Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3GER:A5:A61
Extra
PDB:
ATOM 1 O3' A A 4 7.064 -1.409 1.763 1.00 37.78 O
ATOM 2 P U A 5 8.248 -0.437 1.281 1.00 37.15 P
ATOM 3 OP1 U A 5 8.661 -0.839 -0.090 1.00 36.88 O
ATOM 4 OP2 U A 5 9.254 -0.399 2.372 1.00 36.98 O
ATOM 5 O5' U A 5 7.552 0.993 1.182 1.00 35.20 O
ATOM 6 C5' U A 5 6.466 1.198 0.285 1.00 32.99 C
ATOM 7 C4' U A 5 5.927 2.606 0.397 1.00 31.37 C
ATOM 8 O4' U A 5 5.247 2.756 1.674 1.00 30.30 O
ATOM 9 C3' U A 5 6.974 3.710 0.422 1.00 30.39 C
ATOM 10 O3' U A 5 7.400 4.073 -0.882 1.00 28.72 O
ATOM 11 C2' U A 5 6.221 4.846 1.100 1.00 30.28 C
ATOM 12 O2' U A 5 5.343 5.529 0.226 1.00 30.68 O
ATOM 13 C1' U A 5 5.408 4.085 2.143 1.00 29.66 C
ATOM 14 N1 U A 5 6.064 4.070 3.457 1.00 29.59 N
ATOM 15 C2 U A 5 5.821 5.151 4.278 1.00 29.16 C
ATOM 16 O2 U A 5 5.101 6.074 3.949 1.00 28.55 O
ATOM 17 N3 U A 5 6.457 5.115 5.494 1.00 29.11 N
ATOM 18 C4 U A 5 7.298 4.128 5.961 1.00 28.96 C
ATOM 19 O4 U A 5 7.797 4.243 7.083 1.00 28.68 O
ATOM 20 C5 U A 5 7.500 3.037 5.051 1.00 29.06 C
ATOM 21 C6 U A 5 6.888 3.046 3.858 1.00 29.11 C
ATOM 22 P A A 6 8.884 4.650 -1.098 1.00 28.45 P
ATOM 23 OP1 A A 6 9.013 5.027 -2.529 1.00 28.09 O
ATOM 24 OP2 A A 6 9.839 3.679 -0.506 1.00 28.21 O
ATOM 25 O5' A A 6 8.916 5.982 -0.219 1.00 26.70 O
TER
ATOM 1 O3' U B 60 5.294 12.980 14.329 1.00 29.47 O
ATOM 2 P A B 61 3.878 12.221 14.259 1.00 30.19 P
ATOM 3 OP1 A B 61 2.885 13.072 14.963 1.00 29.89 O
ATOM 4 OP2 A B 61 4.066 10.812 14.682 1.00 29.67 O
ATOM 5 O5' A B 61 3.525 12.210 12.707 1.00 30.07 O
ATOM 6 C5' A B 61 3.365 13.429 11.994 1.00 29.57 C
ATOM 7 C4' A B 61 3.046 13.154 10.543 1.00 29.66 C
ATOM 8 O4' A B 61 4.259 12.741 9.856 1.00 28.92 O
ATOM 9 C3' A B 61 2.074 12.014 10.286 1.00 30.14 C
ATOM 10 O3' A B 61 0.724 12.434 10.426 1.00 32.43 O
ATOM 11 C2' A B 61 2.420 11.626 8.854 1.00 29.28 C
ATOM 12 O2' A B 61 1.888 12.534 7.912 1.00 29.37 O
ATOM 13 C1' A B 61 3.941 11.770 8.868 1.00 28.28 C
ATOM 14 N9 A B 61 4.614 10.517 9.208 1.00 27.16 N
ATOM 15 C8 A B 61 4.983 10.060 10.449 1.00 26.66 C
ATOM 16 N7 A B 61 5.556 8.880 10.429 1.00 26.51 N
ATOM 17 C5 A B 61 5.571 8.539 9.083 1.00 26.35 C
ATOM 18 C6 A B 61 6.049 7.407 8.396 1.00 26.04 C
ATOM 19 N6 A B 61 6.633 6.362 8.996 1.00 25.94 N
ATOM 20 N1 A B 61 5.907 7.383 7.053 1.00 26.09 N
ATOM 21 C2 A B 61 5.330 8.430 6.450 1.00 26.09 C
ATOM 22 N3 A B 61 4.846 9.548 6.983 1.00 26.38 N
ATOM 23 C4 A B 61 4.997 9.540 8.319 1.00 26.82 C
