Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A13:A71
Extra
PDB:
ATOM 1 O3' A A 12 -4.026 -6.509 1.714 1.00 49.02 O
ATOM 2 P U A 13 -5.011 -5.243 1.842 1.00 47.89 P
ATOM 3 OP1 U A 13 -4.682 -4.323 0.727 1.00 56.10 O
ATOM 4 OP2 U A 13 -4.905 -4.741 3.233 1.00 47.36 O
ATOM 5 O5' U A 13 -6.444 -5.890 1.605 1.00 38.91 O
ATOM 6 C5' U A 13 -6.729 -6.600 0.410 1.00 43.06 C
ATOM 7 C4' U A 13 -7.992 -7.414 0.536 1.00 44.81 C
ATOM 8 O4' U A 13 -7.799 -8.480 1.504 1.00 40.27 O
ATOM 9 C3' U A 13 -9.213 -6.674 1.055 1.00 43.77 C
ATOM 10 O3' U A 13 -9.854 -5.888 0.068 1.00 44.85 O
ATOM 11 C2' U A 13 -10.070 -7.809 1.591 1.00 44.73 C
ATOM 12 O2' U A 13 -10.680 -8.524 0.526 1.00 46.59 O
ATOM 13 C1' U A 13 -9.000 -8.700 2.218 1.00 42.55 C
ATOM 14 N1 U A 13 -8.771 -8.354 3.634 1.00 40.88 N
ATOM 15 C2 U A 13 -9.714 -8.783 4.541 1.00 40.39 C
ATOM 16 O2 U A 13 -10.691 -9.433 4.208 1.00 42.12 O
ATOM 17 N3 U A 13 -9.469 -8.426 5.843 1.00 38.49 N
ATOM 18 C4 U A 13 -8.398 -7.698 6.317 1.00 37.50 C
ATOM 19 O4 U A 13 -8.314 -7.459 7.522 1.00 36.09 O
ATOM 20 C5 U A 13 -7.467 -7.285 5.311 1.00 40.62 C
ATOM 21 C6 U A 13 -7.682 -7.617 4.035 1.00 41.20 C
ATOM 22 P U A 14 -10.531 -4.487 0.474 1.00 48.24 P
ATOM 23 OP1 U A 14 -10.855 -3.777 -0.787 1.00 49.97 O
ATOM 24 OP2 U A 14 -9.626 -3.830 1.450 1.00 43.54 O
ATOM 25 O5' U A 14 -11.873 -4.943 1.201 1.00 39.38 O
TER
ATOM 1 O3' A B 70 -14.791 -11.151 16.032 1.00 38.76 O
ATOM 2 P A B 71 -14.116 -12.532 15.551 1.00 38.50 P
ATOM 3 OP1 A B 71 -14.761 -13.619 16.325 1.00 36.85 O
ATOM 4 OP2 A B 71 -12.646 -12.364 15.652 1.00 37.83 O
ATOM 5 O5' A B 71 -14.547 -12.626 14.019 1.00 36.24 O
ATOM 6 C5' A B 71 -15.908 -12.803 13.651 1.00 37.34 C
ATOM 7 C4' A B 71 -16.079 -12.839 12.152 1.00 38.43 C
ATOM 8 O4' A B 71 -15.768 -11.537 11.588 1.00 38.89 O
ATOM 9 C3' A B 71 -15.165 -13.792 11.400 1.00 40.56 C
ATOM 10 O3' A B 71 -15.619 -15.131 11.426 1.00 42.52 O
ATOM 11 C2' A B 71 -15.127 -13.184 10.005 1.00 41.00 C
ATOM 12 O2' A B 71 -16.313 -13.495 9.289 1.00 43.38 O
ATOM 13 C1' A B 71 -15.138 -11.693 10.333 1.00 38.12 C
ATOM 14 N9 A B 71 -13.775 -11.139 10.425 1.00 37.01 N
ATOM 15 C8 A B 71 -12.960 -11.107 11.531 1.00 36.10 C
ATOM 16 N7 A B 71 -11.796 -10.545 11.311 1.00 37.67 N
ATOM 17 C5 A B 71 -11.849 -10.183 9.972 1.00 35.02 C
ATOM 18 C6 A B 71 -10.923 -9.547 9.130 1.00 35.45 C
ATOM 19 N6 A B 71 -9.717 -9.146 9.535 1.00 34.12 N
ATOM 20 N1 A B 71 -11.283 -9.334 7.845 1.00 36.84 N
ATOM 21 C2 A B 71 -12.494 -9.737 7.443 1.00 35.94 C
ATOM 22 N3 A B 71 -13.451 -10.344 8.140 1.00 39.38 N
ATOM 23 C4 A B 71 -13.061 -10.540 9.413 1.00 37.83 C
