Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M43:M40
Extra
PDB:
ATOM 1 O3' A A 42 -46.376 26.233 -24.689 1.00 55.02 O
ATOM 2 P G A 43 -46.712 26.497 -26.219 1.00 54.37 P
ATOM 3 OP1 G A 43 -45.979 27.667 -26.750 1.00 54.19 O
ATOM 4 OP2 G A 43 -48.169 26.683 -26.417 1.00 56.00 O
ATOM 5 O5' G A 43 -46.207 25.165 -26.936 1.00 53.80 O
ATOM 6 C5' G A 43 -44.827 25.110 -27.277 1.00 50.43 C
ATOM 7 C4' G A 43 -44.467 23.746 -27.806 1.00 49.25 C
ATOM 8 O4' G A 43 -44.918 22.715 -26.885 1.00 48.32 O
ATOM 9 C3' G A 43 -45.120 23.348 -29.105 1.00 47.80 C
ATOM 10 O3' G A 43 -44.472 23.937 -30.222 1.00 49.50 O
ATOM 11 C2' G A 43 -45.118 21.808 -29.073 1.00 48.60 C
ATOM 12 O2' G A 43 -43.910 21.244 -29.546 1.00 49.09 O
ATOM 13 C1' G A 43 -45.394 21.587 -27.574 1.00 50.79 C
ATOM 14 N9 G A 43 -46.840 21.508 -27.344 1.00 52.17 N
ATOM 15 C8 G A 43 -47.647 22.556 -27.000 1.00 51.61 C
ATOM 16 N7 G A 43 -48.909 22.245 -26.888 1.00 51.48 N
ATOM 17 C5 G A 43 -48.906 20.895 -27.153 1.00 50.48 C
ATOM 18 C6 G A 43 -49.996 19.992 -27.150 1.00 53.58 C
ATOM 19 O6 G A 43 -51.184 20.196 -26.913 1.00 55.35 O
ATOM 20 N1 G A 43 -49.622 18.702 -27.468 1.00 53.30 N
ATOM 21 C2 G A 43 -48.351 18.297 -27.801 1.00 53.56 C
ATOM 22 N2 G A 43 -48.227 17.018 -28.106 1.00 55.59 N
ATOM 23 N3 G A 43 -47.312 19.132 -27.819 1.00 51.11 N
ATOM 24 C4 G A 43 -47.653 20.408 -27.450 1.00 50.87 C
ATOM 25 P G A 44 -45.350 24.780 -31.270 1.00 49.41 P
ATOM 26 OP1 G A 44 -44.510 25.302 -32.374 1.00 47.71 O
ATOM 27 OP2 G A 44 -46.078 25.880 -30.587 1.00 51.56 O
ATOM 28 O5' G A 44 -46.407 23.689 -31.837 1.00 48.22 O
TER
ATOM 1 O3' U B 39 -59.883 30.099 -25.404 1.00 54.61 O
ATOM 2 P G B 40 -59.212 29.509 -24.102 1.00 52.33 P
ATOM 3 OP1 G B 40 -60.313 29.539 -23.100 1.00 47.94 O
ATOM 4 OP2 G B 40 -57.853 30.093 -24.000 1.00 49.32 O
ATOM 5 O5' G B 40 -58.942 27.971 -24.509 1.00 52.63 O
ATOM 6 C5' G B 40 -58.737 27.001 -23.554 1.00 51.98 C
ATOM 7 C4' G B 40 -57.605 26.146 -24.046 1.00 53.00 C
ATOM 8 O4' G B 40 -56.932 26.813 -25.102 1.00 52.33 O
ATOM 9 C3' G B 40 -56.414 25.971 -23.130 1.00 55.47 C
ATOM 10 O3' G B 40 -56.728 25.227 -21.924 1.00 56.98 O
ATOM 11 C2' G B 40 -55.461 25.266 -24.086 1.00 55.22 C
ATOM 12 O2' G B 40 -55.763 23.888 -24.261 1.00 57.42 O
ATOM 13 C1' G B 40 -55.723 26.102 -25.335 1.00 56.14 C
ATOM 14 N9 G B 40 -54.711 27.120 -25.530 1.00 55.76 N
ATOM 15 C8 G B 40 -54.972 28.459 -25.531 1.00 57.43 C
ATOM 16 N7 G B 40 -53.936 29.213 -25.718 1.00 57.14 N
ATOM 17 C5 G B 40 -52.922 28.285 -25.818 1.00 56.40 C
ATOM 18 C6 G B 40 -51.561 28.538 -26.026 1.00 56.87 C
ATOM 19 O6 G B 40 -51.051 29.676 -26.139 1.00 57.46 O
ATOM 20 N1 G B 40 -50.829 27.361 -26.113 1.00 55.97 N
ATOM 21 C2 G B 40 -51.374 26.103 -26.007 1.00 56.73 C
ATOM 22 N2 G B 40 -50.548 25.047 -26.120 1.00 56.75 N
ATOM 23 N3 G B 40 -52.659 25.881 -25.808 1.00 58.09 N
ATOM 24 C4 G B 40 -53.373 27.009 -25.725 1.00 55.56 C
ATOM 25 P U B 41 -56.862 26.046 -20.552 1.00 56.73 P
