Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12381:12401
Extra
PDB:
ATOM 1 O3' A A2380 30.517 -41.087 60.580 1.00 43.04 O
ATOM 2 P U A2381 30.811 -41.151 59.014 1.00 40.22 P
ATOM 3 OP1 U A2381 32.209 -41.693 58.864 1.00 40.28 O
ATOM 4 OP2 U A2381 30.482 -39.816 58.440 1.00 40.01 O
ATOM 5 O5' U A2381 29.754 -42.201 58.522 1.00 40.52 O
ATOM 6 C5' U A2381 29.160 -42.119 57.253 1.00 40.63 C
ATOM 7 C4' U A2381 27.984 -43.033 57.211 1.00 40.89 C
ATOM 8 O4' U A2381 26.857 -42.418 57.885 1.00 40.78 O
ATOM 9 C3' U A2381 27.454 -43.439 55.854 1.00 41.12 C
ATOM 10 O3' U A2381 28.196 -44.505 55.331 1.00 41.35 O
ATOM 11 C2' U A2381 26.081 -43.882 56.228 1.00 41.27 C
ATOM 12 O2' U A2381 26.199 -45.132 56.890 1.00 41.49 O
ATOM 13 C1' U A2381 25.682 -42.825 57.269 1.00 40.99 C
ATOM 14 N1 U A2381 25.064 -41.634 56.663 1.00 40.84 N
ATOM 15 C2 U A2381 23.815 -41.771 56.173 1.00 41.00 C
ATOM 16 O2 U A2381 23.201 -42.820 56.193 1.00 41.27 O
ATOM 17 N3 U A2381 23.304 -40.654 55.603 1.00 40.87 N
ATOM 18 C4 U A2381 23.864 -39.412 55.496 1.00 40.59 C
ATOM 19 O4 U A2381 23.181 -38.545 54.937 1.00 40.54 O
ATOM 20 C5 U A2381 25.164 -39.315 56.062 1.00 40.42 C
ATOM 21 C6 U A2381 25.695 -40.413 56.613 1.00 40.55 C
ATOM 22 P C A2382 28.720 -44.509 53.825 1.00 39.16 P
ATOM 23 OP1 C A2382 29.715 -45.598 53.723 1.00 39.36 O
ATOM 24 OP2 C A2382 29.130 -43.139 53.507 1.00 38.86 O
ATOM 25 O5' C A2382 27.438 -44.911 52.998 1.00 39.41 O
TER
ATOM 1 O3' G B2400 13.080 -40.413 49.238 1.00 42.59 O
ATOM 2 P A B2401 12.843 -40.250 50.832 1.00 42.78 P
ATOM 3 OP1 A B2401 11.377 -40.490 51.064 1.00 43.00 O
ATOM 4 OP2 A B2401 13.450 -38.921 51.247 1.00 42.40 O
ATOM 5 O5' A B2401 13.686 -41.455 51.439 1.00 42.83 O
ATOM 6 C5' A B2401 13.754 -42.698 50.764 1.00 43.16 C
ATOM 7 C4' A B2401 14.898 -43.541 51.268 1.00 43.13 C
ATOM 8 O4' A B2401 16.158 -43.106 50.684 1.00 42.96 O
ATOM 9 C3' A B2401 15.176 -43.495 52.757 1.00 42.91 C
ATOM 10 O3' A B2401 14.247 -44.253 53.508 1.00 43.11 O
ATOM 11 C2' A B2401 16.578 -44.051 52.788 1.00 42.86 C
ATOM 12 O2' A B2401 16.559 -45.442 52.487 1.00 43.21 O
ATOM 13 C1' A B2401 17.188 -43.319 51.611 1.00 42.77 C
ATOM 14 N9 A B2401 17.734 -42.013 52.016 1.00 42.39 N
ATOM 15 C8 A B2401 17.262 -40.783 51.707 1.00 42.23 C
ATOM 16 N7 A B2401 18.023 -39.853 52.237 1.00 41.90 N
ATOM 17 C5 A B2401 19.025 -40.491 52.921 1.00 41.84 C
ATOM 18 C6 A B2401 20.106 -40.061 53.655 1.00 41.57 C
ATOM 19 N6 A B2401 20.404 -38.792 53.864 1.00 41.28 N
ATOM 20 N1 A B2401 20.937 -40.963 54.180 1.00 41.61 N
ATOM 21 C2 A B2401 20.700 -42.244 54.004 1.00 41.91 C
ATOM 22 N3 A B2401 19.705 -42.761 53.333 1.00 42.19 N
ATOM 23 C4 A B2401 18.886 -41.824 52.794 1.00 42.14 C
