Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X15:X25
Extra
PDB:
ATOM 1 O3' C A 14 -2.234 -19.029 18.918 1.00 41.11 O
ATOM 2 P U A 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 3 OP1 U A 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 4 OP2 U A 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 5 O5' U A 15 -0.401 -17.404 18.364 1.00 40.67 O
ATOM 6 C5' U A 15 0.793 -18.180 18.405 1.00 40.13 C
ATOM 7 C4' U A 15 1.835 -17.659 17.430 1.00 39.39 C
ATOM 8 O4' U A 15 1.228 -17.441 16.130 1.00 39.71 O
ATOM 9 C3' U A 15 2.443 -16.308 17.775 1.00 38.94 C
ATOM 10 O3' U A 15 3.477 -16.437 18.741 1.00 37.63 O
ATOM 11 C2' U A 15 2.982 -15.886 16.415 1.00 39.04 C
ATOM 12 O2' U A 15 4.173 -16.566 16.068 1.00 39.71 O
ATOM 13 C1' U A 15 1.837 -16.326 15.504 1.00 39.13 C
ATOM 14 N1 U A 15 0.811 -15.258 15.295 1.00 38.64 N
ATOM 15 C2 U A 15 1.164 -14.132 14.583 1.00 38.37 C
ATOM 16 O2 U A 15 2.274 -13.961 14.108 1.00 37.75 O
ATOM 17 N3 U A 15 0.165 -13.201 14.446 1.00 37.93 N
ATOM 18 C4 U A 15 -1.127 -13.278 14.931 1.00 38.37 C
ATOM 19 O4 U A 15 -1.906 -12.353 14.719 1.00 38.04 O
ATOM 20 C5 U A 15 -1.424 -14.485 15.665 1.00 38.52 C
ATOM 21 C6 U A 15 -0.463 -15.407 15.814 1.00 38.97 C
ATOM 22 P U A 16 3.664 -15.295 19.846 1.00 37.51 P
ATOM 23 OP1 U A 16 4.568 -15.814 20.895 1.00 37.69 O
ATOM 24 OP2 U A 16 2.322 -14.790 20.213 1.00 36.56 O
ATOM 25 O5' U A 16 4.418 -14.134 19.046 1.00 37.50 O
TER
ATOM 1 O3' A B 24 0.326 -2.681 8.945 1.00 37.36 O
ATOM 2 P A B 25 0.077 -3.934 7.981 1.00 36.97 P
ATOM 3 OP1 A B 25 0.363 -3.502 6.597 1.00 38.10 O
ATOM 4 OP2 A B 25 -1.234 -4.532 8.305 1.00 37.66 O
ATOM 5 O5' A B 25 1.212 -4.962 8.441 1.00 37.13 O
ATOM 6 C5' A B 25 2.581 -4.669 8.185 1.00 35.03 C
ATOM 7 C4' A B 25 3.469 -5.730 8.805 1.00 34.57 C
ATOM 8 O4' A B 25 3.229 -5.815 10.234 1.00 33.92 O
ATOM 9 C3' A B 25 3.217 -7.145 8.307 1.00 34.22 C
ATOM 10 O3' A B 25 3.888 -7.353 7.074 1.00 33.67 O
ATOM 11 C2' A B 25 3.833 -7.957 9.440 1.00 34.08 C
ATOM 12 O2' A B 25 5.247 -7.985 9.384 1.00 34.50 O
ATOM 13 C1' A B 25 3.368 -7.161 10.656 1.00 33.27 C
ATOM 14 N9 A B 25 2.087 -7.623 11.188 1.00 32.81 N
ATOM 15 C8 A B 25 0.886 -6.977 11.116 1.00 32.34 C
ATOM 16 N7 A B 25 -0.104 -7.633 11.673 1.00 32.31 N
ATOM 17 C5 A B 25 0.488 -8.791 12.146 1.00 31.76 C
ATOM 18 C6 A B 25 -0.029 -9.902 12.838 1.00 31.43 C
ATOM 19 N6 A B 25 -1.317 -10.012 13.183 1.00 31.21 N
ATOM 20 N1 A B 25 0.826 -10.895 13.160 1.00 31.35 N
ATOM 21 C2 A B 25 2.114 -10.776 12.809 1.00 32.31 C
ATOM 22 N3 A B 25 2.717 -9.778 12.161 1.00 32.50 N
ATOM 23 C4 A B 25 1.839 -8.807 11.852 1.00 32.82 C
