Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1XPF:B3:B4
Extra
PDB:
ATOM 1 O3' U A 2 8.370 -18.648 48.890 1.00 32.29 O
ATOM 2 P G A 3 8.520 -17.183 49.563 1.00 34.54 P
ATOM 3 OP1 G A 3 8.351 -16.182 48.490 1.00 35.67 O
ATOM 4 OP2 G A 3 9.775 -17.183 50.352 1.00 34.15 O
ATOM 5 O5' G A 3 7.273 -17.067 50.568 1.00 31.25 O
ATOM 6 C5' G A 3 5.923 -16.889 50.072 1.00 30.17 C
ATOM 7 C4' G A 3 4.894 -17.069 51.186 1.00 31.30 C
ATOM 8 O4' G A 3 5.018 -18.401 51.774 1.00 31.73 O
ATOM 9 C3' G A 3 4.981 -16.141 52.392 1.00 32.14 C
ATOM 10 O3' G A 3 4.415 -14.850 52.138 1.00 33.86 O
ATOM 11 C2' G A 3 4.198 -16.925 53.446 1.00 32.31 C
ATOM 12 O2' G A 3 2.794 -16.849 53.265 1.00 32.59 O
ATOM 13 C1' G A 3 4.646 -18.362 53.152 1.00 31.02 C
ATOM 14 N9 G A 3 5.789 -18.780 53.969 1.00 29.45 N
ATOM 15 C8 G A 3 7.099 -18.864 53.565 1.00 28.05 C
ATOM 16 N7 G A 3 7.909 -19.240 54.520 1.00 28.45 N
ATOM 17 C5 G A 3 7.088 -19.427 55.624 1.00 28.71 C
ATOM 18 C6 G A 3 7.406 -19.836 56.964 1.00 29.75 C
ATOM 19 O6 G A 3 8.512 -20.138 57.447 1.00 28.25 O
ATOM 20 N1 G A 3 6.273 -19.875 57.768 1.00 29.61 N
ATOM 21 C2 G A 3 5.005 -19.568 57.354 1.00 30.48 C
ATOM 22 N2 G A 3 4.055 -19.630 58.301 1.00 30.37 N
ATOM 23 N3 G A 3 4.690 -19.213 56.109 1.00 30.38 N
ATOM 24 C4 G A 3 5.774 -19.155 55.306 1.00 29.02 C
ATOM 25 P C A 4 5.007 -13.542 52.895 1.00 37.73 P
ATOM 26 OP1 C A 4 4.392 -12.340 52.270 1.00 36.81 O
ATOM 27 OP2 C A 4 6.497 -13.659 52.937 1.00 37.97 O
ATOM 28 O5' C A 4 4.468 -13.658 54.399 1.00 36.01 O
TER
ATOM 1 O3' G B 3 4.415 -14.850 52.138 1.00 33.86 O
ATOM 2 P C B 4 5.007 -13.542 52.895 1.00 37.73 P
ATOM 3 OP1 C B 4 4.392 -12.340 52.270 1.00 36.81 O
ATOM 4 OP2 C B 4 6.497 -13.659 52.937 1.00 37.97 O
ATOM 5 O5' C B 4 4.468 -13.658 54.399 1.00 36.01 O
ATOM 6 C5' C B 4 3.050 -13.622 54.680 1.00 37.19 C
ATOM 7 C4' C B 4 2.763 -14.044 56.110 1.00 37.41 C
ATOM 8 O4' C B 4 3.225 -15.405 56.328 1.00 37.59 O
ATOM 9 C3' C B 4 3.425 -13.263 57.236 1.00 38.42 C
ATOM 10 O3' C B 4 2.736 -12.047 57.520 1.00 40.84 O
ATOM 11 C2' C B 4 3.290 -14.245 58.391 1.00 37.52 C
ATOM 12 O2' C B 4 1.962 -14.297 58.865 1.00 35.16 O
ATOM 13 C1' C B 4 3.591 -15.570 57.691 1.00 36.78 C
ATOM 14 N1 C B 4 5.018 -15.924 57.750 1.00 36.81 N
ATOM 15 C2 C B 4 5.535 -16.477 58.927 1.00 38.00 C
ATOM 16 O2 C B 4 4.778 -16.667 59.889 1.00 41.19 O
ATOM 17 N3 C B 4 6.847 -16.794 58.988 1.00 37.71 N
ATOM 18 C4 C B 4 7.632 -16.589 57.931 1.00 37.66 C
ATOM 19 N4 C B 4 8.921 -16.930 58.031 1.00 38.34 N
ATOM 20 C5 C B 4 7.132 -16.029 56.721 1.00 37.44 C
ATOM 21 C6 C B 4 5.832 -15.714 56.675 1.00 37.49 C