ATOM 24 P U B2402 14.342 -44.340 55.119 1.00 47.27 P
ATOM 25 OP1 U B2402 13.388 -45.395 55.543 1.00 47.59 O
ATOM 26 OP2 U B2402 14.186 -42.962 55.649 1.00 46.95 O
ATOM 27 O5' U B2402 15.813 -44.832 55.379 1.00 47.18 O
TER
ATOM 2 P U A2381 30.811 -41.151 59.014 1.00 40.22 P
ATOM 3 OP1 U A2381 32.209 -41.693 58.864 1.00 40.28 O
ATOM 4 OP2 U A2381 30.482 -39.816 58.440 1.00 40.01 O
ATOM 5 O5' U A2381 29.754 -42.201 58.522 1.00 40.52 O
ATOM 6 C5' U A2381 29.160 -42.119 57.253 1.00 40.63 C
ATOM 7 C4' U A2381 27.984 -43.033 57.211 1.00 40.89 C
ATOM 8 O4' U A2381 26.857 -42.418 57.885 1.00 40.78 O
ATOM 9 C3' U A2381 27.454 -43.439 55.854 1.00 41.12 C
ATOM 10 O3' U A2381 28.196 -44.505 55.331 1.00 41.35 O
ATOM 11 C2' U A2381 26.081 -43.882 56.228 1.00 41.27 C
ATOM 12 O2' U A2381 26.199 -45.132 56.890 1.00 41.49 O
ATOM 13 C1' U A2381 25.682 -42.825 57.269 1.00 40.99 C
ATOM 14 N1 U A2381 25.064 -41.634 56.663 1.00 40.84 N
ATOM 15 C2 U A2381 23.815 -41.771 56.173 1.00 41.00 C
ATOM 16 O2 U A2381 23.201 -42.820 56.193 1.00 41.27 O
ATOM 17 N3 U A2381 23.304 -40.654 55.603 1.00 40.87 N
ATOM 18 C4 U A2381 23.864 -39.412 55.496 1.00 40.59 C
ATOM 19 O4 U A2381 23.181 -38.545 54.937 1.00 40.54 O
ATOM 20 C5 U A2381 25.164 -39.315 56.062 1.00 40.42 C
ATOM 21 C6 U A2381 25.695 -40.413 56.613 1.00 40.55 C
ATOM 22 P C A2382 28.720 -44.509 53.825 1.00 39.16 P
ATOM 23 OP1 C A2382 29.715 -45.598 53.723 1.00 39.36 O
ATOM 24 OP2 C A2382 29.130 -43.139 53.507 1.00 38.86 O
ATOM 25 O5' C A2382 27.438 -44.911 52.998 1.00 39.41 O
TER
ATOM 1 O3' G B2400 13.080 -40.413 49.238 1.00 42.59 O
ATOM 2 P A B2401 12.843 -40.250 50.832 1.00 42.78 P
ATOM 3 OP1 A B2401 11.377 -40.490 51.064 1.00 43.00 O
ATOM 4 OP2 A B2401 13.450 -38.921 51.247 1.00 42.40 O
ATOM 5 O5' A B2401 13.686 -41.455 51.439 1.00 42.83 O
ATOM 6 C5' A B2401 13.754 -42.698 50.764 1.00 43.16 C
ATOM 7 C4' A B2401 14.898 -43.541 51.268 1.00 43.13 C
ATOM 8 O4' A B2401 16.158 -43.106 50.684 1.00 42.96 O
ATOM 9 C3' A B2401 15.176 -43.495 52.757 1.00 42.91 C
ATOM 10 O3' A B2401 14.247 -44.253 53.508 1.00 43.11 O
ATOM 11 C2' A B2401 16.578 -44.051 52.788 1.00 42.86 C
ATOM 12 O2' A B2401 16.559 -45.442 52.487 1.00 43.21 O
ATOM 13 C1' A B2401 17.188 -43.319 51.611 1.00 42.77 C
ATOM 14 N9 A B2401 17.734 -42.013 52.016 1.00 42.39 N
ATOM 15 C8 A B2401 17.262 -40.783 51.707 1.00 42.23 C
ATOM 16 N7 A B2401 18.023 -39.853 52.237 1.00 41.90 N
ATOM 17 C5 A B2401 19.025 -40.491 52.921 1.00 41.84 C
ATOM 18 C6 A B2401 20.106 -40.061 53.655 1.00 41.57 C
ATOM 19 N6 A B2401 20.404 -38.792 53.864 1.00 41.28 N
ATOM 20 N1 A B2401 20.937 -40.963 54.180 1.00 41.61 N
ATOM 21 C2 A B2401 20.700 -42.244 54.004 1.00 41.91 C
