Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11004:1933
Extra
PDB:
ATOM 1 O3' G A1003 50.097 -49.943 38.425 1.00 43.56 O
ATOM 2 P U A1004 51.689 -50.145 38.270 1.00 39.97 P
ATOM 3 OP1 U A1004 52.215 -50.403 39.622 1.00 39.83 O
ATOM 4 OP2 U A1004 52.202 -48.961 37.503 1.00 39.81 O
ATOM 5 O5' U A1004 51.822 -51.455 37.388 1.00 40.50 O
ATOM 6 C5' U A1004 51.766 -52.707 37.998 1.00 40.75 C
ATOM 7 C4' U A1004 51.855 -53.793 36.992 1.00 41.25 C
ATOM 8 O4' U A1004 50.921 -53.534 35.924 1.00 41.35 O
ATOM 9 C3' U A1004 53.180 -53.924 36.274 1.00 41.48 C
ATOM 10 O3' U A1004 54.165 -54.552 37.059 1.00 41.56 O
ATOM 11 C2' U A1004 52.784 -54.712 35.046 1.00 41.94 C
ATOM 12 O2' U A1004 52.546 -56.062 35.396 1.00 42.28 O
ATOM 13 C1' U A1004 51.444 -54.048 34.716 1.00 41.76 C
ATOM 14 N1 U A1004 51.614 -52.931 33.809 1.00 41.62 N
ATOM 15 C2 U A1004 51.785 -53.287 32.518 1.00 42.01 C
ATOM 16 O2 U A1004 51.805 -54.426 32.188 1.00 42.42 O
ATOM 17 N3 U A1004 51.947 -52.287 31.645 1.00 41.91 N
ATOM 18 C4 U A1004 51.956 -50.977 32.014 1.00 41.46 C
ATOM 19 O4 U A1004 52.118 -50.191 31.105 1.00 41.45 O
ATOM 20 C5 U A1004 51.741 -50.660 33.403 1.00 41.07 C
ATOM 21 C6 U A1004 51.584 -51.638 34.270 1.00 41.15 C
ATOM 22 P A A1005 55.721 -54.281 36.773 1.00 46.38 P
ATOM 23 OP1 A A1005 56.484 -55.050 37.797 1.00 46.47 O
ATOM 24 OP2 A A1005 55.910 -52.813 36.684 1.00 45.97 O
ATOM 25 O5' A A1005 55.922 -54.928 35.348 1.00 46.86 O
TER
ATOM 1 O3' U B 932 54.828 -52.301 19.935 1.00 50.52 O
ATOM 2 P A B 933 53.205 -52.386 19.816 1.00 55.97 P
ATOM 3 OP1 A B 933 52.878 -52.573 18.357 1.00 56.45 O
ATOM 4 OP2 A B 933 52.645 -51.190 20.533 1.00 55.40 O
ATOM 5 O5' A B 933 52.849 -53.716 20.642 1.00 56.11 O
ATOM 6 C5' A B 933 53.807 -54.725 20.863 1.00 56.39 C
ATOM 7 C4' A B 933 53.545 -55.438 22.151 1.00 56.23 C
ATOM 8 O4' A B 933 54.231 -54.766 23.239 1.00 55.74 O
ATOM 9 C3' A B 933 52.106 -55.474 22.622 1.00 56.06 C
ATOM 10 O3' A B 933 51.317 -56.422 21.925 1.00 56.54 O
ATOM 11 C2' A B 933 52.270 -55.793 24.103 1.00 55.76 C
ATOM 12 O2' A B 933 52.502 -57.178 24.288 1.00 56.16 O
ATOM 13 C1' A B 933 53.556 -55.026 24.451 1.00 55.47 C
ATOM 14 N9 A B 933 53.268 -53.742 25.127 1.00 54.89 N
ATOM 15 C8 A B 933 53.053 -52.498 24.576 1.00 54.66 C
ATOM 16 N7 A B 933 52.807 -51.574 25.490 1.00 54.15 N
ATOM 17 C5 A B 933 52.874 -52.255 26.700 1.00 54.03 C
ATOM 18 C6 A B 933 52.700 -51.860 28.024 1.00 53.59 C
ATOM 19 N6 A B 933 52.425 -50.614 28.385 1.00 53.14 N
ATOM 20 N1 A B 933 52.814 -52.780 28.987 1.00 53.62 N
ATOM 21 C2 A B 933 53.092 -54.023 28.640 1.00 54.09 C
ATOM 22 N3 A B 933 53.273 -54.520 27.429 1.00 54.54 N
ATOM 23 C4 A B 933 53.148 -53.577 26.493 1.00 54.48 C
