Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQN:02022:02006
Extra
PDB:
ATOM 1 O3' G A2021 40.366 123.627 107.474 1.00 39.02 O
ATOM 2 P U A2022 40.225 122.121 106.933 1.00 39.27 P
ATOM 3 OP1 U A2022 39.824 121.260 108.057 1.00 40.42 O
ATOM 4 OP2 U A2022 41.444 121.793 106.170 1.00 40.31 O
ATOM 5 O5' U A2022 39.022 122.184 105.896 1.00 39.59 O
ATOM 6 C5' U A2022 37.751 122.723 106.267 1.00 39.12 C
ATOM 7 C4' U A2022 36.762 122.540 105.142 1.00 40.97 C
ATOM 8 O4' U A2022 37.144 123.391 104.022 1.00 41.05 O
ATOM 9 C3' U A2022 36.650 121.119 104.587 1.00 41.59 C
ATOM 10 O3' U A2022 35.301 120.845 104.225 1.00 43.20 O
ATOM 11 C2' U A2022 37.527 121.176 103.337 1.00 41.24 C
ATOM 12 O2' U A2022 37.163 120.277 102.312 1.00 40.11 O
ATOM 13 C1' U A2022 37.278 122.600 102.855 1.00 41.02 C
ATOM 14 N1 U A2022 38.388 123.113 102.037 1.00 40.43 N
ATOM 15 C2 U A2022 38.121 123.414 100.708 1.00 40.35 C
ATOM 16 O2 U A2022 37.021 123.309 100.216 1.00 38.74 O
ATOM 17 N3 U A2022 39.205 123.837 99.976 1.00 41.00 N
ATOM 18 C4 U A2022 40.500 123.989 100.422 1.00 38.48 C
ATOM 19 O4 U A2022 41.368 124.350 99.629 1.00 38.23 O
ATOM 20 C5 U A2022 40.695 123.696 101.812 1.00 38.14 C
ATOM 21 C6 U A2022 39.658 123.281 102.555 1.00 38.46 C
ATOM 22 P C A2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 23 OP1 C A2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 24 OP2 C A2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 25 O5' C A2023 35.054 118.465 105.092 1.00 38.99 O
TER
ATOM 1 O3' U B2005 39.153 128.676 89.121 1.00 37.58 O
ATOM 2 P A B2006 38.825 129.818 90.197 1.00 38.13 P
ATOM 3 OP1 A B2006 38.317 130.990 89.439 1.00 41.65 O
ATOM 4 OP2 A B2006 40.006 129.966 91.079 1.00 36.91 O
ATOM 5 O5' A B2006 37.654 129.200 91.085 1.00 39.28 O
ATOM 6 C5' A B2006 36.398 128.814 90.509 1.00 38.75 C
ATOM 7 C4' A B2006 35.633 127.933 91.473 1.00 39.62 C
ATOM 8 O4' A B2006 36.406 126.737 91.761 1.00 39.33 O
ATOM 9 C3' A B2006 35.344 128.517 92.849 1.00 37.99 C
ATOM 10 O3' A B2006 34.173 129.318 92.819 1.00 37.61 O
ATOM 11 C2' A B2006 35.089 127.261 93.662 1.00 39.51 C
ATOM 12 O2' A B2006 33.812 126.744 93.353 1.00 41.16 O
ATOM 13 C1' A B2006 36.137 126.305 93.087 1.00 39.26 C
ATOM 14 N9 A B2006 37.398 126.273 93.835 1.00 40.76 N
ATOM 15 C8 A B2006 38.593 126.842 93.477 1.00 39.00 C
ATOM 16 N7 A B2006 39.555 126.641 94.339 1.00 37.69 N
ATOM 17 C5 A B2006 38.958 125.886 95.338 1.00 39.65 C
ATOM 18 C6 A B2006 39.452 125.343 96.548 1.00 38.48 C
ATOM 19 N6 A B2006 40.722 125.455 96.959 1.00 30.56 N
ATOM 20 N1 A B2006 38.587 124.661 97.322 1.00 37.45 N
ATOM 21 C2 A B2006 37.330 124.518 96.900 1.00 39.35 C
ATOM 22 N3 A B2006 36.755 124.966 95.790 1.00 40.91 N
ATOM 23 C4 A B2006 37.629 125.655 95.044 1.00 39.59 C