ATOM 22 P U B 5 3.553 -10.759 58.054 1.00 42.84 P
ATOM 23 OP1 U B 5 2.575 -9.641 58.098 1.00 43.18 O
ATOM 24 OP2 U B 5 4.799 -10.592 57.263 1.00 40.67 O
ATOM 25 O5' U B 5 3.970 -11.155 59.548 1.00 41.41 O
TER
ATOM 2 P G A 3 8.520 -17.183 49.563 1.00 34.54 P
ATOM 3 OP1 G A 3 8.351 -16.182 48.490 1.00 35.67 O
ATOM 4 OP2 G A 3 9.775 -17.183 50.352 1.00 34.15 O
ATOM 5 O5' G A 3 7.273 -17.067 50.568 1.00 31.25 O
ATOM 6 C5' G A 3 5.923 -16.889 50.072 1.00 30.17 C
ATOM 7 C4' G A 3 4.894 -17.069 51.186 1.00 31.30 C
ATOM 8 O4' G A 3 5.018 -18.401 51.774 1.00 31.73 O
ATOM 9 C3' G A 3 4.981 -16.141 52.392 1.00 32.14 C
ATOM 10 O3' G A 3 4.415 -14.850 52.138 1.00 33.86 O
ATOM 11 C2' G A 3 4.198 -16.925 53.446 1.00 32.31 C
ATOM 12 O2' G A 3 2.794 -16.849 53.265 1.00 32.59 O
ATOM 13 C1' G A 3 4.646 -18.362 53.152 1.00 31.02 C
ATOM 14 N9 G A 3 5.789 -18.780 53.969 1.00 29.45 N
ATOM 15 C8 G A 3 7.099 -18.864 53.565 1.00 28.05 C
ATOM 16 N7 G A 3 7.909 -19.240 54.520 1.00 28.45 N
ATOM 17 C5 G A 3 7.088 -19.427 55.624 1.00 28.71 C
ATOM 18 C6 G A 3 7.406 -19.836 56.964 1.00 29.75 C
ATOM 19 O6 G A 3 8.512 -20.138 57.447 1.00 28.25 O
ATOM 20 N1 G A 3 6.273 -19.875 57.768 1.00 29.61 N
ATOM 21 C2 G A 3 5.005 -19.568 57.354 1.00 30.48 C
ATOM 22 N2 G A 3 4.055 -19.630 58.301 1.00 30.37 N
ATOM 23 N3 G A 3 4.690 -19.213 56.109 1.00 30.38 N
ATOM 24 C4 G A 3 5.774 -19.155 55.306 1.00 29.02 C
ATOM 25 P C A 4 5.007 -13.542 52.895 1.00 37.73 P
ATOM 26 OP1 C A 4 4.392 -12.340 52.270 1.00 36.81 O
ATOM 27 OP2 C A 4 6.497 -13.659 52.937 1.00 37.97 O
ATOM 28 O5' C A 4 4.468 -13.658 54.399 1.00 36.01 O
TER
ATOM 1 O3' G B 3 4.415 -14.850 52.138 1.00 33.86 O
ATOM 2 P C B 4 5.007 -13.542 52.895 1.00 37.73 P
ATOM 3 OP1 C B 4 4.392 -12.340 52.270 1.00 36.81 O
ATOM 4 OP2 C B 4 6.497 -13.659 52.937 1.00 37.97 O
ATOM 5 O5' C B 4 4.468 -13.658 54.399 1.00 36.01 O
ATOM 6 C5' C B 4 3.050 -13.622 54.680 1.00 37.19 C
ATOM 7 C4' C B 4 2.763 -14.044 56.110 1.00 37.41 C
ATOM 8 O4' C B 4 3.225 -15.405 56.328 1.00 37.59 O
ATOM 9 C3' C B 4 3.425 -13.263 57.236 1.00 38.42 C
ATOM 10 O3' C B 4 2.736 -12.047 57.520 1.00 40.84 O
ATOM 11 C2' C B 4 3.290 -14.245 58.391 1.00 37.52 C
ATOM 12 O2' C B 4 1.962 -14.297 58.865 1.00 35.16 O
ATOM 13 C1' C B 4 3.591 -15.570 57.691 1.00 36.78 C
ATOM 14 N1 C B 4 5.018 -15.924 57.750 1.00 36.81 N
ATOM 15 C2 C B 4 5.535 -16.477 58.927 1.00 38.00 C
ATOM 16 O2 C B 4 4.778 -16.667 59.889 1.00 41.19 O
ATOM 17 N3 C B 4 6.847 -16.794 58.988 1.00 37.71 N
ATOM 18 C4 C B 4 7.632 -16.589 57.931 1.00 37.66 C
ATOM 19 N4 C B 4 8.921 -16.930 58.031 1.00 38.34 N
ATOM 20 C5 C B 4 7.132 -16.029 56.721 1.00 37.44 C
