Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:02024:02013
Extra
PDB:
ATOM 1 O3' C A2023 33.351 116.224 105.952 1.00 33.91 O
ATOM 2 P U A2024 32.321 116.718 107.077 1.00 35.99 P
ATOM 3 OP1 U A2024 31.037 116.053 106.718 1.00 35.02 O
ATOM 4 OP2 U A2024 32.375 118.199 107.210 1.00 33.98 O
ATOM 5 O5' U A2024 32.880 116.069 108.418 1.00 33.28 O
ATOM 6 C5' U A2024 32.739 114.663 108.656 1.00 35.06 C
ATOM 7 C4' U A2024 33.265 114.307 110.022 1.00 35.36 C
ATOM 8 O4' U A2024 34.713 114.294 110.018 1.00 36.75 O
ATOM 9 C3' U A2024 32.907 115.269 111.139 1.00 34.46 C
ATOM 10 O3' U A2024 31.597 115.032 111.610 1.00 35.25 O
ATOM 11 C2' U A2024 33.972 114.949 112.174 1.00 34.43 C
ATOM 12 O2' U A2024 33.708 113.734 112.841 1.00 31.55 O
ATOM 13 C1' U A2024 35.195 114.751 111.276 1.00 36.14 C
ATOM 14 N1 U A2024 35.962 115.989 111.047 1.00 36.58 N
ATOM 15 C2 U A2024 36.921 116.355 111.979 1.00 36.57 C
ATOM 16 O2 U A2024 37.159 115.714 112.987 1.00 37.19 O
ATOM 17 N3 U A2024 37.601 117.505 111.679 1.00 37.87 N
ATOM 18 C4 U A2024 37.433 118.308 110.570 1.00 38.74 C
ATOM 19 O4 U A2024 38.188 119.266 110.396 1.00 39.43 O
ATOM 20 C5 U A2024 36.419 117.871 109.667 1.00 38.80 C
ATOM 21 C6 U A2024 35.736 116.760 109.928 1.00 37.38 C
ATOM 22 P G A2025 30.780 116.213 112.328 1.00 37.56 P
ATOM 23 OP1 G A2025 29.418 115.662 112.509 1.00 36.90 O
ATOM 24 OP2 G A2025 30.967 117.498 111.604 1.00 34.35 O
ATOM 25 O5' G A2025 31.479 116.342 113.753 1.00 36.22 O
TER
ATOM 1 O3' C B2012 45.730 123.386 119.508 1.00 33.82 O
ATOM 2 P A B2013 46.612 122.066 119.304 1.00 34.93 P
ATOM 3 OP1 A B2013 47.493 121.938 120.485 1.00 35.23 O
ATOM 4 OP2 A B2013 47.203 122.096 117.940 1.00 33.52 O
ATOM 5 O5' A B2013 45.549 120.885 119.359 1.00 34.94 O
ATOM 6 C5' A B2013 45.677 119.752 118.496 1.00 34.60 C
ATOM 7 C4' A B2013 44.506 118.824 118.670 1.00 34.97 C
ATOM 8 O4' A B2013 43.272 119.515 118.343 1.00 36.76 O
ATOM 9 C3' A B2013 44.514 117.640 117.725 1.00 34.52 C
ATOM 10 O3' A B2013 45.356 116.610 118.201 1.00 33.85 O
ATOM 11 C2' A B2013 43.049 117.242 117.705 1.00 36.68 C
ATOM 12 O2' A B2013 42.670 116.542 118.873 1.00 36.73 O
ATOM 13 C1' A B2013 42.382 118.617 117.692 1.00 37.44 C
ATOM 14 N9 A B2013 42.156 119.109 116.331 1.00 39.08 N
ATOM 15 C8 A B2013 42.853 120.095 115.677 1.00 39.40 C
ATOM 16 N7 A B2013 42.420 120.333 114.464 1.00 39.44 N
ATOM 17 C5 A B2013 41.367 119.446 114.306 1.00 38.42 C
ATOM 18 C6 A B2013 40.496 119.210 113.242 1.00 38.01 C
ATOM 19 N6 A B2013 40.553 119.879 112.089 1.00 38.16 N
ATOM 20 N1 A B2013 39.556 118.254 113.399 1.00 36.85 N
ATOM 21 C2 A B2013 39.511 117.583 114.551 1.00 37.17 C
ATOM 22 N3 A B2013 40.278 117.713 115.630 1.00 37.89 N
ATOM 23 C4 A B2013 41.197 118.678 115.443 1.00 39.13 C