ATOM 24 P C B2007 34.099 130.676 93.675 1.00 38.57 P
ATOM 25 OP1 C B2007 32.919 131.437 93.189 1.00 36.78 O
ATOM 26 OP2 C B2007 35.444 131.318 93.662 1.00 38.05 O
ATOM 27 O5' C B2007 33.785 130.203 95.164 1.00 37.20 O
TER
ATOM 2 P U A2022 40.225 122.121 106.933 1.00 39.27 P
ATOM 3 OP1 U A2022 39.824 121.260 108.057 1.00 40.42 O
ATOM 4 OP2 U A2022 41.444 121.793 106.170 1.00 40.31 O
ATOM 5 O5' U A2022 39.022 122.184 105.896 1.00 39.59 O
ATOM 6 C5' U A2022 37.751 122.723 106.267 1.00 39.12 C
ATOM 7 C4' U A2022 36.762 122.540 105.142 1.00 40.97 C
ATOM 8 O4' U A2022 37.144 123.391 104.022 1.00 41.05 O
ATOM 9 C3' U A2022 36.650 121.119 104.587 1.00 41.59 C
ATOM 10 O3' U A2022 35.301 120.845 104.225 1.00 43.20 O
ATOM 11 C2' U A2022 37.527 121.176 103.337 1.00 41.24 C
ATOM 12 O2' U A2022 37.163 120.277 102.312 1.00 40.11 O
ATOM 13 C1' U A2022 37.278 122.600 102.855 1.00 41.02 C
ATOM 14 N1 U A2022 38.388 123.113 102.037 1.00 40.43 N
ATOM 15 C2 U A2022 38.121 123.414 100.708 1.00 40.35 C
ATOM 16 O2 U A2022 37.021 123.309 100.216 1.00 38.74 O
ATOM 17 N3 U A2022 39.205 123.837 99.976 1.00 41.00 N
ATOM 18 C4 U A2022 40.500 123.989 100.422 1.00 38.48 C
ATOM 19 O4 U A2022 41.368 124.350 99.629 1.00 38.23 O
ATOM 20 C5 U A2022 40.695 123.696 101.812 1.00 38.14 C
ATOM 21 C6 U A2022 39.658 123.281 102.555 1.00 38.46 C
ATOM 22 P C A2023 34.396 119.917 105.176 1.00 41.77 P
ATOM 23 OP1 C A2023 33.031 119.887 104.602 1.00 41.61 O
ATOM 24 OP2 C A2023 34.593 120.399 106.560 1.00 44.23 O
ATOM 25 O5' C A2023 35.054 118.465 105.092 1.00 38.99 O
TER
ATOM 1 O3' U B2005 39.153 128.676 89.121 1.00 37.58 O
ATOM 2 P A B2006 38.825 129.818 90.197 1.00 38.13 P
ATOM 3 OP1 A B2006 38.317 130.990 89.439 1.00 41.65 O
ATOM 4 OP2 A B2006 40.006 129.966 91.079 1.00 36.91 O
ATOM 5 O5' A B2006 37.654 129.200 91.085 1.00 39.28 O
ATOM 6 C5' A B2006 36.398 128.814 90.509 1.00 38.75 C
ATOM 7 C4' A B2006 35.633 127.933 91.473 1.00 39.62 C
ATOM 8 O4' A B2006 36.406 126.737 91.761 1.00 39.33 O
ATOM 9 C3' A B2006 35.344 128.517 92.849 1.00 37.99 C
ATOM 10 O3' A B2006 34.173 129.318 92.819 1.00 37.61 O
ATOM 11 C2' A B2006 35.089 127.261 93.662 1.00 39.51 C
ATOM 12 O2' A B2006 33.812 126.744 93.353 1.00 41.16 O
ATOM 13 C1' A B2006 36.137 126.305 93.087 1.00 39.26 C
ATOM 14 N9 A B2006 37.398 126.273 93.835 1.00 40.76 N
ATOM 15 C8 A B2006 38.593 126.842 93.477 1.00 39.00 C
ATOM 16 N7 A B2006 39.555 126.641 94.339 1.00 37.69 N
ATOM 17 C5 A B2006 38.958 125.886 95.338 1.00 39.65 C
ATOM 18 C6 A B2006 39.452 125.343 96.548 1.00 38.48 C
ATOM 19 N6 A B2006 40.722 125.455 96.959 1.00 30.56 N
ATOM 20 N1 A B2006 38.587 124.661 97.322 1.00 37.45 N
ATOM 21 C2 A B2006 37.330 124.518 96.900 1.00 39.35 C
