Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:B9:B57
Extra
PDB:
ATOM 1 O3' A A 8 27.090 -6.888 -35.235 1.00 37.13 O
ATOM 2 P A A 9 28.290 -5.873 -35.579 1.00 39.20 P
ATOM 3 OP1 A A 9 27.670 -4.593 -35.999 1.00 40.49 O
ATOM 4 OP2 A A 9 29.196 -6.567 -36.521 1.00 41.61 O
ATOM 5 O5' A A 9 29.014 -5.684 -34.176 1.00 40.54 O
ATOM 6 C5' A A 9 29.775 -6.735 -33.603 1.00 43.93 C
ATOM 7 C4' A A 9 31.100 -6.238 -33.092 1.00 41.34 C
ATOM 8 O4' A A 9 31.941 -5.846 -34.206 1.00 45.73 O
ATOM 9 C3' A A 9 31.050 -4.998 -32.214 1.00 43.81 C
ATOM 10 O3' A A 9 30.706 -5.289 -30.869 1.00 47.27 O
ATOM 11 C2' A A 9 32.450 -4.421 -32.374 1.00 46.06 C
ATOM 12 O2' A A 9 33.374 -5.121 -31.557 1.00 48.05 O
ATOM 13 C1' A A 9 32.755 -4.755 -33.834 1.00 45.32 C
ATOM 14 N9 A A 9 32.474 -3.624 -34.736 1.00 45.55 N
ATOM 15 C8 A A 9 31.439 -3.481 -35.625 1.00 46.49 C
ATOM 16 N7 A A 9 31.472 -2.356 -36.295 1.00 44.22 N
ATOM 17 C5 A A 9 32.607 -1.717 -35.818 1.00 46.37 C
ATOM 18 C6 A A 9 33.198 -0.481 -36.128 1.00 47.24 C
ATOM 19 N6 A A 9 32.701 0.364 -37.033 1.00 49.51 N
ATOM 20 N1 A A 9 34.330 -0.142 -35.471 1.00 47.48 N
ATOM 21 C2 A A 9 34.824 -0.994 -34.565 1.00 44.97 C
ATOM 22 N3 A A 9 34.359 -2.183 -34.188 1.00 46.15 N
ATOM 23 C4 A A 9 33.236 -2.489 -34.861 1.00 46.24 C
ATOM 24 P C A 10 29.393 -4.638 -30.204 1.00 53.67 P
ATOM 25 OP1 C A 10 28.703 -3.860 -31.262 1.00 45.06 O
ATOM 26 OP2 C A 10 29.831 -3.934 -28.974 1.00 44.90 O
ATOM 27 O5' C A 10 28.523 -5.915 -29.817 1.00 50.93 O
TER
ATOM 1 O3' C B 56 26.147 3.946 -41.150 1.00 51.99 O
ATOM 2 P G B 57 27.165 2.829 -41.697 1.00 59.39 P
ATOM 3 OP1 G B 57 27.256 3.001 -43.167 1.00 58.59 O
ATOM 4 OP2 G B 57 26.712 1.523 -41.159 1.00 50.49 O
ATOM 5 O5' G B 57 28.543 3.246 -41.018 1.00 53.05 O
ATOM 6 C5' G B 57 29.097 4.537 -41.227 1.00 51.54 C
ATOM 7 C4' G B 57 30.316 4.763 -40.368 1.00 46.68 C
ATOM 8 O4' G B 57 29.935 4.815 -38.968 1.00 45.16 O
ATOM 9 C3' G B 57 31.375 3.675 -40.418 1.00 47.42 C
ATOM 10 O3' G B 57 32.209 3.767 -41.559 1.00 52.85 O
ATOM 11 C2' G B 57 32.114 3.873 -39.101 1.00 50.80 C
ATOM 12 O2' G B 57 33.011 4.970 -39.190 1.00 58.99 O
ATOM 13 C1' G B 57 30.964 4.264 -38.171 1.00 48.22 C
ATOM 14 N9 G B 57 30.425 3.101 -37.440 1.00 47.11 N
ATOM 15 C8 G B 57 29.322 2.349 -37.764 1.00 45.18 C
ATOM 16 N7 G B 57 29.098 1.382 -36.918 1.00 44.25 N
ATOM 17 C5 G B 57 30.112 1.502 -35.977 1.00 46.18 C
ATOM 18 C6 G B 57 30.393 0.733 -34.818 1.00 50.25 C
ATOM 19 O6 G B 57 29.778 -0.244 -34.376 1.00 50.51 O
ATOM 20 N1 G B 57 31.519 1.202 -34.148 1.00 49.00 N
ATOM 21 C2 G B 57 32.280 2.275 -34.544 1.00 46.68 C
ATOM 22 N2 G B 57 33.332 2.580 -33.769 1.00 47.60 N
ATOM 23 N3 G B 57 32.029 3.001 -35.622 1.00 45.51 N
ATOM 24 C4 G B 57 30.937 2.562 -36.284 1.00 44.78 C