ATOM 22 N3 A B2401 19.705 -42.761 53.333 1.00 42.19 N
ATOM 23 C4 A B2401 18.886 -41.824 52.794 1.00 42.14 C
ATOM 24 P U B2402 14.342 -44.340 55.119 1.00 47.27 P
ATOM 25 OP1 U B2402 13.388 -45.395 55.543 1.00 47.59 O
ATOM 26 OP2 U B2402 14.186 -42.962 55.649 1.00 46.95 O
ATOM 27 O5' U B2402 15.813 -44.832 55.379 1.00 47.18 O
TER
Atoms:
C4: (23.864,-39.412,55.496)
N3: (23.304,-40.654,55.603)
OP1: (32.209,-41.693,58.864)
OP2: (30.482,-39.816,58.440)
C2: (23.815,-41.771,56.173)
C1': (25.682,-42.825,57.269)
C3': (27.454,-43.439,55.854)
O5': (29.754,-42.201,58.522)
O4': (26.857,-42.418,57.885)
C5': (29.160,-42.119,57.253)
P: (30.811,-41.151,59.014)
C4': (27.984,-43.033,57.211)
C2': (26.081,-43.882,56.228)
O2': (26.199,-45.132,56.890)
N1: (25.064,-41.634,56.663)
O4: (23.181,-38.545,54.937)
O2: (23.201,-42.820,56.193)
C6: (25.695,-40.413,56.613)
C5: (25.164,-39.315,56.062)
O3': (28.196,-44.505,55.331)
N3: (23.304,-40.654,55.603)
OP1: (32.209,-41.693,58.864)
OP2: (30.482,-39.816,58.440)
C2: (23.815,-41.771,56.173)
C1': (25.682,-42.825,57.269)
C3': (27.454,-43.439,55.854)
O5': (29.754,-42.201,58.522)
O4': (26.857,-42.418,57.885)
C5': (29.160,-42.119,57.253)
P: (30.811,-41.151,59.014)
C4': (27.984,-43.033,57.211)
C2': (26.081,-43.882,56.228)
O2': (26.199,-45.132,56.890)
N1: (25.064,-41.634,56.663)
O4: (23.181,-38.545,54.937)
O2: (23.201,-42.820,56.193)
C6: (25.695,-40.413,56.613)
C5: (25.164,-39.315,56.062)
O3': (28.196,-44.505,55.331)
OP1: (11.377,-40.490,51.064)
OP2: (13.450,-38.921,51.247)
C3': (15.176,-43.495,52.757)
C1': (17.188,-43.319,51.611)
C5': (13.754,-42.698,50.764)
O4': (16.158,-43.106,50.684)
C8: (17.262,-40.783,51.707)
O2': (16.559,-45.442,52.487)
C6: (20.106,-40.061,53.655)
C5: (19.025,-40.491,52.921)
C4: (18.886,-41.824,52.794)
P: (12.843,-40.250,50.832)
C4': (14.898,-43.541,51.268)
C2': (16.578,-44.051,52.788)
C2: (20.700,-42.244,54.004)
N1: (20.937,-40.963,54.180)
N3: (19.705,-42.761,53.333)
N6: (20.404,-38.792,53.864)
N7: (18.023,-39.853,52.237)
N9: (17.734,-42.013,52.016)
O5': (13.686,-41.455,51.439)
O3': (14.247,-44.253,53.508)
OP2: (13.450,-38.921,51.247)
C3': (15.176,-43.495,52.757)
C1': (17.188,-43.319,51.611)
C5': (13.754,-42.698,50.764)
O4': (16.158,-43.106,50.684)
C8: (17.262,-40.783,51.707)
O2': (16.559,-45.442,52.487)
C6: (20.106,-40.061,53.655)
C5: (19.025,-40.491,52.921)
C4: (18.886,-41.824,52.794)
P: (12.843,-40.250,50.832)
C4': (14.898,-43.541,51.268)
C2': (16.578,-44.051,52.788)
C2: (20.700,-42.244,54.004)
N1: (20.937,-40.963,54.180)
N3: (19.705,-42.761,53.333)
N6: (20.404,-38.792,53.864)
N7: (18.023,-39.853,52.237)
N9: (17.734,-42.013,52.016)
O5': (13.686,-41.455,51.439)
O3': (14.247,-44.253,53.508)
Image (generated by PyMOL):