ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:02508:02659

Extra

PDB:
ATOM 1 O3' G A2507 22.778 162.096 123.008 1.00 67.78 O
ATOM 2 P U A2508 24.187 161.581 123.602 1.00 65.61 P
ATOM 3 OP1 U A2508 25.285 162.101 122.748 1.00 64.42 O
ATOM 4 OP2 U A2508 24.061 160.118 123.833 1.00 66.72 O
ATOM 5 O5' U A2508 24.311 162.299 125.015 1.00 64.16 O
ATOM 6 C5' U A2508 24.552 163.710 125.106 1.00 62.41 C
ATOM 7 C4' U A2508 24.522 164.140 126.548 1.00 62.30 C
ATOM 8 O4' U A2508 23.219 163.832 127.113 1.00 62.17 O
ATOM 9 C3' U A2508 25.486 163.396 127.452 1.00 61.60 C
ATOM 10 O3' U A2508 26.796 163.930 127.379 1.00 60.06 O
ATOM 11 C2' U A2508 24.846 163.570 128.819 1.00 61.90 C
ATOM 12 O2' U A2508 25.066 164.854 129.368 1.00 62.60 O
ATOM 13 C1' U A2508 23.366 163.430 128.465 1.00 61.86 C
ATOM 14 N1 U A2508 22.875 162.051 128.601 1.00 62.59 N
ATOM 15 C2 U A2508 22.502 161.628 129.864 1.00 63.46 C
ATOM 16 O2 U A2508 22.564 162.350 130.851 1.00 63.88 O
ATOM 17 N3 U A2508 22.054 160.329 129.930 1.00 62.99 N
ATOM 18 C4 U A2508 21.949 159.428 128.888 1.00 62.92 C
ATOM 19 O4 U A2508 21.560 158.280 129.113 1.00 63.05 O
ATOM 20 C5 U A2508 22.354 159.943 127.615 1.00 62.76 C
ATOM 21 C6 U A2508 22.790 161.203 127.517 1.00 62.60 C
ATOM 22 P G A2509 28.053 162.956 127.579 1.00 59.28 P
ATOM 23 OP1 G A2509 29.277 163.746 127.303 1.00 60.05 O
ATOM 24 OP2 G A2509 27.787 161.711 126.812 1.00 59.80 O
ATOM 25 O5' G A2509 28.029 162.605 129.130 1.00 57.94 O
TER

ATOM 1 O3' C B2658 17.534 154.780 139.269 1.00 62.18 O
ATOM 2 P A B2659 16.326 155.774 138.907 1.00 64.14 P
ATOM 3 OP1 A B2659 15.545 155.871 140.167 1.00 63.39 O
ATOM 4 OP2 A B2659 15.654 155.336 137.655 1.00 62.27 O
ATOM 5 O5' A B2659 17.036 157.173 138.637 1.00 61.96 O
ATOM 6 C5' A B2659 17.631 157.902 139.721 1.00 61.87 C
ATOM 7 C4' A B2659 18.401 159.085 139.199 1.00 62.24 C
ATOM 8 O4' A B2659 19.523 158.626 138.407 1.00 63.30 O
ATOM 9 C3' A B2659 17.651 160.006 138.255 1.00 62.23 C
ATOM 10 O3' A B2659 16.792 160.884 138.973 1.00 62.66 O
ATOM 11 C2' A B2659 18.799 160.711 137.535 1.00 62.13 C
ATOM 12 O2' A B2659 19.453 161.707 138.293 1.00 61.01 O
ATOM 13 C1' A B2659 19.789 159.561 137.371 1.00 62.74 C
ATOM 14 N9 A B2659 19.660 158.891 136.077 1.00 63.48 N
ATOM 15 C8 A B2659 19.058 157.692 135.775 1.00 63.17 C
ATOM 16 N7 A B2659 19.114 157.380 134.503 1.00 63.14 N
ATOM 17 C5 A B2659 19.799 158.442 133.930 1.00 63.43 C
ATOM 18 C6 A B2659 20.184 158.716 132.609 1.00 63.46 C
ATOM 19 N6 A B2659 19.934 157.906 131.583 1.00 65.30 N
ATOM 20 N1 A B2659 20.849 159.864 132.375 1.00 62.65 N
ATOM 21 C2 A B2659 21.110 160.674 133.405 1.00 63.03 C
ATOM 22 N3 A B2659 20.804 160.528 134.688 1.00 62.69 N
ATOM 23 C4 A B2659 20.140 159.378 134.887 1.00 63.16 C
ATOM 24 P C B2660 15.336 161.241 138.386 1.00 62.92 P
ATOM 25 OP1 C B2660 14.548 161.799 139.516 1.00 63.15 O
ATOM 26 OP2 C B2660 14.804 160.080 137.624 1.00 63.39 O
ATOM 27 O5' C B2660 15.623 162.436 137.374 1.00 62.13 O
TER

Atoms:
C4: (21.949,159.428,128.888)
N3: (22.054,160.329,129.930)
OP1: (25.285,162.101,122.748)
OP2: (24.061,160.118,123.833)
C2: (22.502,161.628,129.864)
C1': (23.366,163.430,128.465)
C3': (25.486,163.396,127.452)
O5': (24.311,162.299,125.015)
O4': (23.219,163.832,127.113)
C5': (24.552,163.710,125.106)
P: (24.187,161.581,123.602)
C4': (24.522,164.140,126.548)
C2': (24.846,163.570,128.819)
O2': (25.066,164.854,129.368)
N1: (22.875,162.051,128.601)
O4: (21.560,158.280,129.113)
O2: (22.564,162.350,130.851)
C6: (22.790,161.203,127.517)
C5: (22.354,159.943,127.615)
O3': (26.796,163.930,127.379)
OP1: (15.545,155.871,140.167)
OP2: (15.654,155.336,137.655)
C3': (17.651,160.006,138.255)
C1': (19.789,159.561,137.371)
C5': (17.631,157.902,139.721)
O4': (19.523,158.626,138.407)
C8: (19.058,157.692,135.775)
O2': (19.453,161.707,138.293)
C6: (20.184,158.716,132.609)
C5: (19.799,158.442,133.930)
C4: (20.140,159.378,134.887)
P: (16.326,155.774,138.907)
C4': (18.401,159.085,139.199)
C2': (18.799,160.711,137.535)
C2: (21.110,160.674,133.405)
N1: (20.849,159.864,132.375)
N3: (20.804,160.528,134.688)
N6: (19.934,157.906,131.583)
N7: (19.114,157.380,134.503)
N9: (19.660,158.891,136.077)
O5': (17.036,157.173,138.637)
O3': (16.792,160.884,138.973)
Image (generated by PyMOL):
PyMOL image
show in jmol