Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02505:02504
Extra
PDB:
ATOM 1 O3' U A2504 16.749 145.174 121.942 1.00 58.01 O
ATOM 2 P A A2505 15.482 146.116 122.233 1.00 62.13 P
ATOM 3 OP1 A A2505 15.932 147.262 123.065 1.00 59.66 O
ATOM 4 OP2 A A2505 14.419 145.205 122.732 1.00 61.23 O
ATOM 5 O5' A A2505 15.035 146.665 120.803 1.00 67.65 O
ATOM 6 C5' A A2505 13.674 147.101 120.552 1.00 76.04 C
ATOM 7 C4' A A2505 13.666 148.483 119.923 1.00 81.50 C
ATOM 8 O4' A A2505 14.336 149.406 120.821 1.00 83.93 O
ATOM 9 C3' A A2505 14.407 148.626 118.598 1.00 84.08 C
ATOM 10 O3' A A2505 13.570 148.286 117.486 1.00 83.29 O
ATOM 11 C2' A A2505 14.801 150.100 118.578 1.00 85.96 C
ATOM 12 O2' A A2505 13.759 150.930 118.087 1.00 86.17 O
ATOM 13 C1' A A2505 15.048 150.376 120.070 1.00 87.32 C
ATOM 14 N9 A A2505 16.437 150.412 120.554 1.00 90.37 N
ATOM 15 C8 A A2505 17.062 149.506 121.384 1.00 90.88 C
ATOM 16 N7 A A2505 18.290 149.838 121.707 1.00 90.80 N
ATOM 17 C5 A A2505 18.501 151.035 121.035 1.00 91.72 C
ATOM 18 C6 A A2505 19.610 151.906 120.974 1.00 92.39 C
ATOM 19 N6 A A2505 20.752 151.705 121.634 1.00 92.89 N
ATOM 20 N1 A A2505 19.498 153.010 120.205 1.00 92.91 N
ATOM 21 C2 A A2505 18.345 153.225 119.556 1.00 93.75 C
ATOM 22 N3 A A2505 17.231 152.490 119.540 1.00 92.88 N
ATOM 23 C4 A A2505 17.374 151.394 120.307 1.00 91.87 C
TER
ATOM 1 O3' G B2503 18.102 145.240 115.802 1.00 50.32 O
ATOM 2 P U B2504 17.045 146.002 116.737 1.00 50.87 P
ATOM 3 OP1 U B2504 15.761 145.248 116.631 1.00 46.38 O
ATOM 4 OP2 U B2504 17.083 147.446 116.402 1.00 49.32 O
ATOM 5 O5' U B2504 17.639 145.832 118.209 1.00 50.32 O
ATOM 6 C5' U B2504 17.596 144.554 118.885 1.00 49.75 C
ATOM 7 C4' U B2504 18.332 144.625 120.202 1.00 50.36 C
ATOM 8 O4' U B2504 19.713 144.980 119.962 1.00 49.47 O
ATOM 9 C3' U B2504 17.850 145.670 121.192 1.00 52.08 C
ATOM 10 O3' U B2504 16.749 145.174 121.942 1.00 58.01 O
ATOM 11 C2' U B2504 19.076 145.871 122.071 1.00 50.43 C
ATOM 12 O2' U B2504 19.235 144.862 123.044 1.00 52.42 O
ATOM 13 C1' U B2504 20.204 145.742 121.049 1.00 48.50 C
ATOM 14 N1 U B2504 20.671 147.037 120.539 1.00 48.64 N
ATOM 15 C2 U B2504 21.640 147.700 121.273 1.00 48.46 C
ATOM 16 O2 U B2504 22.119 147.247 122.304 1.00 48.03 O
ATOM 17 N3 U B2504 22.027 148.913 120.756 1.00 47.43 N
ATOM 18 C4 U B2504 21.557 149.514 119.605 1.00 47.08 C
ATOM 19 O4 U B2504 21.988 150.623 119.284 1.00 48.44 O
ATOM 20 C5 U B2504 20.565 148.763 118.899 1.00 47.26 C
ATOM 21 C6 U B2504 20.165 147.582 119.375 1.00 48.08 C
ATOM 22 P A B2505 15.482 146.116 122.233 1.00 62.13 P
ATOM 23 OP1 A B2505 15.932 147.262 123.065 1.00 59.66 O
