ClaRNA

Doublet info:

Details

Nucleotide types: AC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1869:12222

Extra

PDB:
ATOM 1 O3' G A 868 25.702 -4.419 90.591 1.00 38.18 O
ATOM 2 P A A 869 27.205 -4.582 91.159 1.00 41.47 P
ATOM 3 OP1 A A 869 28.099 -3.637 90.369 1.00 41.34 O
ATOM 4 OP2 A A 869 27.497 -6.001 91.158 1.00 41.40 O
ATOM 5 O5' A A 869 27.074 -4.087 92.635 1.00 41.73 O
ATOM 6 C5' A A 869 27.716 -2.911 93.073 1.00 41.82 C
ATOM 7 C4' A A 869 28.081 -3.042 94.514 1.00 42.04 C
ATOM 8 O4' A A 869 26.937 -3.614 95.262 1.00 42.20 O
ATOM 9 C3' A A 869 29.221 -3.990 94.755 1.00 41.99 C
ATOM 10 O3' A A 869 29.838 -3.619 95.969 1.00 42.20 O
ATOM 11 C2' A A 869 28.472 -5.311 94.921 1.00 42.00 C
ATOM 12 O2' A A 869 29.192 -6.364 95.489 1.00 42.03 O
ATOM 13 C1' A A 869 27.323 -4.881 95.793 1.00 42.22 C
ATOM 14 N9 A A 869 26.189 -5.796 95.734 1.00 42.24 N
ATOM 15 C8 A A 869 25.783 -6.391 94.596 1.00 42.04 C
ATOM 16 N7 A A 869 24.782 -7.183 94.755 1.00 42.10 N
ATOM 17 C5 A A 869 24.478 -7.116 96.083 1.00 42.36 C
ATOM 18 C6 A A 869 23.486 -7.727 96.840 1.00 42.54 C
ATOM 19 N6 A A 869 22.562 -8.554 96.395 1.00 42.50 N
ATOM 20 N1 A A 869 23.476 -7.449 98.135 1.00 42.79 N
ATOM 21 C2 A A 869 24.373 -6.597 98.634 1.00 42.86 C
ATOM 22 N3 A A 869 25.353 -5.968 98.016 1.00 42.70 N
ATOM 23 C4 A A 869 25.358 -6.272 96.713 1.00 42.45 C
ATOM 24 P A A 870 31.422 -3.474 96.072 1.00 36.55 P
ATOM 25 OP1 A A 870 31.959 -3.574 94.731 1.00 36.28 O
ATOM 26 OP2 A A 870 31.853 -4.436 97.062 1.00 36.68 O
ATOM 27 O5' A A 870 31.615 -2.014 96.633 1.00 36.72 O
TER

ATOM 1 O3' G B2221 22.118 -8.842 91.804 1.00 34.69 O
ATOM 2 P C B2222 21.578 -10.134 92.543 1.00 35.64 P
ATOM 3 OP1 C B2222 21.390 -9.783 93.935 1.00 35.88 O
ATOM 4 OP2 C B2222 22.486 -11.266 92.226 1.00 35.52 O
ATOM 5 O5' C B2222 20.178 -10.361 91.831 1.00 35.64 O
ATOM 6 C5' C B2222 19.333 -9.308 91.483 1.00 35.67 C
ATOM 7 C4' C B2222 18.493 -9.657 90.278 1.00 35.57 C
ATOM 8 O4' C B2222 19.350 -9.831 89.128 1.00 35.33 O
ATOM 9 C3' C B2222 17.730 -10.974 90.279 1.00 35.63 C
ATOM 10 O3' C B2222 16.610 -11.004 91.115 1.00 35.86 O
ATOM 11 C2' C B2222 17.368 -11.096 88.805 1.00 35.47 C
ATOM 12 O2' C B2222 16.350 -10.163 88.455 1.00 35.53 O
ATOM 13 C1' C B2222 18.673 -10.642 88.161 1.00 35.26 C
ATOM 14 N1 C B2222 19.495 -11.777 87.863 1.00 35.15 N
ATOM 15 C2 C B2222 19.120 -12.609 86.823 1.00 35.07 C
ATOM 16 O2 C B2222 18.158 -12.318 86.134 1.00 35.08 O
ATOM 17 N3 C B2222 19.851 -13.711 86.587 1.00 34.99 N
ATOM 18 C4 C B2222 20.849 -13.967 87.401 1.00 35.00 C
ATOM 19 N4 C B2222 21.556 -15.014 87.175 1.00 34.94 N
ATOM 20 C5 C B2222 21.219 -13.143 88.467 1.00 35.10 C
ATOM 21 C6 C B2222 20.520 -12.046 88.693 1.00 35.17 C
ATOM 22 P U B2223 16.181 -12.384 91.832 1.00 38.93 P
ATOM 23 OP1 U B2223 15.309 -12.023 92.896 1.00 39.17 O
ATOM 24 OP2 U B2223 17.425 -13.120 92.143 1.00 38.86 O
ATOM 25 O5' U B2223 15.358 -13.181 90.732 1.00 38.86 O
TER

Atoms:
OP1: (28.099,-3.637,90.369)
OP2: (27.497,-6.001,91.158)
C3': (29.221,-3.990,94.755)
C1': (27.323,-4.881,95.793)
C5': (27.716,-2.911,93.073)
O4': (26.937,-3.614,95.262)
C8: (25.783,-6.391,94.596)
O2': (29.192,-6.364,95.489)
C6: (23.486,-7.727,96.840)
C5: (24.478,-7.116,96.083)
C4: (25.358,-6.272,96.713)
P: (27.205,-4.582,91.159)
C4': (28.081,-3.042,94.514)
C2': (28.472,-5.311,94.921)
C2: (24.373,-6.597,98.634)
N1: (23.476,-7.449,98.135)
N3: (25.353,-5.968,98.016)
N6: (22.562,-8.554,96.395)
N7: (24.782,-7.183,94.755)
N9: (26.189,-5.796,95.734)
O5': (27.074,-4.087,92.635)
O3': (29.838,-3.619,95.969)
C2: (19.120,-12.609,86.823)
OP1: (21.390,-9.783,93.935)
OP2: (22.486,-11.266,92.226)
C4: (20.849,-13.967,87.401)
O5': (20.178,-10.361,91.831)
C3': (17.730,-10.974,90.279)
C1': (18.673,-10.642,88.161)
O4': (19.350,-9.831,89.128)
C5': (19.333,-9.308,91.483)
P: (21.578,-10.134,92.543)
O2: (18.158,-12.318,86.134)
C4': (18.493,-9.657,90.278)
C2': (17.368,-11.096,88.805)
O2': (16.350,-10.163,88.455)
N1: (19.495,-11.777,87.863)
N3: (19.851,-13.711,86.587)
N4: (21.556,-15.014,87.175)
C6: (20.520,-12.046,88.693)
C5: (21.219,-13.143,88.467)
O3': (16.610,-11.004,91.115)
Image (generated by PyMOL):
PyMOL image
show in jmol