ATOM 22 N3 A B2006 36.755 124.966 95.790 1.00 40.91 N
ATOM 23 C4 A B2006 37.629 125.655 95.044 1.00 39.59 C
ATOM 24 P C B2007 34.099 130.676 93.675 1.00 38.57 P
ATOM 25 OP1 C B2007 32.919 131.437 93.189 1.00 36.78 O
ATOM 26 OP2 C B2007 35.444 131.318 93.662 1.00 38.05 O
ATOM 27 O5' C B2007 33.785 130.203 95.164 1.00 37.20 O
TER
Atoms:
C4: (40.500,123.989,100.422)
N3: (39.205,123.837,99.976)
OP1: (39.824,121.260,108.057)
OP2: (41.444,121.793,106.170)
C2: (38.121,123.414,100.708)
C1': (37.278,122.600,102.855)
C3': (36.650,121.119,104.587)
O5': (39.022,122.184,105.896)
O4': (37.144,123.391,104.022)
C5': (37.751,122.723,106.267)
P: (40.225,122.121,106.933)
C4': (36.762,122.540,105.142)
C2': (37.527,121.176,103.337)
O2': (37.163,120.277,102.312)
N1: (38.388,123.113,102.037)
O4: (41.368,124.350,99.629)
O2: (37.021,123.309,100.216)
C6: (39.658,123.281,102.555)
C5: (40.695,123.696,101.812)
O3': (35.301,120.845,104.225)
N3: (39.205,123.837,99.976)
OP1: (39.824,121.260,108.057)
OP2: (41.444,121.793,106.170)
C2: (38.121,123.414,100.708)
C1': (37.278,122.600,102.855)
C3': (36.650,121.119,104.587)
O5': (39.022,122.184,105.896)
O4': (37.144,123.391,104.022)
C5': (37.751,122.723,106.267)
P: (40.225,122.121,106.933)
C4': (36.762,122.540,105.142)
C2': (37.527,121.176,103.337)
O2': (37.163,120.277,102.312)
N1: (38.388,123.113,102.037)
O4: (41.368,124.350,99.629)
O2: (37.021,123.309,100.216)
C6: (39.658,123.281,102.555)
C5: (40.695,123.696,101.812)
O3': (35.301,120.845,104.225)
OP1: (38.317,130.990,89.439)
OP2: (40.006,129.966,91.079)
C3': (35.344,128.517,92.849)
C1': (36.137,126.305,93.087)
C5': (36.398,128.814,90.509)
O4': (36.406,126.737,91.761)
C8: (38.593,126.842,93.477)
O2': (33.812,126.744,93.353)
C6: (39.452,125.343,96.548)
C5: (38.958,125.886,95.338)
C4: (37.629,125.655,95.044)
P: (38.825,129.818,90.197)
C4': (35.633,127.933,91.473)
C2': (35.089,127.261,93.662)
C2: (37.330,124.518,96.900)
N1: (38.587,124.661,97.322)
N3: (36.755,124.966,95.790)
N6: (40.722,125.455,96.959)
N7: (39.555,126.641,94.339)
N9: (37.398,126.273,93.835)
O5': (37.654,129.200,91.085)
O3': (34.173,129.318,92.819)
OP2: (40.006,129.966,91.079)
C3': (35.344,128.517,92.849)
C1': (36.137,126.305,93.087)
C5': (36.398,128.814,90.509)
O4': (36.406,126.737,91.761)
C8: (38.593,126.842,93.477)
O2': (33.812,126.744,93.353)
C6: (39.452,125.343,96.548)
C5: (38.958,125.886,95.338)
C4: (37.629,125.655,95.044)
P: (38.825,129.818,90.197)
C4': (35.633,127.933,91.473)
C2': (35.089,127.261,93.662)
C2: (37.330,124.518,96.900)
N1: (38.587,124.661,97.322)
N3: (36.755,124.966,95.790)
N6: (40.722,125.455,96.959)
N7: (39.555,126.641,94.339)
N9: (37.398,126.273,93.835)
O5': (37.654,129.200,91.085)
O3': (34.173,129.318,92.819)
Image (generated by PyMOL):