ATOM 24 P U B 934 49.702 -56.291 21.880 1.00 54.21 P
ATOM 25 OP1 U B 934 49.197 -57.484 21.174 1.00 54.79 O
ATOM 26 OP2 U B 934 49.370 -54.946 21.351 1.00 53.94 O
ATOM 27 O5' U B 934 49.301 -56.401 23.389 1.00 53.81 O
TER
ATOM 2 P U A1004 51.689 -50.145 38.270 1.00 39.97 P
ATOM 3 OP1 U A1004 52.215 -50.403 39.622 1.00 39.83 O
ATOM 4 OP2 U A1004 52.202 -48.961 37.503 1.00 39.81 O
ATOM 5 O5' U A1004 51.822 -51.455 37.388 1.00 40.50 O
ATOM 6 C5' U A1004 51.766 -52.707 37.998 1.00 40.75 C
ATOM 7 C4' U A1004 51.855 -53.793 36.992 1.00 41.25 C
ATOM 8 O4' U A1004 50.921 -53.534 35.924 1.00 41.35 O
ATOM 9 C3' U A1004 53.180 -53.924 36.274 1.00 41.48 C
ATOM 10 O3' U A1004 54.165 -54.552 37.059 1.00 41.56 O
ATOM 11 C2' U A1004 52.784 -54.712 35.046 1.00 41.94 C
ATOM 12 O2' U A1004 52.546 -56.062 35.396 1.00 42.28 O
ATOM 13 C1' U A1004 51.444 -54.048 34.716 1.00 41.76 C
ATOM 14 N1 U A1004 51.614 -52.931 33.809 1.00 41.62 N
ATOM 15 C2 U A1004 51.785 -53.287 32.518 1.00 42.01 C
ATOM 16 O2 U A1004 51.805 -54.426 32.188 1.00 42.42 O
ATOM 17 N3 U A1004 51.947 -52.287 31.645 1.00 41.91 N
ATOM 18 C4 U A1004 51.956 -50.977 32.014 1.00 41.46 C
ATOM 19 O4 U A1004 52.118 -50.191 31.105 1.00 41.45 O
ATOM 20 C5 U A1004 51.741 -50.660 33.403 1.00 41.07 C
ATOM 21 C6 U A1004 51.584 -51.638 34.270 1.00 41.15 C
ATOM 22 P A A1005 55.721 -54.281 36.773 1.00 46.38 P
ATOM 23 OP1 A A1005 56.484 -55.050 37.797 1.00 46.47 O
ATOM 24 OP2 A A1005 55.910 -52.813 36.684 1.00 45.97 O
ATOM 25 O5' A A1005 55.922 -54.928 35.348 1.00 46.86 O
TER
ATOM 1 O3' U B 932 54.828 -52.301 19.935 1.00 50.52 O
ATOM 2 P A B 933 53.205 -52.386 19.816 1.00 55.97 P
ATOM 3 OP1 A B 933 52.878 -52.573 18.357 1.00 56.45 O
ATOM 4 OP2 A B 933 52.645 -51.190 20.533 1.00 55.40 O
ATOM 5 O5' A B 933 52.849 -53.716 20.642 1.00 56.11 O
ATOM 6 C5' A B 933 53.807 -54.725 20.863 1.00 56.39 C
ATOM 7 C4' A B 933 53.545 -55.438 22.151 1.00 56.23 C
ATOM 8 O4' A B 933 54.231 -54.766 23.239 1.00 55.74 O
ATOM 9 C3' A B 933 52.106 -55.474 22.622 1.00 56.06 C
ATOM 10 O3' A B 933 51.317 -56.422 21.925 1.00 56.54 O
ATOM 11 C2' A B 933 52.270 -55.793 24.103 1.00 55.76 C
ATOM 12 O2' A B 933 52.502 -57.178 24.288 1.00 56.16 O
ATOM 13 C1' A B 933 53.556 -55.026 24.451 1.00 55.47 C
ATOM 14 N9 A B 933 53.268 -53.742 25.127 1.00 54.89 N
ATOM 15 C8 A B 933 53.053 -52.498 24.576 1.00 54.66 C
ATOM 16 N7 A B 933 52.807 -51.574 25.490 1.00 54.15 N
ATOM 17 C5 A B 933 52.874 -52.255 26.700 1.00 54.03 C
ATOM 18 C6 A B 933 52.700 -51.860 28.024 1.00 53.59 C
ATOM 19 N6 A B 933 52.425 -50.614 28.385 1.00 53.14 N
ATOM 20 N1 A B 933 52.814 -52.780 28.987 1.00 53.62 N
ATOM 21 C2 A B 933 53.092 -54.023 28.640 1.00 54.09 C
