Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02505:02504
Extra
PDB:
ATOM 1 O3' U A2504 16.644 145.243 121.944 1.00 53.63 O
ATOM 2 P A A2505 15.426 146.222 122.316 1.00 56.75 P
ATOM 3 OP1 A A2505 15.961 147.324 123.151 1.00 55.90 O
ATOM 4 OP2 A A2505 14.349 145.349 122.849 1.00 56.81 O
ATOM 5 O5' A A2505 14.956 146.818 120.912 1.00 61.99 O
ATOM 6 C5' A A2505 13.573 147.178 120.661 1.00 69.95 C
ATOM 7 C4' A A2505 13.503 148.502 119.924 1.00 75.81 C
ATOM 8 O4' A A2505 14.081 149.530 120.769 1.00 78.41 O
ATOM 9 C3' A A2505 14.288 148.576 118.619 1.00 78.17 C
ATOM 10 O3' A A2505 13.503 148.141 117.508 1.00 78.37 O
ATOM 11 C2' A A2505 14.630 150.056 118.504 1.00 80.04 C
ATOM 12 O2' A A2505 13.563 150.797 117.936 1.00 78.92 O
ATOM 13 C1' A A2505 14.826 150.441 119.978 1.00 81.16 C
ATOM 14 N9 A A2505 16.202 150.473 120.497 1.00 83.57 N
ATOM 15 C8 A A2505 16.789 149.577 121.364 1.00 84.03 C
ATOM 16 N7 A A2505 18.008 149.905 121.725 1.00 83.50 N
ATOM 17 C5 A A2505 18.251 151.087 121.040 1.00 84.00 C
ATOM 18 C6 A A2505 19.363 151.949 121.009 1.00 84.16 C
ATOM 19 N6 A A2505 20.471 151.760 121.730 1.00 83.47 N
ATOM 20 N1 A A2505 19.292 153.035 120.209 1.00 84.73 N
ATOM 21 C2 A A2505 18.169 153.242 119.507 1.00 85.57 C
ATOM 22 N3 A A2505 17.051 152.516 119.464 1.00 84.95 N
ATOM 23 C4 A A2505 17.157 151.438 120.261 1.00 84.30 C
TER
ATOM 1 O3' G B2503 18.056 145.315 115.857 1.00 43.70 O
ATOM 2 P U B2504 17.006 146.044 116.829 1.00 43.62 P
ATOM 3 OP1 U B2504 15.740 145.256 116.759 1.00 42.33 O
ATOM 4 OP2 U B2504 16.992 147.488 116.490 1.00 43.03 O
ATOM 5 O5' U B2504 17.643 145.874 118.283 1.00 43.94 O
ATOM 6 C5' U B2504 17.653 144.587 118.946 1.00 43.71 C
ATOM 7 C4' U B2504 18.327 144.691 120.294 1.00 45.31 C
ATOM 8 O4' U B2504 19.716 145.063 120.118 1.00 45.24 O
ATOM 9 C3' U B2504 17.775 145.745 121.239 1.00 47.25 C
ATOM 10 O3' U B2504 16.644 145.243 121.944 1.00 53.63 O
ATOM 11 C2' U B2504 18.953 145.988 122.172 1.00 44.81 C
ATOM 12 O2' U B2504 19.076 144.987 123.157 1.00 46.42 O
ATOM 13 C1' U B2504 20.134 145.868 121.207 1.00 43.08 C
ATOM 14 N1 U B2504 20.599 147.160 120.685 1.00 41.44 N
ATOM 15 C2 U B2504 21.557 147.845 121.416 1.00 41.48 C
ATOM 16 O2 U B2504 22.032 147.419 122.457 1.00 41.12 O
ATOM 17 N3 U B2504 21.937 149.053 120.884 1.00 41.13 N
ATOM 18 C4 U B2504 21.468 149.635 119.723 1.00 41.03 C
ATOM 19 O4 U B2504 21.861 150.759 119.410 1.00 42.62 O
ATOM 20 C5 U B2504 20.493 148.862 119.021 1.00 40.20 C
ATOM 21 C6 U B2504 20.101 147.683 119.511 1.00 41.29 C
ATOM 22 P A B2505 15.426 146.222 122.316 1.00 56.75 P
ATOM 23 OP1 A B2505 15.961 147.324 123.151 1.00 55.90 O
