Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1SDR:C8:D3
Extra
PDB:
ATOM 1 O3' G A 7 -5.864 0.146 15.214 1.00 20.65 O
ATOM 2 P U A 8 -6.491 1.251 16.243 1.00 17.11 P
ATOM 3 OP1 U A 8 -7.814 1.608 15.683 1.00 23.06 O
ATOM 4 OP2 U A 8 -5.478 2.307 16.433 1.00 19.26 O
ATOM 5 O5' U A 8 -6.666 0.643 17.701 1.00 15.41 O
ATOM 6 C5' U A 8 -7.747 -0.196 18.101 1.00 15.31 C
ATOM 7 C4' U A 8 -7.386 -0.756 19.464 1.00 14.49 C
ATOM 8 O4' U A 8 -6.004 -1.141 19.317 1.00 12.61 O
ATOM 9 C3' U A 8 -7.265 0.293 20.534 1.00 16.74 C
ATOM 10 O3' U A 8 -8.416 0.844 21.230 1.00 20.45 O
ATOM 11 C2' U A 8 -6.316 -0.375 21.491 1.00 16.23 C
ATOM 12 O2' U A 8 -6.841 -1.308 22.425 1.00 22.66 O
ATOM 13 C1' U A 8 -5.333 -1.075 20.591 1.00 13.54 C
ATOM 14 N1 U A 8 -4.088 -0.280 20.663 1.00 9.01 N
ATOM 15 C2 U A 8 -3.411 -0.319 21.860 1.00 11.14 C
ATOM 16 O2 U A 8 -3.767 -0.980 22.836 1.00 14.27 O
ATOM 17 N3 U A 8 -2.266 0.431 21.941 1.00 12.96 N
ATOM 18 C4 U A 8 -1.757 1.223 20.946 1.00 13.13 C
ATOM 19 O4 U A 8 -0.717 1.831 21.181 1.00 15.28 O
ATOM 20 C5 U A 8 -2.523 1.221 19.718 1.00 8.16 C
ATOM 21 C6 U A 8 -3.642 0.482 19.619 1.00 8.10 C
ATOM 22 P G A 9 -8.794 2.441 21.242 1.00 14.23 P
ATOM 23 OP1 G A 9 -9.658 2.644 20.058 1.00 14.73 O
ATOM 24 OP2 G A 9 -7.582 3.283 21.368 1.00 16.67 O
ATOM 25 O5' G A 9 -9.644 2.663 22.554 1.00 12.29 O
TER
ATOM 1 O3' C B 2 5.727 0.568 29.742 1.00 21.60 O
ATOM 2 P A B 3 6.182 -0.848 29.142 1.00 15.86 P
ATOM 3 OP1 A B 3 6.906 -1.486 30.244 1.00 11.92 O
ATOM 4 OP2 A B 3 6.870 -0.646 27.843 1.00 20.15 O
ATOM 5 O5' A B 3 4.764 -1.605 28.940 1.00 18.39 O
ATOM 6 C5' A B 3 4.146 -2.007 30.182 1.00 20.28 C
ATOM 7 C4' A B 3 2.623 -2.188 30.198 1.00 19.71 C
ATOM 8 O4' A B 3 1.943 -1.016 29.736 1.00 20.07 O
ATOM 9 C3' A B 3 2.187 -3.290 29.283 1.00 21.01 C
ATOM 10 O3' A B 3 2.436 -4.588 29.872 1.00 25.99 O
ATOM 11 C2' A B 3 0.730 -2.941 28.979 1.00 18.61 C
ATOM 12 O2' A B 3 -0.166 -3.353 30.046 1.00 17.69 O
ATOM 13 C1' A B 3 0.875 -1.398 28.866 1.00 15.38 C
ATOM 14 N9 A B 3 1.205 -0.896 27.530 1.00 6.91 N
ATOM 15 C8 A B 3 2.417 -0.540 26.999 1.00 6.76 C
ATOM 16 N7 A B 3 2.360 -0.121 25.754 1.00 6.99 N
ATOM 17 C5 A B 3 1.009 -0.205 25.469 1.00 4.78 C
ATOM 18 C6 A B 3 0.300 0.093 24.328 1.00 7.39 C
ATOM 19 N6 A B 3 0.887 0.550 23.236 1.00 10.73 N
ATOM 20 N1 A B 3 -1.014 -0.091 24.361 1.00 13.27 N
ATOM 21 C2 A B 3 -1.563 -0.558 25.476 1.00 11.39 C
ATOM 22 N3 A B 3 -1.002 -0.867 26.627 1.00 5.72 N
ATOM 23 C4 A B 3 0.307 -0.662 26.544 1.00 3.90 C