ATOM 24 P U B 62 -0.378 11.393 10.960 1.00 33.49 P
ATOM 25 OP1 U B 62 -1.630 12.148 11.218 1.00 34.35 O
ATOM 26 OP2 U B 62 0.222 10.581 12.048 1.00 33.26 O
ATOM 27 O5' U B 62 -0.620 10.429 9.718 1.00 34.39 O
TER
ATOM 2 P U A 5 8.248 -0.437 1.281 1.00 37.15 P
ATOM 3 OP1 U A 5 8.661 -0.839 -0.090 1.00 36.88 O
ATOM 4 OP2 U A 5 9.254 -0.399 2.372 1.00 36.98 O
ATOM 5 O5' U A 5 7.552 0.993 1.182 1.00 35.20 O
ATOM 6 C5' U A 5 6.466 1.198 0.285 1.00 32.99 C
ATOM 7 C4' U A 5 5.927 2.606 0.397 1.00 31.37 C
ATOM 8 O4' U A 5 5.247 2.756 1.674 1.00 30.30 O
ATOM 9 C3' U A 5 6.974 3.710 0.422 1.00 30.39 C
ATOM 10 O3' U A 5 7.400 4.073 -0.882 1.00 28.72 O
ATOM 11 C2' U A 5 6.221 4.846 1.100 1.00 30.28 C
ATOM 12 O2' U A 5 5.343 5.529 0.226 1.00 30.68 O
ATOM 13 C1' U A 5 5.408 4.085 2.143 1.00 29.66 C
ATOM 14 N1 U A 5 6.064 4.070 3.457 1.00 29.59 N
ATOM 15 C2 U A 5 5.821 5.151 4.278 1.00 29.16 C
ATOM 16 O2 U A 5 5.101 6.074 3.949 1.00 28.55 O
ATOM 17 N3 U A 5 6.457 5.115 5.494 1.00 29.11 N
ATOM 18 C4 U A 5 7.298 4.128 5.961 1.00 28.96 C
ATOM 19 O4 U A 5 7.797 4.243 7.083 1.00 28.68 O
ATOM 20 C5 U A 5 7.500 3.037 5.051 1.00 29.06 C
ATOM 21 C6 U A 5 6.888 3.046 3.858 1.00 29.11 C
ATOM 22 P A A 6 8.884 4.650 -1.098 1.00 28.45 P
ATOM 23 OP1 A A 6 9.013 5.027 -2.529 1.00 28.09 O
ATOM 24 OP2 A A 6 9.839 3.679 -0.506 1.00 28.21 O
ATOM 25 O5' A A 6 8.916 5.982 -0.219 1.00 26.70 O
TER
ATOM 1 O3' U B 60 5.294 12.980 14.329 1.00 29.47 O
ATOM 2 P A B 61 3.878 12.221 14.259 1.00 30.19 P
ATOM 3 OP1 A B 61 2.885 13.072 14.963 1.00 29.89 O
ATOM 4 OP2 A B 61 4.066 10.812 14.682 1.00 29.67 O
ATOM 5 O5' A B 61 3.525 12.210 12.707 1.00 30.07 O
ATOM 6 C5' A B 61 3.365 13.429 11.994 1.00 29.57 C
ATOM 7 C4' A B 61 3.046 13.154 10.543 1.00 29.66 C
ATOM 8 O4' A B 61 4.259 12.741 9.856 1.00 28.92 O
ATOM 9 C3' A B 61 2.074 12.014 10.286 1.00 30.14 C
ATOM 10 O3' A B 61 0.724 12.434 10.426 1.00 32.43 O
ATOM 11 C2' A B 61 2.420 11.626 8.854 1.00 29.28 C
ATOM 12 O2' A B 61 1.888 12.534 7.912 1.00 29.37 O
ATOM 13 C1' A B 61 3.941 11.770 8.868 1.00 28.28 C
ATOM 14 N9 A B 61 4.614 10.517 9.208 1.00 27.16 N
ATOM 15 C8 A B 61 4.983 10.060 10.449 1.00 26.66 C
ATOM 16 N7 A B 61 5.556 8.880 10.429 1.00 26.51 N
ATOM 17 C5 A B 61 5.571 8.539 9.083 1.00 26.35 C
ATOM 18 C6 A B 61 6.049 7.407 8.396 1.00 26.04 C
ATOM 19 N6 A B 61 6.633 6.362 8.996 1.00 25.94 N
ATOM 20 N1 A B 61 5.907 7.383 7.053 1.00 26.09 N
ATOM 21 C2 A B 61 5.330 8.430 6.450 1.00 26.09 C