ATOM 24 P G B 26 3.179 -8.169 5.895 1.00 34.17 P
ATOM 25 OP1 G B 26 4.149 -8.277 4.782 1.00 33.46 O
ATOM 26 OP2 G B 26 1.841 -7.588 5.653 1.00 33.54 O
ATOM 27 O5' G B 26 2.969 -9.617 6.542 1.00 31.73 O
TER
ATOM 2 P U A 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 3 OP1 U A 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 4 OP2 U A 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 5 O5' U A 15 -0.401 -17.404 18.364 1.00 40.67 O
ATOM 6 C5' U A 15 0.793 -18.180 18.405 1.00 40.13 C
ATOM 7 C4' U A 15 1.835 -17.659 17.430 1.00 39.39 C
ATOM 8 O4' U A 15 1.228 -17.441 16.130 1.00 39.71 O
ATOM 9 C3' U A 15 2.443 -16.308 17.775 1.00 38.94 C
ATOM 10 O3' U A 15 3.477 -16.437 18.741 1.00 37.63 O
ATOM 11 C2' U A 15 2.982 -15.886 16.415 1.00 39.04 C
ATOM 12 O2' U A 15 4.173 -16.566 16.068 1.00 39.71 O
ATOM 13 C1' U A 15 1.837 -16.326 15.504 1.00 39.13 C
ATOM 14 N1 U A 15 0.811 -15.258 15.295 1.00 38.64 N
ATOM 15 C2 U A 15 1.164 -14.132 14.583 1.00 38.37 C
ATOM 16 O2 U A 15 2.274 -13.961 14.108 1.00 37.75 O
ATOM 17 N3 U A 15 0.165 -13.201 14.446 1.00 37.93 N
ATOM 18 C4 U A 15 -1.127 -13.278 14.931 1.00 38.37 C
ATOM 19 O4 U A 15 -1.906 -12.353 14.719 1.00 38.04 O
ATOM 20 C5 U A 15 -1.424 -14.485 15.665 1.00 38.52 C
ATOM 21 C6 U A 15 -0.463 -15.407 15.814 1.00 38.97 C
ATOM 22 P U A 16 3.664 -15.295 19.846 1.00 37.51 P
ATOM 23 OP1 U A 16 4.568 -15.814 20.895 1.00 37.69 O
ATOM 24 OP2 U A 16 2.322 -14.790 20.213 1.00 36.56 O
ATOM 25 O5' U A 16 4.418 -14.134 19.046 1.00 37.50 O
TER
ATOM 1 O3' A B 24 0.326 -2.681 8.945 1.00 37.36 O
ATOM 2 P A B 25 0.077 -3.934 7.981 1.00 36.97 P
ATOM 3 OP1 A B 25 0.363 -3.502 6.597 1.00 38.10 O
ATOM 4 OP2 A B 25 -1.234 -4.532 8.305 1.00 37.66 O
ATOM 5 O5' A B 25 1.212 -4.962 8.441 1.00 37.13 O
ATOM 6 C5' A B 25 2.581 -4.669 8.185 1.00 35.03 C
ATOM 7 C4' A B 25 3.469 -5.730 8.805 1.00 34.57 C
ATOM 8 O4' A B 25 3.229 -5.815 10.234 1.00 33.92 O
ATOM 9 C3' A B 25 3.217 -7.145 8.307 1.00 34.22 C
ATOM 10 O3' A B 25 3.888 -7.353 7.074 1.00 33.67 O
ATOM 11 C2' A B 25 3.833 -7.957 9.440 1.00 34.08 C
ATOM 12 O2' A B 25 5.247 -7.985 9.384 1.00 34.50 O
ATOM 13 C1' A B 25 3.368 -7.161 10.656 1.00 33.27 C
ATOM 14 N9 A B 25 2.087 -7.623 11.188 1.00 32.81 N
ATOM 15 C8 A B 25 0.886 -6.977 11.116 1.00 32.34 C
ATOM 16 N7 A B 25 -0.104 -7.633 11.673 1.00 32.31 N
ATOM 17 C5 A B 25 0.488 -8.791 12.146 1.00 31.76 C
ATOM 18 C6 A B 25 -0.029 -9.902 12.838 1.00 31.43 C
ATOM 19 N6 A B 25 -1.317 -10.012 13.183 1.00 31.21 N
ATOM 20 N1 A B 25 0.826 -10.895 13.160 1.00 31.35 N
ATOM 21 C2 A B 25 2.114 -10.776 12.809 1.00 32.31 C
