Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:965:9112
Extra
PDB:
ATOM 1 O3' A A 64 55.077 35.516 126.123 1.00 80.15 O
ATOM 2 P G A 65 55.536 36.991 126.600 1.00 78.68 P
ATOM 3 OP1 G A 65 55.303 37.032 128.063 1.00 78.91 O
ATOM 4 OP2 G A 65 54.936 38.044 125.741 1.00 80.79 O
ATOM 5 O5' G A 65 57.116 36.999 126.402 1.00 75.82 O
ATOM 6 C5' G A 65 57.970 37.572 127.409 1.00 73.41 C
ATOM 7 C4' G A 65 59.365 37.773 126.873 1.00 71.38 C
ATOM 8 O4' G A 65 59.909 36.493 126.460 1.00 70.74 O
ATOM 9 C3' G A 65 59.483 38.638 125.631 1.00 70.54 C
ATOM 10 O3' G A 65 59.472 40.024 125.952 1.00 71.11 O
ATOM 11 C2' G A 65 60.815 38.181 125.061 1.00 69.62 C
ATOM 12 O2' G A 65 61.909 38.731 125.768 1.00 66.60 O
ATOM 13 C1' G A 65 60.744 36.675 125.327 1.00 69.84 C
ATOM 14 N9 G A 65 60.180 35.913 124.213 1.00 69.31 N
ATOM 15 C8 G A 65 59.003 35.202 124.198 1.00 69.27 C
ATOM 16 N7 G A 65 58.763 34.631 123.049 1.00 69.29 N
ATOM 17 C5 G A 65 59.845 34.987 122.257 1.00 69.28 C
ATOM 18 C6 G A 65 60.140 34.671 120.901 1.00 69.97 C
ATOM 19 O6 G A 65 59.478 33.993 120.101 1.00 69.49 O
ATOM 20 N1 G A 65 61.347 35.234 120.499 1.00 70.52 N
ATOM 21 C2 G A 65 62.167 35.997 121.297 1.00 71.42 C
ATOM 22 N2 G A 65 63.307 36.437 120.739 1.00 72.45 N
ATOM 23 N3 G A 65 61.897 36.304 122.553 1.00 70.69 N
ATOM 24 C4 G A 65 60.731 35.771 122.964 1.00 69.18 C
ATOM 25 P C A 66 58.777 41.071 124.948 1.00 70.78 P
ATOM 26 OP1 C A 66 58.707 42.375 125.661 1.00 69.20 O
ATOM 27 OP2 C A 66 57.529 40.466 124.395 1.00 69.50 O
ATOM 28 O5' C A 66 59.829 41.200 123.759 1.00 69.25 O
TER
ATOM 1 O3' U B 111 49.802 33.880 113.540 1.00 59.74 O
ATOM 2 P C B 112 50.331 32.422 113.943 1.00 59.63 P
ATOM 3 OP1 C B 112 50.390 31.594 112.716 1.00 58.82 O
ATOM 4 OP2 C B 112 49.547 31.955 115.112 1.00 60.11 O
ATOM 5 O5' C B 112 51.825 32.677 114.411 1.00 58.63 O
ATOM 6 C5' C B 112 52.775 33.205 113.492 1.00 59.19 C
ATOM 7 C4' C B 112 54.030 32.384 113.516 1.00 59.52 C
ATOM 8 O4' C B 112 54.886 32.814 114.607 1.00 60.41 O
ATOM 9 C3' C B 112 53.826 30.886 113.682 1.00 59.38 C
ATOM 10 O3' C B 112 54.745 30.199 112.863 1.00 60.43 O
ATOM 11 C2' C B 112 54.187 30.661 115.144 1.00 61.08 C
ATOM 12 O2' C B 112 54.673 29.357 115.385 1.00 62.66 O
ATOM 13 C1' C B 112 55.303 31.684 115.330 1.00 61.96 C
ATOM 14 N1 C B 112 55.628 32.084 116.715 1.00 64.04 N
ATOM 15 C2 C B 112 56.906 32.617 116.971 1.00 64.83 C
ATOM 16 O2 C B 112 57.691 32.786 116.020 1.00 64.92 O
ATOM 17 N3 C B 112 57.251 32.933 118.245 1.00 65.02 N
ATOM 18 C4 C B 112 56.379 32.742 119.241 1.00 65.17 C
ATOM 19 N4 C B 112 56.776 33.038 120.483 1.00 64.05 N
ATOM 20 C5 C B 112 55.062 32.231 119.007 1.00 64.89 C
ATOM 21 C6 C B 112 54.731 31.924 117.741 1.00 64.73 C