ATOM 24 OP2 A B2505 14.349 145.349 122.849 1.00 56.81 O
ATOM 25 O5' A B2505 14.956 146.818 120.912 1.00 61.99 O
TER
ATOM 2 P A A2505 15.426 146.222 122.316 1.00 56.75 P
ATOM 3 OP1 A A2505 15.961 147.324 123.151 1.00 55.90 O
ATOM 4 OP2 A A2505 14.349 145.349 122.849 1.00 56.81 O
ATOM 5 O5' A A2505 14.956 146.818 120.912 1.00 61.99 O
ATOM 6 C5' A A2505 13.573 147.178 120.661 1.00 69.95 C
ATOM 7 C4' A A2505 13.503 148.502 119.924 1.00 75.81 C
ATOM 8 O4' A A2505 14.081 149.530 120.769 1.00 78.41 O
ATOM 9 C3' A A2505 14.288 148.576 118.619 1.00 78.17 C
ATOM 10 O3' A A2505 13.503 148.141 117.508 1.00 78.37 O
ATOM 11 C2' A A2505 14.630 150.056 118.504 1.00 80.04 C
ATOM 12 O2' A A2505 13.563 150.797 117.936 1.00 78.92 O
ATOM 13 C1' A A2505 14.826 150.441 119.978 1.00 81.16 C
ATOM 14 N9 A A2505 16.202 150.473 120.497 1.00 83.57 N
ATOM 15 C8 A A2505 16.789 149.577 121.364 1.00 84.03 C
ATOM 16 N7 A A2505 18.008 149.905 121.725 1.00 83.50 N
ATOM 17 C5 A A2505 18.251 151.087 121.040 1.00 84.00 C
ATOM 18 C6 A A2505 19.363 151.949 121.009 1.00 84.16 C
ATOM 19 N6 A A2505 20.471 151.760 121.730 1.00 83.47 N
ATOM 20 N1 A A2505 19.292 153.035 120.209 1.00 84.73 N
ATOM 21 C2 A A2505 18.169 153.242 119.507 1.00 85.57 C
ATOM 22 N3 A A2505 17.051 152.516 119.464 1.00 84.95 N
ATOM 23 C4 A A2505 17.157 151.438 120.261 1.00 84.30 C
TER
ATOM 1 O3' G B2503 18.056 145.315 115.857 1.00 43.70 O
ATOM 2 P U B2504 17.006 146.044 116.829 1.00 43.62 P
ATOM 3 OP1 U B2504 15.740 145.256 116.759 1.00 42.33 O
ATOM 4 OP2 U B2504 16.992 147.488 116.490 1.00 43.03 O
ATOM 5 O5' U B2504 17.643 145.874 118.283 1.00 43.94 O
ATOM 6 C5' U B2504 17.653 144.587 118.946 1.00 43.71 C
ATOM 7 C4' U B2504 18.327 144.691 120.294 1.00 45.31 C
ATOM 8 O4' U B2504 19.716 145.063 120.118 1.00 45.24 O
ATOM 9 C3' U B2504 17.775 145.745 121.239 1.00 47.25 C
ATOM 10 O3' U B2504 16.644 145.243 121.944 1.00 53.63 O
ATOM 11 C2' U B2504 18.953 145.988 122.172 1.00 44.81 C
ATOM 12 O2' U B2504 19.076 144.987 123.157 1.00 46.42 O
ATOM 13 C1' U B2504 20.134 145.868 121.207 1.00 43.08 C
ATOM 14 N1 U B2504 20.599 147.160 120.685 1.00 41.44 N
ATOM 15 C2 U B2504 21.557 147.845 121.416 1.00 41.48 C
ATOM 16 O2 U B2504 22.032 147.419 122.457 1.00 41.12 O
ATOM 17 N3 U B2504 21.937 149.053 120.884 1.00 41.13 N
ATOM 18 C4 U B2504 21.468 149.635 119.723 1.00 41.03 C
ATOM 19 O4 U B2504 21.861 150.759 119.410 1.00 42.62 O
ATOM 20 C5 U B2504 20.493 148.862 119.021 1.00 40.20 C
ATOM 21 C6 U B2504 20.101 147.683 119.511 1.00 41.29 C
ATOM 22 P A B2505 15.426 146.222 122.316 1.00 56.75 P
ATOM 23 OP1 A B2505 15.961 147.324 123.151 1.00 55.90 O