ATOM 24 P G B2014 46.183 115.724 117.158 1.00 31.64 P
ATOM 25 OP1 G B2014 47.033 114.810 117.961 1.00 30.00 O
ATOM 26 OP2 G B2014 46.806 116.629 116.153 1.00 30.12 O
ATOM 27 O5' G B2014 45.059 114.857 116.437 1.00 31.20 O
TER
ATOM 2 P U A2024 32.321 116.718 107.077 1.00 35.99 P
ATOM 3 OP1 U A2024 31.037 116.053 106.718 1.00 35.02 O
ATOM 4 OP2 U A2024 32.375 118.199 107.210 1.00 33.98 O
ATOM 5 O5' U A2024 32.880 116.069 108.418 1.00 33.28 O
ATOM 6 C5' U A2024 32.739 114.663 108.656 1.00 35.06 C
ATOM 7 C4' U A2024 33.265 114.307 110.022 1.00 35.36 C
ATOM 8 O4' U A2024 34.713 114.294 110.018 1.00 36.75 O
ATOM 9 C3' U A2024 32.907 115.269 111.139 1.00 34.46 C
ATOM 10 O3' U A2024 31.597 115.032 111.610 1.00 35.25 O
ATOM 11 C2' U A2024 33.972 114.949 112.174 1.00 34.43 C
ATOM 12 O2' U A2024 33.708 113.734 112.841 1.00 31.55 O
ATOM 13 C1' U A2024 35.195 114.751 111.276 1.00 36.14 C
ATOM 14 N1 U A2024 35.962 115.989 111.047 1.00 36.58 N
ATOM 15 C2 U A2024 36.921 116.355 111.979 1.00 36.57 C
ATOM 16 O2 U A2024 37.159 115.714 112.987 1.00 37.19 O
ATOM 17 N3 U A2024 37.601 117.505 111.679 1.00 37.87 N
ATOM 18 C4 U A2024 37.433 118.308 110.570 1.00 38.74 C
ATOM 19 O4 U A2024 38.188 119.266 110.396 1.00 39.43 O
ATOM 20 C5 U A2024 36.419 117.871 109.667 1.00 38.80 C
ATOM 21 C6 U A2024 35.736 116.760 109.928 1.00 37.38 C
ATOM 22 P G A2025 30.780 116.213 112.328 1.00 37.56 P
ATOM 23 OP1 G A2025 29.418 115.662 112.509 1.00 36.90 O
ATOM 24 OP2 G A2025 30.967 117.498 111.604 1.00 34.35 O
ATOM 25 O5' G A2025 31.479 116.342 113.753 1.00 36.22 O
TER
ATOM 1 O3' C B2012 45.730 123.386 119.508 1.00 33.82 O
ATOM 2 P A B2013 46.612 122.066 119.304 1.00 34.93 P
ATOM 3 OP1 A B2013 47.493 121.938 120.485 1.00 35.23 O
ATOM 4 OP2 A B2013 47.203 122.096 117.940 1.00 33.52 O
ATOM 5 O5' A B2013 45.549 120.885 119.359 1.00 34.94 O
ATOM 6 C5' A B2013 45.677 119.752 118.496 1.00 34.60 C
ATOM 7 C4' A B2013 44.506 118.824 118.670 1.00 34.97 C
ATOM 8 O4' A B2013 43.272 119.515 118.343 1.00 36.76 O
ATOM 9 C3' A B2013 44.514 117.640 117.725 1.00 34.52 C
ATOM 10 O3' A B2013 45.356 116.610 118.201 1.00 33.85 O
ATOM 11 C2' A B2013 43.049 117.242 117.705 1.00 36.68 C
ATOM 12 O2' A B2013 42.670 116.542 118.873 1.00 36.73 O
ATOM 13 C1' A B2013 42.382 118.617 117.692 1.00 37.44 C
ATOM 14 N9 A B2013 42.156 119.109 116.331 1.00 39.08 N
ATOM 15 C8 A B2013 42.853 120.095 115.677 1.00 39.40 C
ATOM 16 N7 A B2013 42.420 120.333 114.464 1.00 39.44 N
ATOM 17 C5 A B2013 41.367 119.446 114.306 1.00 38.42 C
ATOM 18 C6 A B2013 40.496 119.210 113.242 1.00 38.01 C
ATOM 19 N6 A B2013 40.553 119.879 112.089 1.00 38.16 N
ATOM 20 N1 A B2013 39.556 118.254 113.399 1.00 36.85 N
ATOM 21 C2 A B2013 39.511 117.583 114.551 1.00 37.17 C
ATOM 22 N3 A B2013 40.278 117.713 115.630 1.00 37.89 N