ATOM 24 P C B 4 3.146 -5.752 29.011 1.00 22.34 P
ATOM 25 OP1 C B 4 3.580 -6.783 29.974 1.00 28.69 O
ATOM 26 OP2 C B 4 4.151 -5.127 28.128 1.00 25.48 O
ATOM 27 O5' C B 4 2.002 -6.325 28.062 1.00 23.57 O
TER
ATOM 2 P U A 8 -6.491 1.251 16.243 1.00 17.11 P
ATOM 3 OP1 U A 8 -7.814 1.608 15.683 1.00 23.06 O
ATOM 4 OP2 U A 8 -5.478 2.307 16.433 1.00 19.26 O
ATOM 5 O5' U A 8 -6.666 0.643 17.701 1.00 15.41 O
ATOM 6 C5' U A 8 -7.747 -0.196 18.101 1.00 15.31 C
ATOM 7 C4' U A 8 -7.386 -0.756 19.464 1.00 14.49 C
ATOM 8 O4' U A 8 -6.004 -1.141 19.317 1.00 12.61 O
ATOM 9 C3' U A 8 -7.265 0.293 20.534 1.00 16.74 C
ATOM 10 O3' U A 8 -8.416 0.844 21.230 1.00 20.45 O
ATOM 11 C2' U A 8 -6.316 -0.375 21.491 1.00 16.23 C
ATOM 12 O2' U A 8 -6.841 -1.308 22.425 1.00 22.66 O
ATOM 13 C1' U A 8 -5.333 -1.075 20.591 1.00 13.54 C
ATOM 14 N1 U A 8 -4.088 -0.280 20.663 1.00 9.01 N
ATOM 15 C2 U A 8 -3.411 -0.319 21.860 1.00 11.14 C
ATOM 16 O2 U A 8 -3.767 -0.980 22.836 1.00 14.27 O
ATOM 17 N3 U A 8 -2.266 0.431 21.941 1.00 12.96 N
ATOM 18 C4 U A 8 -1.757 1.223 20.946 1.00 13.13 C
ATOM 19 O4 U A 8 -0.717 1.831 21.181 1.00 15.28 O
ATOM 20 C5 U A 8 -2.523 1.221 19.718 1.00 8.16 C
ATOM 21 C6 U A 8 -3.642 0.482 19.619 1.00 8.10 C
ATOM 22 P G A 9 -8.794 2.441 21.242 1.00 14.23 P
ATOM 23 OP1 G A 9 -9.658 2.644 20.058 1.00 14.73 O
ATOM 24 OP2 G A 9 -7.582 3.283 21.368 1.00 16.67 O
ATOM 25 O5' G A 9 -9.644 2.663 22.554 1.00 12.29 O
TER
ATOM 1 O3' C B 2 5.727 0.568 29.742 1.00 21.60 O
ATOM 2 P A B 3 6.182 -0.848 29.142 1.00 15.86 P
ATOM 3 OP1 A B 3 6.906 -1.486 30.244 1.00 11.92 O
ATOM 4 OP2 A B 3 6.870 -0.646 27.843 1.00 20.15 O
ATOM 5 O5' A B 3 4.764 -1.605 28.940 1.00 18.39 O
ATOM 6 C5' A B 3 4.146 -2.007 30.182 1.00 20.28 C
ATOM 7 C4' A B 3 2.623 -2.188 30.198 1.00 19.71 C
ATOM 8 O4' A B 3 1.943 -1.016 29.736 1.00 20.07 O
ATOM 9 C3' A B 3 2.187 -3.290 29.283 1.00 21.01 C
ATOM 10 O3' A B 3 2.436 -4.588 29.872 1.00 25.99 O
ATOM 11 C2' A B 3 0.730 -2.941 28.979 1.00 18.61 C
ATOM 12 O2' A B 3 -0.166 -3.353 30.046 1.00 17.69 O
ATOM 13 C1' A B 3 0.875 -1.398 28.866 1.00 15.38 C
ATOM 14 N9 A B 3 1.205 -0.896 27.530 1.00 6.91 N
ATOM 15 C8 A B 3 2.417 -0.540 26.999 1.00 6.76 C
ATOM 16 N7 A B 3 2.360 -0.121 25.754 1.00 6.99 N
ATOM 17 C5 A B 3 1.009 -0.205 25.469 1.00 4.78 C
ATOM 18 C6 A B 3 0.300 0.093 24.328 1.00 7.39 C
ATOM 19 N6 A B 3 0.887 0.550 23.236 1.00 10.73 N
ATOM 20 N1 A B 3 -1.014 -0.091 24.361 1.00 13.27 N
ATOM 21 C2 A B 3 -1.563 -0.558 25.476 1.00 11.39 C
ATOM 22 N3 A B 3 -1.002 -0.867 26.627 1.00 5.72 N
