Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:B11:A4
Extra
PDB:
ATOM 1 O3' G A 10 -2.020 16.410 44.444 1.00 30.11 O
ATOM 2 P U A 11 -1.915 17.267 43.108 1.00 31.84 P
ATOM 3 OP1 U A 11 -1.878 16.344 41.944 1.00 33.64 O
ATOM 4 OP2 U A 11 -0.818 18.246 43.322 1.00 32.44 O
ATOM 5 O5' U A 11 -3.287 18.065 43.088 1.00 32.19 O
ATOM 6 C5' U A 11 -4.512 17.367 43.155 1.00 28.97 C
ATOM 7 C4' U A 11 -5.603 18.295 43.589 1.00 30.14 C
ATOM 8 O4' U A 11 -5.312 18.798 44.917 1.00 30.22 O
ATOM 9 C3' U A 11 -5.764 19.569 42.783 1.00 28.67 C
ATOM 10 O3' U A 11 -6.475 19.310 41.588 1.00 29.98 O
ATOM 11 C2' U A 11 -6.589 20.404 43.745 1.00 27.12 C
ATOM 12 O2' U A 11 -7.910 19.917 43.809 1.00 26.52 O
ATOM 13 C1' U A 11 -5.901 20.074 45.066 1.00 26.99 C
ATOM 14 N1 U A 11 -4.850 21.031 45.421 1.00 26.65 N
ATOM 15 C2 U A 11 -5.258 22.292 45.768 1.00 24.96 C
ATOM 16 O2 U A 11 -6.413 22.631 45.729 1.00 27.15 O
ATOM 17 N3 U A 11 -4.263 23.145 46.144 1.00 25.61 N
ATOM 18 C4 U A 11 -2.920 22.881 46.175 1.00 26.65 C
ATOM 19 O4 U A 11 -2.140 23.784 46.473 1.00 27.57 O
ATOM 20 C5 U A 11 -2.564 21.551 45.773 1.00 26.24 C
ATOM 21 C6 U A 11 -3.523 20.690 45.421 1.00 25.55 C
ATOM 22 P C A 12 -6.182 20.198 40.289 1.00 27.57 P
ATOM 23 OP1 C A 12 -6.777 19.501 39.127 1.00 28.73 O
ATOM 24 OP2 C A 12 -4.737 20.527 40.286 1.00 28.53 O
ATOM 25 O5' C A 12 -7.001 21.537 40.572 1.00 31.20 O
TER
ATOM 1 O3' G B 3 -3.836 34.191 49.927 1.00 36.78 O
ATOM 2 P A B 4 -4.097 33.164 51.135 1.00 34.97 P
ATOM 3 OP1 A B 4 -4.512 33.930 52.335 1.00 36.27 O
ATOM 4 OP2 A B 4 -2.929 32.262 51.223 1.00 39.22 O
ATOM 5 O5' A B 4 -5.336 32.310 50.615 1.00 36.83 O
ATOM 6 C5' A B 4 -6.583 32.935 50.339 1.00 34.56 C
ATOM 7 C4' A B 4 -7.528 31.947 49.706 1.00 36.66 C
ATOM 8 O4' A B 4 -6.966 31.514 48.438 1.00 36.23 O
ATOM 9 C3' A B 4 -7.766 30.641 50.457 1.00 35.43 C
ATOM 10 O3' A B 4 -8.759 30.757 51.473 1.00 35.72 O
ATOM 11 C2' A B 4 -8.245 29.738 49.331 1.00 34.22 C
ATOM 12 O2' A B 4 -9.576 30.015 48.942 1.00 29.76 O
ATOM 13 C1' A B 4 -7.292 30.151 48.212 1.00 34.83 C
ATOM 14 N9 A B 4 -6.052 29.377 48.234 1.00 35.50 N
ATOM 15 C8 A B 4 -4.826 29.749 48.740 1.00 35.30 C
ATOM 16 N7 A B 4 -3.894 28.839 48.590 1.00 32.75 N
ATOM 17 C5 A B 4 -4.550 27.797 47.948 1.00 33.18 C
ATOM 18 C6 A B 4 -4.114 26.543 47.507 1.00 30.68 C
ATOM 19 N6 A B 4 -2.862 26.111 47.640 1.00 31.31 N
ATOM 20 N1 A B 4 -5.016 25.737 46.920 1.00 28.56 N