ATOM 22 P G B 113 54.211 29.449 111.553 1.00 63.04 P
ATOM 23 OP1 G B 113 53.215 28.431 111.987 1.00 62.47 O
ATOM 24 OP2 G B 113 55.377 29.040 110.722 1.00 62.45 O
ATOM 25 O5' G B 113 53.428 30.591 110.774 1.00 62.06 O
TER
ATOM 2 P G A 65 55.536 36.991 126.600 1.00 78.68 P
ATOM 3 OP1 G A 65 55.303 37.032 128.063 1.00 78.91 O
ATOM 4 OP2 G A 65 54.936 38.044 125.741 1.00 80.79 O
ATOM 5 O5' G A 65 57.116 36.999 126.402 1.00 75.82 O
ATOM 6 C5' G A 65 57.970 37.572 127.409 1.00 73.41 C
ATOM 7 C4' G A 65 59.365 37.773 126.873 1.00 71.38 C
ATOM 8 O4' G A 65 59.909 36.493 126.460 1.00 70.74 O
ATOM 9 C3' G A 65 59.483 38.638 125.631 1.00 70.54 C
ATOM 10 O3' G A 65 59.472 40.024 125.952 1.00 71.11 O
ATOM 11 C2' G A 65 60.815 38.181 125.061 1.00 69.62 C
ATOM 12 O2' G A 65 61.909 38.731 125.768 1.00 66.60 O
ATOM 13 C1' G A 65 60.744 36.675 125.327 1.00 69.84 C
ATOM 14 N9 G A 65 60.180 35.913 124.213 1.00 69.31 N
ATOM 15 C8 G A 65 59.003 35.202 124.198 1.00 69.27 C
ATOM 16 N7 G A 65 58.763 34.631 123.049 1.00 69.29 N
ATOM 17 C5 G A 65 59.845 34.987 122.257 1.00 69.28 C
ATOM 18 C6 G A 65 60.140 34.671 120.901 1.00 69.97 C
ATOM 19 O6 G A 65 59.478 33.993 120.101 1.00 69.49 O
ATOM 20 N1 G A 65 61.347 35.234 120.499 1.00 70.52 N
ATOM 21 C2 G A 65 62.167 35.997 121.297 1.00 71.42 C
ATOM 22 N2 G A 65 63.307 36.437 120.739 1.00 72.45 N
ATOM 23 N3 G A 65 61.897 36.304 122.553 1.00 70.69 N
ATOM 24 C4 G A 65 60.731 35.771 122.964 1.00 69.18 C
ATOM 25 P C A 66 58.777 41.071 124.948 1.00 70.78 P
ATOM 26 OP1 C A 66 58.707 42.375 125.661 1.00 69.20 O
ATOM 27 OP2 C A 66 57.529 40.466 124.395 1.00 69.50 O
ATOM 28 O5' C A 66 59.829 41.200 123.759 1.00 69.25 O
TER
ATOM 1 O3' U B 111 49.802 33.880 113.540 1.00 59.74 O
ATOM 2 P C B 112 50.331 32.422 113.943 1.00 59.63 P
ATOM 3 OP1 C B 112 50.390 31.594 112.716 1.00 58.82 O
ATOM 4 OP2 C B 112 49.547 31.955 115.112 1.00 60.11 O
ATOM 5 O5' C B 112 51.825 32.677 114.411 1.00 58.63 O
ATOM 6 C5' C B 112 52.775 33.205 113.492 1.00 59.19 C
ATOM 7 C4' C B 112 54.030 32.384 113.516 1.00 59.52 C
ATOM 8 O4' C B 112 54.886 32.814 114.607 1.00 60.41 O
ATOM 9 C3' C B 112 53.826 30.886 113.682 1.00 59.38 C
ATOM 10 O3' C B 112 54.745 30.199 112.863 1.00 60.43 O
ATOM 11 C2' C B 112 54.187 30.661 115.144 1.00 61.08 C
ATOM 12 O2' C B 112 54.673 29.357 115.385 1.00 62.66 O
ATOM 13 C1' C B 112 55.303 31.684 115.330 1.00 61.96 C
ATOM 14 N1 C B 112 55.628 32.084 116.715 1.00 64.04 N
ATOM 15 C2 C B 112 56.906 32.617 116.971 1.00 64.83 C
ATOM 16 O2 C B 112 57.691 32.786 116.020 1.00 64.92 O
ATOM 17 N3 C B 112 57.251 32.933 118.245 1.00 65.02 N
ATOM 18 C4 C B 112 56.379 32.742 119.241 1.00 65.17 C
ATOM 19 N4 C B 112 56.776 33.038 120.483 1.00 64.05 N
ATOM 20 C5 C B 112 55.062 32.231 119.007 1.00 64.89 C