ATOM 24 OP2 A B2505 14.349 145.349 122.849 1.00 56.81 O
ATOM 25 O5' A B2505 14.956 146.818 120.912 1.00 61.99 O
TER
Atoms:
OP1: (15.961,147.324,123.151)
OP2: (14.349,145.349,122.849)
C3': (14.288,148.576,118.619)
C1': (14.826,150.441,119.978)
C5': (13.573,147.178,120.661)
O4': (14.081,149.530,120.769)
C8: (16.789,149.577,121.364)
O2': (13.563,150.797,117.936)
C6: (19.363,151.949,121.009)
C5: (18.251,151.087,121.040)
C4: (17.157,151.438,120.261)
P: (15.426,146.222,122.316)
C4': (13.503,148.502,119.924)
C2': (14.630,150.056,118.504)
C2: (18.169,153.242,119.507)
N1: (19.292,153.035,120.209)
N3: (17.051,152.516,119.464)
N6: (20.471,151.760,121.730)
N7: (18.008,149.905,121.725)
N9: (16.202,150.473,120.497)
O5': (14.956,146.818,120.912)
O3': (13.503,148.141,117.508)
OP2: (14.349,145.349,122.849)
C3': (14.288,148.576,118.619)
C1': (14.826,150.441,119.978)
C5': (13.573,147.178,120.661)
O4': (14.081,149.530,120.769)
C8: (16.789,149.577,121.364)
O2': (13.563,150.797,117.936)
C6: (19.363,151.949,121.009)
C5: (18.251,151.087,121.040)
C4: (17.157,151.438,120.261)
P: (15.426,146.222,122.316)
C4': (13.503,148.502,119.924)
C2': (14.630,150.056,118.504)
C2: (18.169,153.242,119.507)
N1: (19.292,153.035,120.209)
N3: (17.051,152.516,119.464)
N6: (20.471,151.760,121.730)
N7: (18.008,149.905,121.725)
N9: (16.202,150.473,120.497)
O5': (14.956,146.818,120.912)
O3': (13.503,148.141,117.508)
C4: (21.468,149.635,119.723)
N3: (21.937,149.053,120.884)
OP1: (15.740,145.256,116.759)
OP2: (16.992,147.488,116.490)
C2: (21.557,147.845,121.416)
C1': (20.134,145.868,121.207)
C3': (17.775,145.745,121.239)
O5': (17.643,145.874,118.283)
O4': (19.716,145.063,120.118)
C5': (17.653,144.587,118.946)
P: (17.006,146.044,116.829)
C4': (18.327,144.691,120.294)
C2': (18.953,145.988,122.172)
O2': (19.076,144.987,123.157)
N1: (20.599,147.160,120.685)
O4: (21.861,150.759,119.410)
O2: (22.032,147.419,122.457)
C6: (20.101,147.683,119.511)
C5: (20.493,148.862,119.021)
O3': (16.644,145.243,121.944)
N3: (21.937,149.053,120.884)
OP1: (15.740,145.256,116.759)
OP2: (16.992,147.488,116.490)
C2: (21.557,147.845,121.416)
C1': (20.134,145.868,121.207)
C3': (17.775,145.745,121.239)
O5': (17.643,145.874,118.283)
O4': (19.716,145.063,120.118)
C5': (17.653,144.587,118.946)
P: (17.006,146.044,116.829)
C4': (18.327,144.691,120.294)
C2': (18.953,145.988,122.172)
O2': (19.076,144.987,123.157)
N1: (20.599,147.160,120.685)
O4: (21.861,150.759,119.410)
O2: (22.032,147.419,122.457)
C6: (20.101,147.683,119.511)
C5: (20.493,148.862,119.021)
O3': (16.644,145.243,121.944)
Image (generated by PyMOL):