ATOM 21 C2 A B 4 -6.268 26.169 46.789 1.00 33.38 C
ATOM 22 N3 A B 4 -6.805 27.332 47.157 1.00 33.84 N
ATOM 23 C4 A B 4 -5.879 28.111 47.736 1.00 33.97 C
TER
ATOM 2 P U A 11 -1.915 17.267 43.108 1.00 31.84 P
ATOM 3 OP1 U A 11 -1.878 16.344 41.944 1.00 33.64 O
ATOM 4 OP2 U A 11 -0.818 18.246 43.322 1.00 32.44 O
ATOM 5 O5' U A 11 -3.287 18.065 43.088 1.00 32.19 O
ATOM 6 C5' U A 11 -4.512 17.367 43.155 1.00 28.97 C
ATOM 7 C4' U A 11 -5.603 18.295 43.589 1.00 30.14 C
ATOM 8 O4' U A 11 -5.312 18.798 44.917 1.00 30.22 O
ATOM 9 C3' U A 11 -5.764 19.569 42.783 1.00 28.67 C
ATOM 10 O3' U A 11 -6.475 19.310 41.588 1.00 29.98 O
ATOM 11 C2' U A 11 -6.589 20.404 43.745 1.00 27.12 C
ATOM 12 O2' U A 11 -7.910 19.917 43.809 1.00 26.52 O
ATOM 13 C1' U A 11 -5.901 20.074 45.066 1.00 26.99 C
ATOM 14 N1 U A 11 -4.850 21.031 45.421 1.00 26.65 N
ATOM 15 C2 U A 11 -5.258 22.292 45.768 1.00 24.96 C
ATOM 16 O2 U A 11 -6.413 22.631 45.729 1.00 27.15 O
ATOM 17 N3 U A 11 -4.263 23.145 46.144 1.00 25.61 N
ATOM 18 C4 U A 11 -2.920 22.881 46.175 1.00 26.65 C
ATOM 19 O4 U A 11 -2.140 23.784 46.473 1.00 27.57 O
ATOM 20 C5 U A 11 -2.564 21.551 45.773 1.00 26.24 C
ATOM 21 C6 U A 11 -3.523 20.690 45.421 1.00 25.55 C
ATOM 22 P C A 12 -6.182 20.198 40.289 1.00 27.57 P
ATOM 23 OP1 C A 12 -6.777 19.501 39.127 1.00 28.73 O
ATOM 24 OP2 C A 12 -4.737 20.527 40.286 1.00 28.53 O
ATOM 25 O5' C A 12 -7.001 21.537 40.572 1.00 31.20 O
TER
ATOM 1 O3' G B 3 -3.836 34.191 49.927 1.00 36.78 O
ATOM 2 P A B 4 -4.097 33.164 51.135 1.00 34.97 P
ATOM 3 OP1 A B 4 -4.512 33.930 52.335 1.00 36.27 O
ATOM 4 OP2 A B 4 -2.929 32.262 51.223 1.00 39.22 O
ATOM 5 O5' A B 4 -5.336 32.310 50.615 1.00 36.83 O
ATOM 6 C5' A B 4 -6.583 32.935 50.339 1.00 34.56 C
ATOM 7 C4' A B 4 -7.528 31.947 49.706 1.00 36.66 C
ATOM 8 O4' A B 4 -6.966 31.514 48.438 1.00 36.23 O
ATOM 9 C3' A B 4 -7.766 30.641 50.457 1.00 35.43 C
ATOM 10 O3' A B 4 -8.759 30.757 51.473 1.00 35.72 O
ATOM 11 C2' A B 4 -8.245 29.738 49.331 1.00 34.22 C
ATOM 12 O2' A B 4 -9.576 30.015 48.942 1.00 29.76 O
ATOM 13 C1' A B 4 -7.292 30.151 48.212 1.00 34.83 C
ATOM 14 N9 A B 4 -6.052 29.377 48.234 1.00 35.50 N
ATOM 15 C8 A B 4 -4.826 29.749 48.740 1.00 35.30 C
ATOM 16 N7 A B 4 -3.894 28.839 48.590 1.00 32.75 N
ATOM 17 C5 A B 4 -4.550 27.797 47.948 1.00 33.18 C
ATOM 18 C6 A B 4 -4.114 26.543 47.507 1.00 30.68 C
ATOM 19 N6 A B 4 -2.862 26.111 47.640 1.00 31.31 N
ATOM 20 N1 A B 4 -5.016 25.737 46.920 1.00 28.56 N