ATOM 21 C6 C B 112 54.731 31.924 117.741 1.00 64.73 C
ATOM 22 P G B 113 54.211 29.449 111.553 1.00 63.04 P
ATOM 23 OP1 G B 113 53.215 28.431 111.987 1.00 62.47 O
ATOM 24 OP2 G B 113 55.377 29.040 110.722 1.00 62.45 O
ATOM 25 O5' G B 113 53.428 30.591 110.774 1.00 62.06 O
TER
Atoms:
OP1: (55.303,37.032,128.063)
OP2: (54.936,38.044,125.741)
C3': (59.483,38.638,125.631)
C1': (60.744,36.675,125.327)
C5': (57.970,37.572,127.409)
O6: (59.478,33.993,120.101)
O4': (59.909,36.493,126.460)
C8: (59.003,35.202,124.198)
C2: (62.167,35.997,121.297)
C6: (60.140,34.671,120.901)
C5: (59.845,34.987,122.257)
C4: (60.731,35.771,122.964)
P: (55.536,36.991,126.600)
C4': (59.365,37.773,126.873)
C2': (60.815,38.181,125.061)
O2': (61.909,38.731,125.768)
N1: (61.347,35.234,120.499)
N2: (63.307,36.437,120.739)
N3: (61.897,36.304,122.553)
N7: (58.763,34.631,123.049)
N9: (60.180,35.913,124.213)
O5': (57.116,36.999,126.402)
O3': (59.472,40.024,125.952)
OP2: (54.936,38.044,125.741)
C3': (59.483,38.638,125.631)
C1': (60.744,36.675,125.327)
C5': (57.970,37.572,127.409)
O6: (59.478,33.993,120.101)
O4': (59.909,36.493,126.460)
C8: (59.003,35.202,124.198)
C2: (62.167,35.997,121.297)
C6: (60.140,34.671,120.901)
C5: (59.845,34.987,122.257)
C4: (60.731,35.771,122.964)
P: (55.536,36.991,126.600)
C4': (59.365,37.773,126.873)
C2': (60.815,38.181,125.061)
O2': (61.909,38.731,125.768)
N1: (61.347,35.234,120.499)
N2: (63.307,36.437,120.739)
N3: (61.897,36.304,122.553)
N7: (58.763,34.631,123.049)
N9: (60.180,35.913,124.213)
O5': (57.116,36.999,126.402)
O3': (59.472,40.024,125.952)
C2: (56.906,32.617,116.971)
OP1: (50.390,31.594,112.716)
OP2: (49.547,31.955,115.112)
C4: (56.379,32.742,119.241)
O5': (51.825,32.677,114.411)
C3': (53.826,30.886,113.682)
C1': (55.303,31.684,115.330)
O4': (54.886,32.814,114.607)
C5': (52.775,33.205,113.492)
P: (50.331,32.422,113.943)
O2: (57.691,32.786,116.020)
C4': (54.030,32.384,113.516)
C2': (54.187,30.661,115.144)
O2': (54.673,29.357,115.385)
N1: (55.628,32.084,116.715)
N3: (57.251,32.933,118.245)
N4: (56.776,33.038,120.483)
C6: (54.731,31.924,117.741)
C5: (55.062,32.231,119.007)
O3': (54.745,30.199,112.863)
OP1: (50.390,31.594,112.716)
OP2: (49.547,31.955,115.112)
C4: (56.379,32.742,119.241)
O5': (51.825,32.677,114.411)
C3': (53.826,30.886,113.682)
C1': (55.303,31.684,115.330)
O4': (54.886,32.814,114.607)
C5': (52.775,33.205,113.492)
P: (50.331,32.422,113.943)
O2: (57.691,32.786,116.020)
C4': (54.030,32.384,113.516)
C2': (54.187,30.661,115.144)
O2': (54.673,29.357,115.385)
N1: (55.628,32.084,116.715)
N3: (57.251,32.933,118.245)
N4: (56.776,33.038,120.483)
C6: (54.731,31.924,117.741)
C5: (55.062,32.231,119.007)
O3': (54.745,30.199,112.863)
Image (generated by PyMOL):