ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2PXD:B9:B39

Extra

PDB:
ATOM 1 O3' U A 8 108.900 -9.394 47.881 1.00 32.73 O
ATOM 2 P U A 9 107.580 -9.744 47.051 1.00 32.36 P
ATOM 3 OP1 U A 9 107.687 -8.986 45.786 1.00 23.37 O
ATOM 4 OP2 U A 9 106.389 -9.554 47.923 1.00 22.19 O
ATOM 5 O5' U A 9 107.785 -11.291 46.748 1.00 28.89 O
ATOM 6 C5' U A 9 108.804 -11.712 45.860 1.00 25.88 C
ATOM 7 C4' U A 9 108.823 -13.212 45.788 1.00 27.39 C
ATOM 8 O4' U A 9 109.168 -13.735 47.089 1.00 29.14 O
ATOM 9 C3' U A 9 107.488 -13.856 45.458 1.00 27.95 C
ATOM 10 O3' U A 9 107.412 -13.995 44.040 1.00 31.41 O
ATOM 11 C2' U A 9 107.621 -15.245 46.075 1.00 27.30 C
ATOM 12 O2' U A 9 108.238 -16.112 45.153 1.00 28.97 O
ATOM 13 C1' U A 9 108.580 -15.003 47.249 1.00 25.48 C
ATOM 14 N1 U A 9 108.005 -15.089 48.597 1.00 14.57 N
ATOM 15 C2 U A 9 108.054 -16.315 49.211 1.00 12.37 C
ATOM 16 O2 U A 9 108.536 -17.287 48.675 1.00 13.82 O
ATOM 17 N3 U A 9 107.530 -16.358 50.469 1.00 9.72 N
ATOM 18 C4 U A 9 106.971 -15.314 51.162 1.00 12.03 C
ATOM 19 O4 U A 9 106.563 -15.504 52.307 1.00 14.01 O
ATOM 20 C5 U A 9 106.949 -14.071 50.460 1.00 9.92 C
ATOM 21 C6 U A 9 107.454 -14.003 49.230 1.00 11.28 C
ATOM 22 P A A 10 106.192 -13.337 43.217 1.00 25.44 P
ATOM 23 OP1 A A 10 106.567 -13.414 41.777 1.00 24.74 O
ATOM 24 OP2 A A 10 105.872 -12.005 43.827 1.00 23.76 O
ATOM 25 O5' A A 10 104.987 -14.345 43.459 1.00 22.91 O
TER

ATOM 1 O3' A B 38 106.060 -24.278 58.495 1.00 39.42 O
ATOM 2 P A B 39 107.548 -23.691 58.681 1.00 45.78 P
ATOM 3 OP1 A B 39 108.250 -24.656 59.555 1.00 34.48 O
ATOM 4 OP2 A B 39 107.488 -22.256 59.066 1.00 32.37 O
ATOM 5 O5' A B 39 108.206 -23.796 57.239 1.00 45.52 O
ATOM 6 C5' A B 39 108.618 -25.051 56.718 1.00 44.69 C
ATOM 7 C4' A B 39 109.085 -24.887 55.296 1.00 43.49 C
ATOM 8 O4' A B 39 107.987 -24.378 54.491 1.00 43.99 O
ATOM 9 C3' A B 39 110.161 -23.841 55.112 1.00 43.46 C
ATOM 10 O3' A B 39 111.430 -24.395 55.383 1.00 44.44 O
ATOM 11 C2' A B 39 110.001 -23.496 53.644 1.00 42.52 C
ATOM 12 O2' A B 39 110.506 -24.528 52.825 1.00 40.60 O
ATOM 13 C1' A B 39 108.478 -23.454 53.531 1.00 40.93 C
ATOM 14 N9 A B 39 107.923 -22.139 53.853 1.00 23.09 N
ATOM 15 C8 A B 39 107.299 -21.771 55.014 1.00 21.22 C
ATOM 16 N7 A B 39 106.932 -20.514 55.040 1.00 20.54 N
ATOM 17 C5 A B 39 107.338 -20.025 53.810 1.00 18.77 C
ATOM 18 C6 A B 39 107.244 -18.756 53.233 1.00 18.93 C
ATOM 19 N6 A B 39 106.691 -17.712 53.850 1.00 18.32 N
ATOM 20 N1 A B 39 107.738 -18.590 51.985 1.00 19.81 N
ATOM 21 C2 A B 39 108.281 -19.651 51.372 1.00 21.72 C
ATOM 22 N3 A B 39 108.427 -20.902 51.820 1.00 21.30 N
ATOM 23 C4 A B 39 107.934 -21.018 53.062 1.00 19.70 C
ATOM 24 P G B 40 112.613 -23.440 55.884 1.00 36.41 P
ATOM 25 OP1 G B 40 113.707 -24.345 56.318 1.00 33.45 O
ATOM 26 OP2 G B 40 112.049 -22.443 56.829 1.00 33.02 O
ATOM 27 O5' G B 40 113.059 -22.662 54.574 1.00 33.37 O
TER

Atoms:
C4: (106.971,-15.314,51.162)
N3: (107.530,-16.358,50.469)
OP1: (107.687,-8.986,45.786)
OP2: (106.389,-9.554,47.923)
C2: (108.054,-16.315,49.211)
C1': (108.580,-15.003,47.249)
C3': (107.488,-13.856,45.458)
O5': (107.785,-11.291,46.748)
O4': (109.168,-13.735,47.089)
C5': (108.804,-11.712,45.860)
P: (107.580,-9.744,47.051)
C4': (108.823,-13.212,45.788)
C2': (107.621,-15.245,46.075)
O2': (108.238,-16.112,45.153)
N1: (108.005,-15.089,48.597)
O4: (106.563,-15.504,52.307)
O2: (108.536,-17.287,48.675)
C6: (107.454,-14.003,49.230)
C5: (106.949,-14.071,50.460)
O3': (107.412,-13.995,44.040)
OP1: (108.250,-24.656,59.555)
OP2: (107.488,-22.256,59.066)
C3': (110.161,-23.841,55.112)
C1': (108.478,-23.454,53.531)
C5': (108.618,-25.051,56.718)
O4': (107.987,-24.378,54.491)
C8: (107.299,-21.771,55.014)
O2': (110.506,-24.528,52.825)
C6: (107.244,-18.756,53.233)
C5: (107.338,-20.025,53.810)
C4: (107.934,-21.018,53.062)
P: (107.548,-23.691,58.681)
C4': (109.085,-24.887,55.296)
C2': (110.001,-23.496,53.644)
C2: (108.281,-19.651,51.372)
N1: (107.738,-18.590,51.985)
N3: (108.427,-20.902,51.820)
N6: (106.691,-17.712,53.850)
N7: (106.932,-20.514,55.040)
N9: (107.923,-22.139,53.853)
O5': (108.206,-23.796,57.239)
O3': (111.430,-24.395,55.383)
Image (generated by PyMOL):
PyMOL image
show in jmol