014,7.859)
P: (-14.657,38.287,2.526)
C4': (-18.484,38.805,3.257)
C2': (-19.496,39.661,5.238)
O2': (-20.876,39.692,4.925)
N1: (-18.359,37.858,10.452)
N2: (-20.596,38.392,10.501)
N3: (-19.564,38.268,8.442)
N7: (-16.182,37.521,7.503)
N9: (-18.127,38.002,6.510)
O5': (-16.073,38.669,3.158)
O3': (-19.072,41.173,3.338)
C2: (-13.252,36.542,11.869)
OP1: (-5.474,35.623,13.997)
OP2: (-4.999,36.797,11.754)
C4: (-13.138,36.816,9.560)
O5': (-7.267,35.921,12.283)
C3': (-9.995,34.334,14.373)
C1': (-11.220,35.957,13.164)
O4': (-9.863,36.335,13.082)
C5': (-7.949,34.846,12.919)
P: (-5.918,36.510,12.891)
O2: (-13.888,36.529,12.939)
C4': (-9.046,35.380,13.810)
C2': (-11.230,34.469,13.491)
O2': (-12.420,34.153,14.175)
N1: (-11.873,36.264,11.883)
N3: (-13.850,36.812,10.689)
N4: (-13.779,37.084,8.421)
C6: (-11.155,36.276,10.720)
C5: (-11.742,36.545,9.550)
O3': (-10.339,34.693,15.698)
OP1: (-5.474,35.623,13.997)
OP2: (-4.999,36.797,11.754)
C4: (-13.138,36.816,9.560)
O5': (-7.267,35.921,12.283)
C3': (-9.995,34.334,14.373)
C1': (-11.220,35.957,13.164)
O4': (-9.863,36.335,13.082)
C5': (-7.949,34.846,12.919)
P: (-5.918,36.510,12.891)
O2: (-13.888,36.529,12.939)
C4': (-9.046,35.380,13.810)
C2': (-11.230,34.469,13.491)
O2': (-12.420,34.153,14.175)
N1: (-11.873,36.264,11.883)
N3: (-13.850,36.812,10.689)
N4: (-13.779,37.084,8.421)
C6: (-11.155,36.276,10.720)
C5: (-11.742,36.545,9.550)
O3': (-10.339,34.693,15.698)
Image (generated by PyMOL):