ATOM 24 P U B 72 -14.561 -16.338 11.493 1.00 46.83 P
ATOM 25 OP1 U B 72 -15.328 -17.577 11.775 1.00 43.55 O
ATOM 26 OP2 U B 72 -13.492 -15.930 12.438 1.00 40.55 O
ATOM 27 O5' U B 72 -13.984 -16.381 10.012 1.00 38.19 O
TER
ATOM 2 P U A 13 -5.011 -5.243 1.842 1.00 47.89 P
ATOM 3 OP1 U A 13 -4.682 -4.323 0.727 1.00 56.10 O
ATOM 4 OP2 U A 13 -4.905 -4.741 3.233 1.00 47.36 O
ATOM 5 O5' U A 13 -6.444 -5.890 1.605 1.00 38.91 O
ATOM 6 C5' U A 13 -6.729 -6.600 0.410 1.00 43.06 C
ATOM 7 C4' U A 13 -7.992 -7.414 0.536 1.00 44.81 C
ATOM 8 O4' U A 13 -7.799 -8.480 1.504 1.00 40.27 O
ATOM 9 C3' U A 13 -9.213 -6.674 1.055 1.00 43.77 C
ATOM 10 O3' U A 13 -9.854 -5.888 0.068 1.00 44.85 O
ATOM 11 C2' U A 13 -10.070 -7.809 1.591 1.00 44.73 C
ATOM 12 O2' U A 13 -10.680 -8.524 0.526 1.00 46.59 O
ATOM 13 C1' U A 13 -9.000 -8.700 2.218 1.00 42.55 C
ATOM 14 N1 U A 13 -8.771 -8.354 3.634 1.00 40.88 N
ATOM 15 C2 U A 13 -9.714 -8.783 4.541 1.00 40.39 C
ATOM 16 O2 U A 13 -10.691 -9.433 4.208 1.00 42.12 O
ATOM 17 N3 U A 13 -9.469 -8.426 5.843 1.00 38.49 N
ATOM 18 C4 U A 13 -8.398 -7.698 6.317 1.00 37.50 C
ATOM 19 O4 U A 13 -8.314 -7.459 7.522 1.00 36.09 O
ATOM 20 C5 U A 13 -7.467 -7.285 5.311 1.00 40.62 C
ATOM 21 C6 U A 13 -7.682 -7.617 4.035 1.00 41.20 C
ATOM 22 P U A 14 -10.531 -4.487 0.474 1.00 48.24 P
ATOM 23 OP1 U A 14 -10.855 -3.777 -0.787 1.00 49.97 O
ATOM 24 OP2 U A 14 -9.626 -3.830 1.450 1.00 43.54 O
ATOM 25 O5' U A 14 -11.873 -4.943 1.201 1.00 39.38 O
TER
ATOM 1 O3' A B 70 -14.791 -11.151 16.032 1.00 38.76 O
ATOM 2 P A B 71 -14.116 -12.532 15.551 1.00 38.50 P
ATOM 3 OP1 A B 71 -14.761 -13.619 16.325 1.00 36.85 O
ATOM 4 OP2 A B 71 -12.646 -12.364 15.652 1.00 37.83 O
ATOM 5 O5' A B 71 -14.547 -12.626 14.019 1.00 36.24 O
ATOM 6 C5' A B 71 -15.908 -12.803 13.651 1.00 37.34 C
ATOM 7 C4' A B 71 -16.079 -12.839 12.152 1.00 38.43 C
ATOM 8 O4' A B 71 -15.768 -11.537 11.588 1.00 38.89 O
ATOM 9 C3' A B 71 -15.165 -13.792 11.400 1.00 40.56 C
ATOM 10 O3' A B 71 -15.619 -15.131 11.426 1.00 42.52 O
ATOM 11 C2' A B 71 -15.127 -13.184 10.005 1.00 41.00 C
ATOM 12 O2' A B 71 -16.313 -13.495 9.289 1.00 43.38 O
ATOM 13 C1' A B 71 -15.138 -11.693 10.333 1.00 38.12 C
ATOM 14 N9 A B 71 -13.775 -11.139 10.425 1.00 37.01 N
ATOM 15 C8 A B 71 -12.960 -11.107 11.531 1.00 36.10 C
ATOM 16 N7 A B 71 -11.796 -10.545 11.311 1.00 37.67 N
ATOM 17 C5 A B 71 -11.849 -10.183 9.972 1.00 35.02 C
ATOM 18 C6 A B 71 -10.923 -9.547 9.130 1.00 35.45 C
ATOM 19 N6 A B 71 -9.717 -9.146 9.535 1.00 34.12 N
ATOM 20 N1 A B 71 -11.283 -9.334 7.845 1.00 36.84 N
ATOM 21 C2 A B 71 -12.494 -9.737 7.443 1.00 35.94 C
ATOM 22 N3 A B 71 -13.451 -10.344 8.140 1.00 39.38 N
