ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A643:A737

Extra

PDB:
ATOM 1 O3' A A 642 27.656 90.087 56.481 1.00 39.10 O
ATOM 2 P U A 643 27.125 89.255 55.225 1.00 40.80 P
ATOM 3 OP1 U A 643 25.798 88.732 55.665 1.00 43.02 O
ATOM 4 OP2 U A 643 28.188 88.318 54.779 1.00 41.13 O
ATOM 5 O5' U A 643 26.944 90.355 54.090 1.00 39.17 O
ATOM 6 C5' U A 643 25.970 91.411 54.229 1.00 40.62 C
ATOM 7 C4' U A 643 26.134 92.413 53.112 1.00 41.86 C
ATOM 8 O4' U A 643 27.499 92.912 53.161 1.00 41.36 O
ATOM 9 C3' U A 643 26.017 91.877 51.689 1.00 42.18 C
ATOM 10 O3' U A 643 24.668 91.739 51.256 1.00 40.90 O
ATOM 11 C2' U A 643 26.784 92.933 50.899 1.00 40.79 C
ATOM 12 O2' U A 643 26.075 94.148 50.727 1.00 41.30 O
ATOM 13 C1' U A 643 27.948 93.203 51.847 1.00 39.20 C
ATOM 14 N1 U A 643 29.143 92.401 51.542 1.00 36.82 N
ATOM 15 C2 U A 643 29.991 92.917 50.593 1.00 37.27 C
ATOM 16 O2 U A 643 29.761 93.979 50.012 1.00 40.57 O
ATOM 17 N3 U A 643 31.113 92.162 50.338 1.00 35.37 N
ATOM 18 C4 U A 643 31.458 90.961 50.918 1.00 35.23 C
ATOM 19 O4 U A 643 32.517 90.412 50.589 1.00 36.15 O
ATOM 20 C5 U A 643 30.516 90.482 51.889 1.00 34.30 C
ATOM 21 C6 U A 643 29.420 91.204 52.161 1.00 34.63 C
ATOM 22 P G A 644 24.293 90.617 50.164 1.00 42.24 P
ATOM 23 OP1 G A 644 22.851 90.809 49.892 1.00 42.39 O
ATOM 24 OP2 G A 644 24.781 89.309 50.629 1.00 39.05 O
ATOM 25 O5' G A 644 25.083 91.048 48.845 1.00 41.30 O
TER

ATOM 1 O3' C B 736 39.577 94.133 42.152 1.00 41.59 O
ATOM 2 P A B 737 39.789 95.149 43.385 1.00 43.58 P
ATOM 3 OP1 A B 737 40.670 96.189 42.800 1.00 44.30 O
ATOM 4 OP2 A B 737 40.221 94.408 44.617 1.00 40.63 O
ATOM 5 O5' A B 737 38.348 95.780 43.644 1.00 40.17 O
ATOM 6 C5' A B 737 37.652 96.453 42.580 1.00 40.31 C
ATOM 7 C4' A B 737 36.195 96.644 42.922 1.00 41.11 C
ATOM 8 O4' A B 737 35.546 95.361 43.108 1.00 41.63 O
ATOM 9 C3' A B 737 35.918 97.360 44.223 1.00 41.85 C
ATOM 10 O3' A B 737 36.094 98.749 44.076 1.00 42.69 O
ATOM 11 C2' A B 737 34.483 96.947 44.500 1.00 41.81 C
ATOM 12 O2' A B 737 33.562 97.605 43.639 1.00 43.13 O
ATOM 13 C1' A B 737 34.544 95.473 44.107 1.00 41.55 C
ATOM 14 N9 A B 737 34.906 94.562 45.197 1.00 41.84 N
ATOM 15 C8 A B 737 36.105 93.892 45.369 1.00 41.56 C
ATOM 16 N7 A B 737 36.114 93.065 46.387 1.00 41.33 N
ATOM 17 C5 A B 737 34.841 93.200 46.931 1.00 42.83 C
ATOM 18 C6 A B 737 34.193 92.558 48.013 1.00 43.63 C
ATOM 19 N6 A B 737 34.740 91.576 48.727 1.00 43.97 N
ATOM 20 N1 A B 737 32.934 92.955 48.322 1.00 42.73 N
ATOM 21 C2 A B 737 32.358 93.905 47.573 1.00 43.30 C
ATOM 22 N3 A B 737 32.840 94.554 46.512 1.00 43.05 N
ATOM 23 C4 A B 737 34.102 94.151 46.235 1.00 42.49 C
ATOM 24 P U B 738 36.698 99.601 45.297 1.00 41.85 P
ATOM 25 OP1 U B 738 37.022 100.947 44.763 1.00 41.38 O
ATOM 26 OP2 U B 738 37.751 98.808 46.003 1.00 44.54 O
ATOM 27 O5' U B 738 35.490 99.693 46.320 1.00 39.72 O
TER

Atoms:
C4: (31.458,90.961,50.918)
N3: (31.113,92.162,50.338)
OP1: (25.798,88.732,55.665)
OP2: (28.188,88.318,54.779)
C2: (29.991,92.917,50.593)
C1': (27.948,93.203,51.847)
C3': (26.017,91.877,51.689)
O5': (26.944,90.355,54.090)
O4': (27.499,92.912,53.161)
C5': (25.970,91.411,54.229)
P: (27.125,89.255,55.225)
C4': (26.134,92.413,53.112)
C2': (26.784,92.933,50.899)
O2': (26.075,94.148,50.727)
N1: (29.143,92.401,51.542)
O4: (32.517,90.412,50.589)
O2: (29.761,93.979,50.012)
C6: (29.420,91.204,52.161)
C5: (30.516,90.482,51.889)
O3': (24.668,91.739,51.256)
OP1: (40.670,96.189,42.800)
OP2: (40.221,94.408,44.617)
C3': (35.918,97.360,44.223)
C1': (34.544,95.473,44.107)
C5': (37.652,96.453,42.580)
O4': (35.546,95.361,43.108)
C8: (36.105,93.892,45.369)
O2': (33.562,97.605,43.639)
C6: (34.193,92.558,48.013)
C5: (34.841,93.200,46.931)
C4: (34.102,94.151,46.235)
P: (39.789,95.149,43.385)
C4': (36.195,96.644,42.922)
C2': (34.483,96.947,44.500)
C2: (32.358,93.905,47.573)
N1: (32.934,92.955,48.322)
N3: (32.840,94.554,46.512)
N6: (34.740,91.576,48.727)
N7: (36.114,93.065,46.387)
N9: (34.906,94.562,45.197)
O5': (38.348,95.780,43.644)
O3': (36.094,98.749,44.076)
Image (generated by PyMOL):
PyMOL image
show in jmol