ATOM 21 C6 C B 4 5.832 -15.714 56.675 1.00 37.49 C
ATOM 22 P U B 5 3.553 -10.759 58.054 1.00 42.84 P
ATOM 23 OP1 U B 5 2.575 -9.641 58.098 1.00 43.18 O
ATOM 24 OP2 U B 5 4.799 -10.592 57.263 1.00 40.67 O
ATOM 25 O5' U B 5 3.970 -11.155 59.548 1.00 41.41 O
TER
Atoms:
OP1: (8.351,-16.182,48.490)
OP2: (9.775,-17.183,50.352)
C3': (4.981,-16.141,52.392)
C1': (4.646,-18.362,53.152)
C5': (5.923,-16.889,50.072)
O6: (8.512,-20.138,57.447)
O4': (5.018,-18.401,51.774)
C8: (7.099,-18.864,53.565)
C2: (5.005,-19.568,57.354)
C6: (7.406,-19.836,56.964)
C5: (7.088,-19.427,55.624)
C4: (5.774,-19.155,55.306)
P: (8.520,-17.183,49.563)
C4': (4.894,-17.069,51.186)
C2': (4.198,-16.925,53.446)
O2': (2.794,-16.849,53.265)
N1: (6.273,-19.875,57.768)
N2: (4.055,-19.630,58.301)
N3: (4.690,-19.213,56.109)
N7: (7.909,-19.240,54.520)
N9: (5.789,-18.780,53.969)
O5': (7.273,-17.067,50.568)
O3': (4.415,-14.850,52.138)
OP2: (9.775,-17.183,50.352)
C3': (4.981,-16.141,52.392)
C1': (4.646,-18.362,53.152)
C5': (5.923,-16.889,50.072)
O6: (8.512,-20.138,57.447)
O4': (5.018,-18.401,51.774)
C8: (7.099,-18.864,53.565)
C2: (5.005,-19.568,57.354)
C6: (7.406,-19.836,56.964)
C5: (7.088,-19.427,55.624)
C4: (5.774,-19.155,55.306)
P: (8.520,-17.183,49.563)
C4': (4.894,-17.069,51.186)
C2': (4.198,-16.925,53.446)
O2': (2.794,-16.849,53.265)
N1: (6.273,-19.875,57.768)
N2: (4.055,-19.630,58.301)
N3: (4.690,-19.213,56.109)
N7: (7.909,-19.240,54.520)
N9: (5.789,-18.780,53.969)
O5': (7.273,-17.067,50.568)
O3': (4.415,-14.850,52.138)
C2: (5.535,-16.477,58.927)
OP1: (4.392,-12.340,52.270)
OP2: (6.497,-13.659,52.937)
C4: (7.632,-16.589,57.931)
O5': (4.468,-13.658,54.399)
C3': (3.425,-13.263,57.236)
C1': (3.591,-15.570,57.691)
O4': (3.225,-15.405,56.328)
C5': (3.050,-13.622,54.680)
P: (5.007,-13.542,52.895)
O2: (4.778,-16.667,59.889)
C4': (2.763,-14.044,56.110)
C2': (3.290,-14.245,58.391)
O2': (1.962,-14.297,58.865)
N1: (5.018,-15.924,57.750)
N3: (6.847,-16.794,58.988)
N4: (8.921,-16.930,58.031)
C6: (5.832,-15.714,56.675)
C5: (7.132,-16.029,56.721)
O3': (2.736,-12.047,57.520)
OP1: (4.392,-12.340,52.270)
OP2: (6.497,-13.659,52.937)
C4: (7.632,-16.589,57.931)
O5': (4.468,-13.658,54.399)
C3': (3.425,-13.263,57.236)
C1': (3.591,-15.570,57.691)
O4': (3.225,-15.405,56.328)
C5': (3.050,-13.622,54.680)
P: (5.007,-13.542,52.895)
O2: (4.778,-16.667,59.889)
C4': (2.763,-14.044,56.110)
C2': (3.290,-14.245,58.391)
O2': (1.962,-14.297,58.865)
N1: (5.018,-15.924,57.750)
N3: (6.847,-16.794,58.988)
N4: (8.921,-16.930,58.031)
C6: (5.832,-15.714,56.675)
C5: (7.132,-16.029,56.721)
O3': (2.736,-12.047,57.520)
Image (generated by PyMOL):