ATOM 25 P A B 58 33.039 2.485 -42.058 1.00 56.93 P
ATOM 26 OP1 A B 58 33.260 2.647 -43.515 1.00 55.85 O
ATOM 27 OP2 A B 58 32.316 1.282 -41.576 1.00 53.11 O
ATOM 28 O5' A B 58 34.418 2.637 -41.280 1.00 48.54 O
TER
ATOM 2 P A A 9 28.290 -5.873 -35.579 1.00 39.20 P
ATOM 3 OP1 A A 9 27.670 -4.593 -35.999 1.00 40.49 O
ATOM 4 OP2 A A 9 29.196 -6.567 -36.521 1.00 41.61 O
ATOM 5 O5' A A 9 29.014 -5.684 -34.176 1.00 40.54 O
ATOM 6 C5' A A 9 29.775 -6.735 -33.603 1.00 43.93 C
ATOM 7 C4' A A 9 31.100 -6.238 -33.092 1.00 41.34 C
ATOM 8 O4' A A 9 31.941 -5.846 -34.206 1.00 45.73 O
ATOM 9 C3' A A 9 31.050 -4.998 -32.214 1.00 43.81 C
ATOM 10 O3' A A 9 30.706 -5.289 -30.869 1.00 47.27 O
ATOM 11 C2' A A 9 32.450 -4.421 -32.374 1.00 46.06 C
ATOM 12 O2' A A 9 33.374 -5.121 -31.557 1.00 48.05 O
ATOM 13 C1' A A 9 32.755 -4.755 -33.834 1.00 45.32 C
ATOM 14 N9 A A 9 32.474 -3.624 -34.736 1.00 45.55 N
ATOM 15 C8 A A 9 31.439 -3.481 -35.625 1.00 46.49 C
ATOM 16 N7 A A 9 31.472 -2.356 -36.295 1.00 44.22 N
ATOM 17 C5 A A 9 32.607 -1.717 -35.818 1.00 46.37 C
ATOM 18 C6 A A 9 33.198 -0.481 -36.128 1.00 47.24 C
ATOM 19 N6 A A 9 32.701 0.364 -37.033 1.00 49.51 N
ATOM 20 N1 A A 9 34.330 -0.142 -35.471 1.00 47.48 N
ATOM 21 C2 A A 9 34.824 -0.994 -34.565 1.00 44.97 C
ATOM 22 N3 A A 9 34.359 -2.183 -34.188 1.00 46.15 N
ATOM 23 C4 A A 9 33.236 -2.489 -34.861 1.00 46.24 C
ATOM 24 P C A 10 29.393 -4.638 -30.204 1.00 53.67 P
ATOM 25 OP1 C A 10 28.703 -3.860 -31.262 1.00 45.06 O
ATOM 26 OP2 C A 10 29.831 -3.934 -28.974 1.00 44.90 O
ATOM 27 O5' C A 10 28.523 -5.915 -29.817 1.00 50.93 O
TER
ATOM 1 O3' C B 56 26.147 3.946 -41.150 1.00 51.99 O
ATOM 2 P G B 57 27.165 2.829 -41.697 1.00 59.39 P
ATOM 3 OP1 G B 57 27.256 3.001 -43.167 1.00 58.59 O
ATOM 4 OP2 G B 57 26.712 1.523 -41.159 1.00 50.49 O
ATOM 5 O5' G B 57 28.543 3.246 -41.018 1.00 53.05 O
ATOM 6 C5' G B 57 29.097 4.537 -41.227 1.00 51.54 C
ATOM 7 C4' G B 57 30.316 4.763 -40.368 1.00 46.68 C
ATOM 8 O4' G B 57 29.935 4.815 -38.968 1.00 45.16 O
ATOM 9 C3' G B 57 31.375 3.675 -40.418 1.00 47.42 C
ATOM 10 O3' G B 57 32.209 3.767 -41.559 1.00 52.85 O
ATOM 11 C2' G B 57 32.114 3.873 -39.101 1.00 50.80 C
ATOM 12 O2' G B 57 33.011 4.970 -39.190 1.00 58.99 O
ATOM 13 C1' G B 57 30.964 4.264 -38.171 1.00 48.22 C
ATOM 14 N9 G B 57 30.425 3.101 -37.440 1.00 47.11 N
ATOM 15 C8 G B 57 29.322 2.349 -37.764 1.00 45.18 C
ATOM 16 N7 G B 57 29.098 1.382 -36.918 1.00 44.25 N
ATOM 17 C5 G B 57 30.112 1.502 -35.977 1.00 46.18 C
ATOM 18 C6 G B 57 30.393 0.733 -34.818 1.00 50.25 C
ATOM 19 O6 G B 57 29.778 -0.244 -34.376 1.00 50.51 O
ATOM 20 N1 G B 57 31.519 1.202 -34.148 1.00 49.00 N
ATOM 21 C2 G B 57 32.280 2.275 -34.544 1.00 46.68 C
ATOM 22 N2 G B 57 33.332 2.580 -33.769 1.00 47.60 N
ATOM 23 N3 G B 57 32.029 3.001 -35.622 1.00 45.51 N