ATOM 24 OP2 A B2505 14.419 145.205 122.732 1.00 61.23 O
ATOM 25 O5' A B2505 15.035 146.665 120.803 1.00 67.65 O
TER
ATOM 2 P A A2505 15.482 146.116 122.233 1.00 62.13 P
ATOM 3 OP1 A A2505 15.932 147.262 123.065 1.00 59.66 O
ATOM 4 OP2 A A2505 14.419 145.205 122.732 1.00 61.23 O
ATOM 5 O5' A A2505 15.035 146.665 120.803 1.00 67.65 O
ATOM 6 C5' A A2505 13.674 147.101 120.552 1.00 76.04 C
ATOM 7 C4' A A2505 13.666 148.483 119.923 1.00 81.50 C
ATOM 8 O4' A A2505 14.336 149.406 120.821 1.00 83.93 O
ATOM 9 C3' A A2505 14.407 148.626 118.598 1.00 84.08 C
ATOM 10 O3' A A2505 13.570 148.286 117.486 1.00 83.29 O
ATOM 11 C2' A A2505 14.801 150.100 118.578 1.00 85.96 C
ATOM 12 O2' A A2505 13.759 150.930 118.087 1.00 86.17 O
ATOM 13 C1' A A2505 15.048 150.376 120.070 1.00 87.32 C
ATOM 14 N9 A A2505 16.437 150.412 120.554 1.00 90.37 N
ATOM 15 C8 A A2505 17.062 149.506 121.384 1.00 90.88 C
ATOM 16 N7 A A2505 18.290 149.838 121.707 1.00 90.80 N
ATOM 17 C5 A A2505 18.501 151.035 121.035 1.00 91.72 C
ATOM 18 C6 A A2505 19.610 151.906 120.974 1.00 92.39 C
ATOM 19 N6 A A2505 20.752 151.705 121.634 1.00 92.89 N
ATOM 20 N1 A A2505 19.498 153.010 120.205 1.00 92.91 N
ATOM 21 C2 A A2505 18.345 153.225 119.556 1.00 93.75 C
ATOM 22 N3 A A2505 17.231 152.490 119.540 1.00 92.88 N
ATOM 23 C4 A A2505 17.374 151.394 120.307 1.00 91.87 C
TER
ATOM 1 O3' G B2503 18.102 145.240 115.802 1.00 50.32 O
ATOM 2 P U B2504 17.045 146.002 116.737 1.00 50.87 P
ATOM 3 OP1 U B2504 15.761 145.248 116.631 1.00 46.38 O
ATOM 4 OP2 U B2504 17.083 147.446 116.402 1.00 49.32 O
ATOM 5 O5' U B2504 17.639 145.832 118.209 1.00 50.32 O
ATOM 6 C5' U B2504 17.596 144.554 118.885 1.00 49.75 C
ATOM 7 C4' U B2504 18.332 144.625 120.202 1.00 50.36 C
ATOM 8 O4' U B2504 19.713 144.980 119.962 1.00 49.47 O
ATOM 9 C3' U B2504 17.850 145.670 121.192 1.00 52.08 C
ATOM 10 O3' U B2504 16.749 145.174 121.942 1.00 58.01 O
ATOM 11 C2' U B2504 19.076 145.871 122.071 1.00 50.43 C
ATOM 12 O2' U B2504 19.235 144.862 123.044 1.00 52.42 O
ATOM 13 C1' U B2504 20.204 145.742 121.049 1.00 48.50 C
ATOM 14 N1 U B2504 20.671 147.037 120.539 1.00 48.64 N
ATOM 15 C2 U B2504 21.640 147.700 121.273 1.00 48.46 C
ATOM 16 O2 U B2504 22.119 147.247 122.304 1.00 48.03 O
ATOM 17 N3 U B2504 22.027 148.913 120.756 1.00 47.43 N
ATOM 18 C4 U B2504 21.557 149.514 119.605 1.00 47.08 C
ATOM 19 O4 U B2504 21.988 150.623 119.284 1.00 48.44 O
ATOM 20 C5 U B2504 20.565 148.763 118.899 1.00 47.26 C
ATOM 21 C6 U B2504 20.165 147.582 119.375 1.00 48.08 C
ATOM 22 P A B2505 15.482 146.116 122.233 1.00 62.13 P
ATOM 23 OP1 A B2505 15.932 147.262 123.065 1.00 59.66 O