ATOM 22 N3 A B 25 2.717 -9.778 12.161 1.00 32.50 N
ATOM 23 C4 A B 25 1.839 -8.807 11.852 1.00 32.82 C
ATOM 24 P G B 26 3.179 -8.169 5.895 1.00 34.17 P
ATOM 25 OP1 G B 26 4.149 -8.277 4.782 1.00 33.46 O
ATOM 26 OP2 G B 26 1.841 -7.588 5.653 1.00 33.54 O
ATOM 27 O5' G B 26 2.969 -9.617 6.542 1.00 31.73 O
TER
Atoms:
C4: (-1.127,-13.278,14.931)
N3: (0.165,-13.201,14.446)
OP1: (-0.975,-17.919,20.759)
OP2: (-2.565,-16.574,19.282)
C2: (1.164,-14.132,14.583)
C1': (1.837,-16.326,15.504)
C3': (2.443,-16.308,17.775)
O5': (-0.401,-17.404,18.364)
O4': (1.228,-17.441,16.130)
C5': (0.793,-18.180,18.405)
P: (-1.571,-17.661,19.429)
C4': (1.835,-17.659,17.430)
C2': (2.982,-15.886,16.415)
O2': (4.173,-16.566,16.068)
N1: (0.811,-15.258,15.295)
O4: (-1.906,-12.353,14.719)
O2: (2.274,-13.961,14.108)
C6: (-0.463,-15.407,15.814)
C5: (-1.424,-14.485,15.665)
O3': (3.477,-16.437,18.741)
N3: (0.165,-13.201,14.446)
OP1: (-0.975,-17.919,20.759)
OP2: (-2.565,-16.574,19.282)
C2: (1.164,-14.132,14.583)
C1': (1.837,-16.326,15.504)
C3': (2.443,-16.308,17.775)
O5': (-0.401,-17.404,18.364)
O4': (1.228,-17.441,16.130)
C5': (0.793,-18.180,18.405)
P: (-1.571,-17.661,19.429)
C4': (1.835,-17.659,17.430)
C2': (2.982,-15.886,16.415)
O2': (4.173,-16.566,16.068)
N1: (0.811,-15.258,15.295)
O4: (-1.906,-12.353,14.719)
O2: (2.274,-13.961,14.108)
C6: (-0.463,-15.407,15.814)
C5: (-1.424,-14.485,15.665)
O3': (3.477,-16.437,18.741)
OP1: (0.363,-3.502,6.597)
OP2: (-1.234,-4.532,8.305)
C3': (3.217,-7.145,8.307)
C1': (3.368,-7.161,10.656)
C5': (2.581,-4.669,8.185)
O4': (3.229,-5.815,10.234)
C8: (0.886,-6.977,11.116)
O2': (5.247,-7.985,9.384)
C6: (-0.029,-9.902,12.838)
C5: (0.488,-8.791,12.146)
C4: (1.839,-8.807,11.852)
P: (0.077,-3.934,7.981)
C4': (3.469,-5.730,8.805)
C2': (3.833,-7.957,9.440)
C2: (2.114,-10.776,12.809)
N1: (0.826,-10.895,13.160)
N3: (2.717,-9.778,12.161)
N6: (-1.317,-10.012,13.183)
N7: (-0.104,-7.633,11.673)
N9: (2.087,-7.623,11.188)
O5': (1.212,-4.962,8.441)
O3': (3.888,-7.353,7.074)
OP2: (-1.234,-4.532,8.305)
C3': (3.217,-7.145,8.307)
C1': (3.368,-7.161,10.656)
C5': (2.581,-4.669,8.185)
O4': (3.229,-5.815,10.234)
C8: (0.886,-6.977,11.116)
O2': (5.247,-7.985,9.384)
C6: (-0.029,-9.902,12.838)
C5: (0.488,-8.791,12.146)
C4: (1.839,-8.807,11.852)
P: (0.077,-3.934,7.981)
C4': (3.469,-5.730,8.805)
C2': (3.833,-7.957,9.440)
C2: (2.114,-10.776,12.809)
N1: (0.826,-10.895,13.160)
N3: (2.717,-9.778,12.161)
N6: (-1.317,-10.012,13.183)
N7: (-0.104,-7.633,11.673)
N9: (2.087,-7.623,11.188)
O5': (1.212,-4.962,8.441)
O3': (3.888,-7.353,7.074)
Image (generated by PyMOL):