ATOM 26 OP1 U B 41 -57.478 25.050 -19.668 1.00 56.19 O
ATOM 27 OP2 U B 41 -57.368 27.444 -20.677 1.00 55.05 O
ATOM 28 O5' U B 41 -55.327 26.336 -20.212 1.00 59.79 O
TER
ATOM 2 P G A 43 -46.712 26.497 -26.219 1.00 54.37 P
ATOM 3 OP1 G A 43 -45.979 27.667 -26.750 1.00 54.19 O
ATOM 4 OP2 G A 43 -48.169 26.683 -26.417 1.00 56.00 O
ATOM 5 O5' G A 43 -46.207 25.165 -26.936 1.00 53.80 O
ATOM 6 C5' G A 43 -44.827 25.110 -27.277 1.00 50.43 C
ATOM 7 C4' G A 43 -44.467 23.746 -27.806 1.00 49.25 C
ATOM 8 O4' G A 43 -44.918 22.715 -26.885 1.00 48.32 O
ATOM 9 C3' G A 43 -45.120 23.348 -29.105 1.00 47.80 C
ATOM 10 O3' G A 43 -44.472 23.937 -30.222 1.00 49.50 O
ATOM 11 C2' G A 43 -45.118 21.808 -29.073 1.00 48.60 C
ATOM 12 O2' G A 43 -43.910 21.244 -29.546 1.00 49.09 O
ATOM 13 C1' G A 43 -45.394 21.587 -27.574 1.00 50.79 C
ATOM 14 N9 G A 43 -46.840 21.508 -27.344 1.00 52.17 N
ATOM 15 C8 G A 43 -47.647 22.556 -27.000 1.00 51.61 C
ATOM 16 N7 G A 43 -48.909 22.245 -26.888 1.00 51.48 N
ATOM 17 C5 G A 43 -48.906 20.895 -27.153 1.00 50.48 C
ATOM 18 C6 G A 43 -49.996 19.992 -27.150 1.00 53.58 C
ATOM 19 O6 G A 43 -51.184 20.196 -26.913 1.00 55.35 O
ATOM 20 N1 G A 43 -49.622 18.702 -27.468 1.00 53.30 N
ATOM 21 C2 G A 43 -48.351 18.297 -27.801 1.00 53.56 C
ATOM 22 N2 G A 43 -48.227 17.018 -28.106 1.00 55.59 N
ATOM 23 N3 G A 43 -47.312 19.132 -27.819 1.00 51.11 N
ATOM 24 C4 G A 43 -47.653 20.408 -27.450 1.00 50.87 C
ATOM 25 P G A 44 -45.350 24.780 -31.270 1.00 49.41 P
ATOM 26 OP1 G A 44 -44.510 25.302 -32.374 1.00 47.71 O
ATOM 27 OP2 G A 44 -46.078 25.880 -30.587 1.00 51.56 O
ATOM 28 O5' G A 44 -46.407 23.689 -31.837 1.00 48.22 O
TER
ATOM 1 O3' U B 39 -59.883 30.099 -25.404 1.00 54.61 O
ATOM 2 P G B 40 -59.212 29.509 -24.102 1.00 52.33 P
ATOM 3 OP1 G B 40 -60.313 29.539 -23.100 1.00 47.94 O
ATOM 4 OP2 G B 40 -57.853 30.093 -24.000 1.00 49.32 O
ATOM 5 O5' G B 40 -58.942 27.971 -24.509 1.00 52.63 O
ATOM 6 C5' G B 40 -58.737 27.001 -23.554 1.00 51.98 C
ATOM 7 C4' G B 40 -57.605 26.146 -24.046 1.00 53.00 C
ATOM 8 O4' G B 40 -56.932 26.813 -25.102 1.00 52.33 O
ATOM 9 C3' G B 40 -56.414 25.971 -23.130 1.00 55.47 C
ATOM 10 O3' G B 40 -56.728 25.227 -21.924 1.00 56.98 O
ATOM 11 C2' G B 40 -55.461 25.266 -24.086 1.00 55.22 C
ATOM 12 O2' G B 40 -55.763 23.888 -24.261 1.00 57.42 O
ATOM 13 C1' G B 40 -55.723 26.102 -25.335 1.00 56.14 C
ATOM 14 N9 G B 40 -54.711 27.120 -25.530 1.00 55.76 N
ATOM 15 C8 G B 40 -54.972 28.459 -25.531 1.00 57.43 C
ATOM 16 N7 G B 40 -53.936 29.213 -25.718 1.00 57.14 N
ATOM 17 C5 G B 40 -52.922 28.285 -25.818 1.00 56.40 C
ATOM 18 C6 G B 40 -51.561 28.538 -26.026 1.00 56.87 C
ATOM 19 O6 G B 40 -51.051 29.676 -26.139 1.00 57.46 O
ATOM 20 N1 G B 40 -50.829 27.361 -26.113 1.00 55.97 N
ATOM 21 C2 G B 40 -51.374 26.103 -26.007 1.00 56.73 C
ATOM 22 N2 G B 40 -50.548 25.047 -26.120 1.00 56.75 N
ATOM 23 N3 G B 40 -52.659 25.881 -25.808 1.00 58.09 N
ATOM 24 C4 G B 40 -53.373 27.009 -25.725 1.00 55.56 C