ATOM 23 C4 A B 71 -13.061 -10.540 9.413 1.00 37.83 C
ATOM 24 P U B 72 -14.561 -16.338 11.493 1.00 46.83 P
ATOM 25 OP1 U B 72 -15.328 -17.577 11.775 1.00 43.55 O
ATOM 26 OP2 U B 72 -13.492 -15.930 12.438 1.00 40.55 O
ATOM 27 O5' U B 72 -13.984 -16.381 10.012 1.00 38.19 O
TER
Atoms:
C4: (-8.398,-7.698,6.317)
N3: (-9.469,-8.426,5.843)
OP1: (-4.682,-4.323,0.727)
OP2: (-4.905,-4.741,3.233)
C2: (-9.714,-8.783,4.541)
C1': (-9.000,-8.700,2.218)
C3': (-9.213,-6.674,1.055)
O5': (-6.444,-5.890,1.605)
O4': (-7.799,-8.480,1.504)
C5': (-6.729,-6.600,0.410)
P: (-5.011,-5.243,1.842)
C4': (-7.992,-7.414,0.536)
C2': (-10.070,-7.809,1.591)
O2': (-10.680,-8.524,0.526)
N1: (-8.771,-8.354,3.634)
O4: (-8.314,-7.459,7.522)
O2: (-10.691,-9.433,4.208)
C6: (-7.682,-7.617,4.035)
C5: (-7.467,-7.285,5.311)
O3': (-9.854,-5.888,0.068)
N3: (-9.469,-8.426,5.843)
OP1: (-4.682,-4.323,0.727)
OP2: (-4.905,-4.741,3.233)
C2: (-9.714,-8.783,4.541)
C1': (-9.000,-8.700,2.218)
C3': (-9.213,-6.674,1.055)
O5': (-6.444,-5.890,1.605)
O4': (-7.799,-8.480,1.504)
C5': (-6.729,-6.600,0.410)
P: (-5.011,-5.243,1.842)
C4': (-7.992,-7.414,0.536)
C2': (-10.070,-7.809,1.591)
O2': (-10.680,-8.524,0.526)
N1: (-8.771,-8.354,3.634)
O4: (-8.314,-7.459,7.522)
O2: (-10.691,-9.433,4.208)
C6: (-7.682,-7.617,4.035)
C5: (-7.467,-7.285,5.311)
O3': (-9.854,-5.888,0.068)
OP1: (-14.761,-13.619,16.325)
OP2: (-12.646,-12.364,15.652)
C3': (-15.165,-13.792,11.400)
C1': (-15.138,-11.693,10.333)
C5': (-15.908,-12.803,13.651)
O4': (-15.768,-11.537,11.588)
C8: (-12.960,-11.107,11.531)
O2': (-16.313,-13.495,9.289)
C6: (-10.923,-9.547,9.130)
C5: (-11.849,-10.183,9.972)
C4: (-13.061,-10.540,9.413)
P: (-14.116,-12.532,15.551)
C4': (-16.079,-12.839,12.152)
C2': (-15.127,-13.184,10.005)
C2: (-12.494,-9.737,7.443)
N1: (-11.283,-9.334,7.845)
N3: (-13.451,-10.344,8.140)
N6: (-9.717,-9.146,9.535)
N7: (-11.796,-10.545,11.311)
N9: (-13.775,-11.139,10.425)
O5': (-14.547,-12.626,14.019)
O3': (-15.619,-15.131,11.426)
OP2: (-12.646,-12.364,15.652)
C3': (-15.165,-13.792,11.400)
C1': (-15.138,-11.693,10.333)
C5': (-15.908,-12.803,13.651)
O4': (-15.768,-11.537,11.588)
C8: (-12.960,-11.107,11.531)
O2': (-16.313,-13.495,9.289)
C6: (-10.923,-9.547,9.130)
C5: (-11.849,-10.183,9.972)
C4: (-13.061,-10.540,9.413)
P: (-14.116,-12.532,15.551)
C4': (-16.079,-12.839,12.152)
C2': (-15.127,-13.184,10.005)
C2: (-12.494,-9.737,7.443)
N1: (-11.283,-9.334,7.845)
N3: (-13.451,-10.344,8.140)
N6: (-9.717,-9.146,9.535)
N7: (-11.796,-10.545,11.311)
N9: (-13.775,-11.139,10.425)
O5': (-14.547,-12.626,14.019)
O3': (-15.619,-15.131,11.426)
Image (generated by PyMOL):