ATOM 22 N3 A B 933 53.273 -54.520 27.429 1.00 54.54 N
ATOM 23 C4 A B 933 53.148 -53.577 26.493 1.00 54.48 C
ATOM 24 P U B 934 49.702 -56.291 21.880 1.00 54.21 P
ATOM 25 OP1 U B 934 49.197 -57.484 21.174 1.00 54.79 O
ATOM 26 OP2 U B 934 49.370 -54.946 21.351 1.00 53.94 O
ATOM 27 O5' U B 934 49.301 -56.401 23.389 1.00 53.81 O
TER
Atoms:
C4: (51.956,-50.977,32.014)
N3: (51.947,-52.287,31.645)
OP1: (52.215,-50.403,39.622)
OP2: (52.202,-48.961,37.503)
C2: (51.785,-53.287,32.518)
C1': (51.444,-54.048,34.716)
C3': (53.180,-53.924,36.274)
O5': (51.822,-51.455,37.388)
O4': (50.921,-53.534,35.924)
C5': (51.766,-52.707,37.998)
P: (51.689,-50.145,38.270)
C4': (51.855,-53.793,36.992)
C2': (52.784,-54.712,35.046)
O2': (52.546,-56.062,35.396)
N1: (51.614,-52.931,33.809)
O4: (52.118,-50.191,31.105)
O2: (51.805,-54.426,32.188)
C6: (51.584,-51.638,34.270)
C5: (51.741,-50.660,33.403)
O3': (54.165,-54.552,37.059)
N3: (51.947,-52.287,31.645)
OP1: (52.215,-50.403,39.622)
OP2: (52.202,-48.961,37.503)
C2: (51.785,-53.287,32.518)
C1': (51.444,-54.048,34.716)
C3': (53.180,-53.924,36.274)
O5': (51.822,-51.455,37.388)
O4': (50.921,-53.534,35.924)
C5': (51.766,-52.707,37.998)
P: (51.689,-50.145,38.270)
C4': (51.855,-53.793,36.992)
C2': (52.784,-54.712,35.046)
O2': (52.546,-56.062,35.396)
N1: (51.614,-52.931,33.809)
O4: (52.118,-50.191,31.105)
O2: (51.805,-54.426,32.188)
C6: (51.584,-51.638,34.270)
C5: (51.741,-50.660,33.403)
O3': (54.165,-54.552,37.059)
OP1: (52.878,-52.573,18.357)
OP2: (52.645,-51.190,20.533)
C3': (52.106,-55.474,22.622)
C1': (53.556,-55.026,24.451)
C5': (53.807,-54.725,20.863)
O4': (54.231,-54.766,23.239)
C8: (53.053,-52.498,24.576)
O2': (52.502,-57.178,24.288)
C6: (52.700,-51.860,28.024)
C5: (52.874,-52.255,26.700)
C4: (53.148,-53.577,26.493)
P: (53.205,-52.386,19.816)
C4': (53.545,-55.438,22.151)
C2': (52.270,-55.793,24.103)
C2: (53.092,-54.023,28.640)
N1: (52.814,-52.780,28.987)
N3: (53.273,-54.520,27.429)
N6: (52.425,-50.614,28.385)
N7: (52.807,-51.574,25.490)
N9: (53.268,-53.742,25.127)
O5': (52.849,-53.716,20.642)
O3': (51.317,-56.422,21.925)
OP2: (52.645,-51.190,20.533)
C3': (52.106,-55.474,22.622)
C1': (53.556,-55.026,24.451)
C5': (53.807,-54.725,20.863)
O4': (54.231,-54.766,23.239)
C8: (53.053,-52.498,24.576)
O2': (52.502,-57.178,24.288)
C6: (52.700,-51.860,28.024)
C5: (52.874,-52.255,26.700)
C4: (53.148,-53.577,26.493)
P: (53.205,-52.386,19.816)
C4': (53.545,-55.438,22.151)
C2': (52.270,-55.793,24.103)
C2: (53.092,-54.023,28.640)
N1: (52.814,-52.780,28.987)
N3: (53.273,-54.520,27.429)
N6: (52.425,-50.614,28.385)
N7: (52.807,-51.574,25.490)
N9: (53.268,-53.742,25.127)
O5': (52.849,-53.716,20.642)
O3': (51.317,-56.422,21.925)
Image (generated by PyMOL):