ATOM 25 P U B 41 -56.862 26.046 -20.552 1.00 56.73 P
ATOM 26 OP1 U B 41 -57.478 25.050 -19.668 1.00 56.19 O
ATOM 27 OP2 U B 41 -57.368 27.444 -20.677 1.00 55.05 O
ATOM 28 O5' U B 41 -55.327 26.336 -20.212 1.00 59.79 O
TER
Atoms:
OP1: (-45.979,27.667,-26.750)
OP2: (-48.169,26.683,-26.417)
C3': (-45.120,23.348,-29.105)
C1': (-45.394,21.587,-27.574)
C5': (-44.827,25.110,-27.277)
O6: (-51.184,20.196,-26.913)
O4': (-44.918,22.715,-26.885)
C8: (-47.647,22.556,-27.000)
C2: (-48.351,18.297,-27.801)
C6: (-49.996,19.992,-27.150)
C5: (-48.906,20.895,-27.153)
C4: (-47.653,20.408,-27.450)
P: (-46.712,26.497,-26.219)
C4': (-44.467,23.746,-27.806)
C2': (-45.118,21.808,-29.073)
O2': (-43.910,21.244,-29.546)
N1: (-49.622,18.702,-27.468)
N2: (-48.227,17.018,-28.106)
N3: (-47.312,19.132,-27.819)
N7: (-48.909,22.245,-26.888)
N9: (-46.840,21.508,-27.344)
O5': (-46.207,25.165,-26.936)
O3': (-44.472,23.937,-30.222)
OP2: (-48.169,26.683,-26.417)
C3': (-45.120,23.348,-29.105)
C1': (-45.394,21.587,-27.574)
C5': (-44.827,25.110,-27.277)
O6: (-51.184,20.196,-26.913)
O4': (-44.918,22.715,-26.885)
C8: (-47.647,22.556,-27.000)
C2: (-48.351,18.297,-27.801)
C6: (-49.996,19.992,-27.150)
C5: (-48.906,20.895,-27.153)
C4: (-47.653,20.408,-27.450)
P: (-46.712,26.497,-26.219)
C4': (-44.467,23.746,-27.806)
C2': (-45.118,21.808,-29.073)
O2': (-43.910,21.244,-29.546)
N1: (-49.622,18.702,-27.468)
N2: (-48.227,17.018,-28.106)
N3: (-47.312,19.132,-27.819)
N7: (-48.909,22.245,-26.888)
N9: (-46.840,21.508,-27.344)
O5': (-46.207,25.165,-26.936)
O3': (-44.472,23.937,-30.222)
OP1: (-60.313,29.539,-23.100)
OP2: (-57.853,30.093,-24.000)
C3': (-56.414,25.971,-23.130)
C1': (-55.723,26.102,-25.335)
C5': (-58.737,27.001,-23.554)
O6: (-51.051,29.676,-26.139)
O4': (-56.932,26.813,-25.102)
C8: (-54.972,28.459,-25.531)
C2: (-51.374,26.103,-26.007)
C6: (-51.561,28.538,-26.026)
C5: (-52.922,28.285,-25.818)
C4: (-53.373,27.009,-25.725)
P: (-59.212,29.509,-24.102)
C4': (-57.605,26.146,-24.046)
C2': (-55.461,25.266,-24.086)
O2': (-55.763,23.888,-24.261)
N1: (-50.829,27.361,-26.113)
N2: (-50.548,25.047,-26.120)
N3: (-52.659,25.881,-25.808)
N7: (-53.936,29.213,-25.718)
N9: (-54.711,27.120,-25.530)
O5': (-58.942,27.971,-24.509)
O3': (-56.728,25.227,-21.924)
OP2: (-57.853,30.093,-24.000)
C3': (-56.414,25.971,-23.130)
C1': (-55.723,26.102,-25.335)
C5': (-58.737,27.001,-23.554)
O6: (-51.051,29.676,-26.139)
O4': (-56.932,26.813,-25.102)
C8: (-54.972,28.459,-25.531)
C2: (-51.374,26.103,-26.007)
C6: (-51.561,28.538,-26.026)
C5: (-52.922,28.285,-25.818)
C4: (-53.373,27.009,-25.725)
P: (-59.212,29.509,-24.102)
C4': (-57.605,26.146,-24.046)
C2': (-55.461,25.266,-24.086)
O2': (-55.763,23.888,-24.261)
N1: (-50.829,27.361,-26.113)
N2: (-50.548,25.047,-26.120)
N3: (-52.659,25.881,-25.808)
N7: (-53.936,29.213,-25.718)
N9: (-54.711,27.120,-25.530)
O5': (-58.942,27.971,-24.509)
O3': (-56.728,25.227,-21.924)
Image (generated by PyMOL):