ATOM 22 N3 A B 61 4.846 9.548 6.983 1.00 26.38 N
ATOM 23 C4 A B 61 4.997 9.540 8.319 1.00 26.82 C
ATOM 24 P U B 62 -0.378 11.393 10.960 1.00 33.49 P
ATOM 25 OP1 U B 62 -1.630 12.148 11.218 1.00 34.35 O
ATOM 26 OP2 U B 62 0.222 10.581 12.048 1.00 33.26 O
ATOM 27 O5' U B 62 -0.620 10.429 9.718 1.00 34.39 O
TER
Atoms:
C4: (7.298,4.128,5.961)
N3: (6.457,5.115,5.494)
OP1: (8.661,-0.839,-0.090)
OP2: (9.254,-0.399,2.372)
C2: (5.821,5.151,4.278)
C1': (5.408,4.085,2.143)
C3': (6.974,3.710,0.422)
O5': (7.552,0.993,1.182)
O4': (5.247,2.756,1.674)
C5': (6.466,1.198,0.285)
P: (8.248,-0.437,1.281)
C4': (5.927,2.606,0.397)
C2': (6.221,4.846,1.100)
O2': (5.343,5.529,0.226)
N1: (6.064,4.070,3.457)
O4: (7.797,4.243,7.083)
O2: (5.101,6.074,3.949)
C6: (6.888,3.046,3.858)
C5: (7.500,3.037,5.051)
O3': (7.400,4.073,-0.882)
N3: (6.457,5.115,5.494)
OP1: (8.661,-0.839,-0.090)
OP2: (9.254,-0.399,2.372)
C2: (5.821,5.151,4.278)
C1': (5.408,4.085,2.143)
C3': (6.974,3.710,0.422)
O5': (7.552,0.993,1.182)
O4': (5.247,2.756,1.674)
C5': (6.466,1.198,0.285)
P: (8.248,-0.437,1.281)
C4': (5.927,2.606,0.397)
C2': (6.221,4.846,1.100)
O2': (5.343,5.529,0.226)
N1: (6.064,4.070,3.457)
O4: (7.797,4.243,7.083)
O2: (5.101,6.074,3.949)
C6: (6.888,3.046,3.858)
C5: (7.500,3.037,5.051)
O3': (7.400,4.073,-0.882)
OP1: (2.885,13.072,14.963)
OP2: (4.066,10.812,14.682)
C3': (2.074,12.014,10.286)
C1': (3.941,11.770,8.868)
C5': (3.365,13.429,11.994)
O4': (4.259,12.741,9.856)
C8: (4.983,10.060,10.449)
O2': (1.888,12.534,7.912)
C6: (6.049,7.407,8.396)
C5: (5.571,8.539,9.083)
C4: (4.997,9.540,8.319)
P: (3.878,12.221,14.259)
C4': (3.046,13.154,10.543)
C2': (2.420,11.626,8.854)
C2: (5.330,8.430,6.450)
N1: (5.907,7.383,7.053)
N3: (4.846,9.548,6.983)
N6: (6.633,6.362,8.996)
N7: (5.556,8.880,10.429)
N9: (4.614,10.517,9.208)
O5': (3.525,12.210,12.707)
O3': (0.724,12.434,10.426)
OP2: (4.066,10.812,14.682)
C3': (2.074,12.014,10.286)
C1': (3.941,11.770,8.868)
C5': (3.365,13.429,11.994)
O4': (4.259,12.741,9.856)
C8: (4.983,10.060,10.449)
O2': (1.888,12.534,7.912)
C6: (6.049,7.407,8.396)
C5: (5.571,8.539,9.083)
C4: (4.997,9.540,8.319)
P: (3.878,12.221,14.259)
C4': (3.046,13.154,10.543)
C2': (2.420,11.626,8.854)
C2: (5.330,8.430,6.450)
N1: (5.907,7.383,7.053)
N3: (4.846,9.548,6.983)
N6: (6.633,6.362,8.996)
N7: (5.556,8.880,10.429)
N9: (4.614,10.517,9.208)
O5': (3.525,12.210,12.707)
O3': (0.724,12.434,10.426)
Image (generated by PyMOL):