ATOM 23 C4 A B 3 0.307 -0.662 26.544 1.00 3.90 C
ATOM 24 P C B 4 3.146 -5.752 29.011 1.00 22.34 P
ATOM 25 OP1 C B 4 3.580 -6.783 29.974 1.00 28.69 O
ATOM 26 OP2 C B 4 4.151 -5.127 28.128 1.00 25.48 O
ATOM 27 O5' C B 4 2.002 -6.325 28.062 1.00 23.57 O
TER
Atoms:
C4: (-1.757,1.223,20.946)
N3: (-2.266,0.431,21.941)
OP1: (-7.814,1.608,15.683)
OP2: (-5.478,2.307,16.433)
C2: (-3.411,-0.319,21.860)
C1': (-5.333,-1.075,20.591)
C3': (-7.265,0.293,20.534)
O5': (-6.666,0.643,17.701)
O4': (-6.004,-1.141,19.317)
C5': (-7.747,-0.196,18.101)
P: (-6.491,1.251,16.243)
C4': (-7.386,-0.756,19.464)
C2': (-6.316,-0.375,21.491)
O2': (-6.841,-1.308,22.425)
N1: (-4.088,-0.280,20.663)
O4: (-0.717,1.831,21.181)
O2: (-3.767,-0.980,22.836)
C6: (-3.642,0.482,19.619)
C5: (-2.523,1.221,19.718)
O3': (-8.416,0.844,21.230)
N3: (-2.266,0.431,21.941)
OP1: (-7.814,1.608,15.683)
OP2: (-5.478,2.307,16.433)
C2: (-3.411,-0.319,21.860)
C1': (-5.333,-1.075,20.591)
C3': (-7.265,0.293,20.534)
O5': (-6.666,0.643,17.701)
O4': (-6.004,-1.141,19.317)
C5': (-7.747,-0.196,18.101)
P: (-6.491,1.251,16.243)
C4': (-7.386,-0.756,19.464)
C2': (-6.316,-0.375,21.491)
O2': (-6.841,-1.308,22.425)
N1: (-4.088,-0.280,20.663)
O4: (-0.717,1.831,21.181)
O2: (-3.767,-0.980,22.836)
C6: (-3.642,0.482,19.619)
C5: (-2.523,1.221,19.718)
O3': (-8.416,0.844,21.230)
OP1: (6.906,-1.486,30.244)
OP2: (6.870,-0.646,27.843)
C3': (2.187,-3.290,29.283)
C1': (0.875,-1.398,28.866)
C5': (4.146,-2.007,30.182)
O4': (1.943,-1.016,29.736)
C8: (2.417,-0.540,26.999)
O2': (-0.166,-3.353,30.046)
C6: (0.300,0.093,24.328)
C5: (1.009,-0.205,25.469)
C4: (0.307,-0.662,26.544)
P: (6.182,-0.848,29.142)
C4': (2.623,-2.188,30.198)
C2': (0.730,-2.941,28.979)
C2: (-1.563,-0.558,25.476)
N1: (-1.014,-0.091,24.361)
N3: (-1.002,-0.867,26.627)
N6: (0.887,0.550,23.236)
N7: (2.360,-0.121,25.754)
N9: (1.205,-0.896,27.530)
O5': (4.764,-1.605,28.940)
O3': (2.436,-4.588,29.872)
OP2: (6.870,-0.646,27.843)
C3': (2.187,-3.290,29.283)
C1': (0.875,-1.398,28.866)
C5': (4.146,-2.007,30.182)
O4': (1.943,-1.016,29.736)
C8: (2.417,-0.540,26.999)
O2': (-0.166,-3.353,30.046)
C6: (0.300,0.093,24.328)
C5: (1.009,-0.205,25.469)
C4: (0.307,-0.662,26.544)
P: (6.182,-0.848,29.142)
C4': (2.623,-2.188,30.198)
C2': (0.730,-2.941,28.979)
C2: (-1.563,-0.558,25.476)
N1: (-1.014,-0.091,24.361)
N3: (-1.002,-0.867,26.627)
N6: (0.887,0.550,23.236)
N7: (2.360,-0.121,25.754)
N9: (1.205,-0.896,27.530)
O5': (4.764,-1.605,28.940)
O3': (2.436,-4.588,29.872)
Image (generated by PyMOL):