ATOM 23 C4 A B2013 41.197 118.678 115.443 1.00 39.13 C
ATOM 24 P G B2014 46.183 115.724 117.158 1.00 31.64 P
ATOM 25 OP1 G B2014 47.033 114.810 117.961 1.00 30.00 O
ATOM 26 OP2 G B2014 46.806 116.629 116.153 1.00 30.12 O
ATOM 27 O5' G B2014 45.059 114.857 116.437 1.00 31.20 O
TER
Atoms:
C4: (37.433,118.308,110.570)
N3: (37.601,117.505,111.679)
OP1: (31.037,116.053,106.718)
OP2: (32.375,118.199,107.210)
C2: (36.921,116.355,111.979)
C1': (35.195,114.751,111.276)
C3': (32.907,115.269,111.139)
O5': (32.880,116.069,108.418)
O4': (34.713,114.294,110.018)
C5': (32.739,114.663,108.656)
P: (32.321,116.718,107.077)
C4': (33.265,114.307,110.022)
C2': (33.972,114.949,112.174)
O2': (33.708,113.734,112.841)
N1: (35.962,115.989,111.047)
O4: (38.188,119.266,110.396)
O2: (37.159,115.714,112.987)
C6: (35.736,116.760,109.928)
C5: (36.419,117.871,109.667)
O3': (31.597,115.032,111.610)
N3: (37.601,117.505,111.679)
OP1: (31.037,116.053,106.718)
OP2: (32.375,118.199,107.210)
C2: (36.921,116.355,111.979)
C1': (35.195,114.751,111.276)
C3': (32.907,115.269,111.139)
O5': (32.880,116.069,108.418)
O4': (34.713,114.294,110.018)
C5': (32.739,114.663,108.656)
P: (32.321,116.718,107.077)
C4': (33.265,114.307,110.022)
C2': (33.972,114.949,112.174)
O2': (33.708,113.734,112.841)
N1: (35.962,115.989,111.047)
O4: (38.188,119.266,110.396)
O2: (37.159,115.714,112.987)
C6: (35.736,116.760,109.928)
C5: (36.419,117.871,109.667)
O3': (31.597,115.032,111.610)
OP1: (47.493,121.938,120.485)
OP2: (47.203,122.096,117.940)
C3': (44.514,117.640,117.725)
C1': (42.382,118.617,117.692)
C5': (45.677,119.752,118.496)
O4': (43.272,119.515,118.343)
C8: (42.853,120.095,115.677)
O2': (42.670,116.542,118.873)
C6: (40.496,119.210,113.242)
C5: (41.367,119.446,114.306)
C4: (41.197,118.678,115.443)
P: (46.612,122.066,119.304)
C4': (44.506,118.824,118.670)
C2': (43.049,117.242,117.705)
C2: (39.511,117.583,114.551)
N1: (39.556,118.254,113.399)
N3: (40.278,117.713,115.630)
N6: (40.553,119.879,112.089)
N7: (42.420,120.333,114.464)
N9: (42.156,119.109,116.331)
O5': (45.549,120.885,119.359)
O3': (45.356,116.610,118.201)
OP2: (47.203,122.096,117.940)
C3': (44.514,117.640,117.725)
C1': (42.382,118.617,117.692)
C5': (45.677,119.752,118.496)
O4': (43.272,119.515,118.343)
C8: (42.853,120.095,115.677)
O2': (42.670,116.542,118.873)
C6: (40.496,119.210,113.242)
C5: (41.367,119.446,114.306)
C4: (41.197,118.678,115.443)
P: (46.612,122.066,119.304)
C4': (44.506,118.824,118.670)
C2': (43.049,117.242,117.705)
C2: (39.511,117.583,114.551)
N1: (39.556,118.254,113.399)
N3: (40.278,117.713,115.630)
N6: (40.553,119.879,112.089)
N7: (42.420,120.333,114.464)
N9: (42.156,119.109,116.331)
O5': (45.549,120.885,119.359)
O3': (45.356,116.610,118.201)
Image (generated by PyMOL):