ATOM 24 C4 G B 57 30.937 2.562 -36.284 1.00 44.78 C
ATOM 25 P A B 58 33.039 2.485 -42.058 1.00 56.93 P
ATOM 26 OP1 A B 58 33.260 2.647 -43.515 1.00 55.85 O
ATOM 27 OP2 A B 58 32.316 1.282 -41.576 1.00 53.11 O
ATOM 28 O5' A B 58 34.418 2.637 -41.280 1.00 48.54 O
TER
Atoms:
OP1: (27.670,-4.593,-35.999)
OP2: (29.196,-6.567,-36.521)
C3': (31.050,-4.998,-32.214)
C1': (32.755,-4.755,-33.834)
C5': (29.775,-6.735,-33.603)
O4': (31.941,-5.846,-34.206)
C8: (31.439,-3.481,-35.625)
O2': (33.374,-5.121,-31.557)
C6: (33.198,-0.481,-36.128)
C5: (32.607,-1.717,-35.818)
C4: (33.236,-2.489,-34.861)
P: (28.290,-5.873,-35.579)
C4': (31.100,-6.238,-33.092)
C2': (32.450,-4.421,-32.374)
C2: (34.824,-0.994,-34.565)
N1: (34.330,-0.142,-35.471)
N3: (34.359,-2.183,-34.188)
N6: (32.701,0.364,-37.033)
N7: (31.472,-2.356,-36.295)
N9: (32.474,-3.624,-34.736)
O5': (29.014,-5.684,-34.176)
O3': (30.706,-5.289,-30.869)
OP2: (29.196,-6.567,-36.521)
C3': (31.050,-4.998,-32.214)
C1': (32.755,-4.755,-33.834)
C5': (29.775,-6.735,-33.603)
O4': (31.941,-5.846,-34.206)
C8: (31.439,-3.481,-35.625)
O2': (33.374,-5.121,-31.557)
C6: (33.198,-0.481,-36.128)
C5: (32.607,-1.717,-35.818)
C4: (33.236,-2.489,-34.861)
P: (28.290,-5.873,-35.579)
C4': (31.100,-6.238,-33.092)
C2': (32.450,-4.421,-32.374)
C2: (34.824,-0.994,-34.565)
N1: (34.330,-0.142,-35.471)
N3: (34.359,-2.183,-34.188)
N6: (32.701,0.364,-37.033)
N7: (31.472,-2.356,-36.295)
N9: (32.474,-3.624,-34.736)
O5': (29.014,-5.684,-34.176)
O3': (30.706,-5.289,-30.869)
OP1: (27.256,3.001,-43.167)
OP2: (26.712,1.523,-41.159)
C3': (31.375,3.675,-40.418)
C1': (30.964,4.264,-38.171)
C5': (29.097,4.537,-41.227)
O6: (29.778,-0.244,-34.376)
O4': (29.935,4.815,-38.968)
C8: (29.322,2.349,-37.764)
C2: (32.280,2.275,-34.544)
C6: (30.393,0.733,-34.818)
C5: (30.112,1.502,-35.977)
C4: (30.937,2.562,-36.284)
P: (27.165,2.829,-41.697)
C4': (30.316,4.763,-40.368)
C2': (32.114,3.873,-39.101)
O2': (33.011,4.970,-39.190)
N1: (31.519,1.202,-34.148)
N2: (33.332,2.580,-33.769)
N3: (32.029,3.001,-35.622)
N7: (29.098,1.382,-36.918)
N9: (30.425,3.101,-37.440)
O5': (28.543,3.246,-41.018)
O3': (32.209,3.767,-41.559)
OP2: (26.712,1.523,-41.159)
C3': (31.375,3.675,-40.418)
C1': (30.964,4.264,-38.171)
C5': (29.097,4.537,-41.227)
O6: (29.778,-0.244,-34.376)
O4': (29.935,4.815,-38.968)
C8: (29.322,2.349,-37.764)
C2: (32.280,2.275,-34.544)
C6: (30.393,0.733,-34.818)
C5: (30.112,1.502,-35.977)
C4: (30.937,2.562,-36.284)
P: (27.165,2.829,-41.697)
C4': (30.316,4.763,-40.368)
C2': (32.114,3.873,-39.101)
O2': (33.011,4.970,-39.190)
N1: (31.519,1.202,-34.148)
N2: (33.332,2.580,-33.769)
N3: (32.029,3.001,-35.622)
N7: (29.098,1.382,-36.918)
N9: (30.425,3.101,-37.440)
O5': (28.543,3.246,-41.018)
O3': (32.209,3.767,-41.559)
Image (generated by PyMOL):