ATOM 21 C2 A B 4 -6.268 26.169 46.789 1.00 33.38 C
ATOM 22 N3 A B 4 -6.805 27.332 47.157 1.00 33.84 N
ATOM 23 C4 A B 4 -5.879 28.111 47.736 1.00 33.97 C
TER
Atoms:
C4: (-2.920,22.881,46.175)
N3: (-4.263,23.145,46.144)
OP1: (-1.878,16.344,41.944)
OP2: (-0.818,18.246,43.322)
C2: (-5.258,22.292,45.768)
C1': (-5.901,20.074,45.066)
C3': (-5.764,19.569,42.783)
O5': (-3.287,18.065,43.088)
O4': (-5.312,18.798,44.917)
C5': (-4.512,17.367,43.155)
P: (-1.915,17.267,43.108)
C4': (-5.603,18.295,43.589)
C2': (-6.589,20.404,43.745)
O2': (-7.910,19.917,43.809)
N1: (-4.850,21.031,45.421)
O4: (-2.140,23.784,46.473)
O2: (-6.413,22.631,45.729)
C6: (-3.523,20.690,45.421)
C5: (-2.564,21.551,45.773)
O3': (-6.475,19.310,41.588)
N3: (-4.263,23.145,46.144)
OP1: (-1.878,16.344,41.944)
OP2: (-0.818,18.246,43.322)
C2: (-5.258,22.292,45.768)
C1': (-5.901,20.074,45.066)
C3': (-5.764,19.569,42.783)
O5': (-3.287,18.065,43.088)
O4': (-5.312,18.798,44.917)
C5': (-4.512,17.367,43.155)
P: (-1.915,17.267,43.108)
C4': (-5.603,18.295,43.589)
C2': (-6.589,20.404,43.745)
O2': (-7.910,19.917,43.809)
N1: (-4.850,21.031,45.421)
O4: (-2.140,23.784,46.473)
O2: (-6.413,22.631,45.729)
C6: (-3.523,20.690,45.421)
C5: (-2.564,21.551,45.773)
O3': (-6.475,19.310,41.588)
OP1: (-4.512,33.930,52.335)
OP2: (-2.929,32.262,51.223)
C3': (-7.766,30.641,50.457)
C1': (-7.292,30.151,48.212)
C5': (-6.583,32.935,50.339)
O4': (-6.966,31.514,48.438)
C8: (-4.826,29.749,48.740)
O2': (-9.576,30.015,48.942)
C6: (-4.114,26.543,47.507)
C5: (-4.550,27.797,47.948)
C4: (-5.879,28.111,47.736)
P: (-4.097,33.164,51.135)
C4': (-7.528,31.947,49.706)
C2': (-8.245,29.738,49.331)
C2: (-6.268,26.169,46.789)
N1: (-5.016,25.737,46.920)
N3: (-6.805,27.332,47.157)
N6: (-2.862,26.111,47.640)
N7: (-3.894,28.839,48.590)
N9: (-6.052,29.377,48.234)
O5': (-5.336,32.310,50.615)
O3': (-8.759,30.757,51.473)
OP2: (-2.929,32.262,51.223)
C3': (-7.766,30.641,50.457)
C1': (-7.292,30.151,48.212)
C5': (-6.583,32.935,50.339)
O4': (-6.966,31.514,48.438)
C8: (-4.826,29.749,48.740)
O2': (-9.576,30.015,48.942)
C6: (-4.114,26.543,47.507)
C5: (-4.550,27.797,47.948)
C4: (-5.879,28.111,47.736)
P: (-4.097,33.164,51.135)
C4': (-7.528,31.947,49.706)
C2': (-8.245,29.738,49.331)
C2: (-6.268,26.169,46.789)
N1: (-5.016,25.737,46.920)
N3: (-6.805,27.332,47.157)
N6: (-2.862,26.111,47.640)
N7: (-3.894,28.839,48.590)
N9: (-6.052,29.377,48.234)
O5': (-5.336,32.310,50.615)
O3': (-8.759,30.757,51.473)
Image (generated by PyMOL):