ATOM 24 OP2 A B2505 14.419 145.205 122.732 1.00 61.23 O
ATOM 25 O5' A B2505 15.035 146.665 120.803 1.00 67.65 O
TER
Atoms:
OP1: (15.932,147.262,123.065)
OP2: (14.419,145.205,122.732)
C3': (14.407,148.626,118.598)
C1': (15.048,150.376,120.070)
C5': (13.674,147.101,120.552)
O4': (14.336,149.406,120.821)
C8: (17.062,149.506,121.384)
O2': (13.759,150.930,118.087)
C6: (19.610,151.906,120.974)
C5: (18.501,151.035,121.035)
C4: (17.374,151.394,120.307)
P: (15.482,146.116,122.233)
C4': (13.666,148.483,119.923)
C2': (14.801,150.100,118.578)
C2: (18.345,153.225,119.556)
N1: (19.498,153.010,120.205)
N3: (17.231,152.490,119.540)
N6: (20.752,151.705,121.634)
N7: (18.290,149.838,121.707)
N9: (16.437,150.412,120.554)
O5': (15.035,146.665,120.803)
O3': (13.570,148.286,117.486)
OP2: (14.419,145.205,122.732)
C3': (14.407,148.626,118.598)
C1': (15.048,150.376,120.070)
C5': (13.674,147.101,120.552)
O4': (14.336,149.406,120.821)
C8: (17.062,149.506,121.384)
O2': (13.759,150.930,118.087)
C6: (19.610,151.906,120.974)
C5: (18.501,151.035,121.035)
C4: (17.374,151.394,120.307)
P: (15.482,146.116,122.233)
C4': (13.666,148.483,119.923)
C2': (14.801,150.100,118.578)
C2: (18.345,153.225,119.556)
N1: (19.498,153.010,120.205)
N3: (17.231,152.490,119.540)
N6: (20.752,151.705,121.634)
N7: (18.290,149.838,121.707)
N9: (16.437,150.412,120.554)
O5': (15.035,146.665,120.803)
O3': (13.570,148.286,117.486)
C4: (21.557,149.514,119.605)
N3: (22.027,148.913,120.756)
OP1: (15.761,145.248,116.631)
OP2: (17.083,147.446,116.402)
C2: (21.640,147.700,121.273)
C1': (20.204,145.742,121.049)
C3': (17.850,145.670,121.192)
O5': (17.639,145.832,118.209)
O4': (19.713,144.980,119.962)
C5': (17.596,144.554,118.885)
P: (17.045,146.002,116.737)
C4': (18.332,144.625,120.202)
C2': (19.076,145.871,122.071)
O2': (19.235,144.862,123.044)
N1: (20.671,147.037,120.539)
O4: (21.988,150.623,119.284)
O2: (22.119,147.247,122.304)
C6: (20.165,147.582,119.375)
C5: (20.565,148.763,118.899)
O3': (16.749,145.174,121.942)
N3: (22.027,148.913,120.756)
OP1: (15.761,145.248,116.631)
OP2: (17.083,147.446,116.402)
C2: (21.640,147.700,121.273)
C1': (20.204,145.742,121.049)
C3': (17.850,145.670,121.192)
O5': (17.639,145.832,118.209)
O4': (19.713,144.980,119.962)
C5': (17.596,144.554,118.885)
P: (17.045,146.002,116.737)
C4': (18.332,144.625,120.202)
C2': (19.076,145.871,122.071)
O2': (19.235,144.862,123.044)
N1: (20.671,147.037,120.539)
O4: (21.988,150.623,119.284)
O2: (22.119,147.247,122.304)
C6: (20.165,147.582,119.375)
C5: (20.565,148.763,118.899)
O3': (16.749,145.174,121.942)
Image (generated by PyMOL):