Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:Y51:Y50
Extra
PDB:
ATOM 1 O3' G A 50 1.244 8.113 67.774 1.00 39.32 O
ATOM 2 P A A 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 3 OP1 A A 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 4 OP2 A A 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 5 O5' A A 51 0.884 7.782 65.278 1.00 40.81 O
ATOM 6 C5' A A 51 0.155 7.406 64.107 1.00 41.41 C
ATOM 7 C4' A A 51 0.852 7.851 62.830 1.00 41.87 C
ATOM 8 O4' A A 51 1.234 9.248 62.935 1.00 42.16 O
ATOM 9 C3' A A 51 2.136 7.104 62.491 1.00 42.39 C
ATOM 10 O3' A A 51 2.339 7.074 61.079 1.00 43.35 O
ATOM 11 C2' A A 51 3.191 7.966 63.176 1.00 41.71 C
ATOM 12 O2' A A 51 4.475 7.810 62.604 1.00 40.55 O
ATOM 13 C1' A A 51 2.645 9.361 62.893 1.00 41.14 C
ATOM 14 N9 A A 51 3.060 10.359 63.875 1.00 41.03 N
ATOM 15 C8 A A 51 2.413 10.699 65.031 1.00 40.84 C
ATOM 16 N7 A A 51 3.020 11.634 65.722 1.00 40.72 N
ATOM 17 C5 A A 51 4.143 11.929 64.966 1.00 40.89 C
ATOM 18 C6 A A 51 5.201 12.841 65.152 1.00 40.65 C
ATOM 19 N6 A A 51 5.294 13.656 66.208 1.00 40.26 N
ATOM 20 N1 A A 51 6.163 12.884 64.206 1.00 40.58 N
ATOM 21 C2 A A 51 6.071 12.065 63.151 1.00 40.56 C
ATOM 22 N3 A A 51 5.127 11.170 62.868 1.00 40.78 N
ATOM 23 C4 A A 51 4.184 11.150 63.825 1.00 41.00 C
ATOM 24 P U A 52 1.524 6.048 60.159 1.00 43.91 P
ATOM 25 OP1 U A 52 0.942 5.008 61.037 1.00 43.70 O
ATOM 26 OP2 U A 52 2.392 5.653 59.024 1.00 43.95 O
ATOM 27 O5' U A 52 0.349 6.964 59.582 1.00 43.85 O
TER
ATOM 1 O3' U B 49 5.551 4.207 65.680 1.00 36.38 O
ATOM 2 P G B 50 4.267 4.742 64.892 1.00 36.51 P
ATOM 3 OP1 G B 50 3.249 3.668 64.901 1.00 36.86 O
ATOM 4 OP2 G B 50 4.731 5.316 63.610 1.00 35.75 O
ATOM 5 O5' G B 50 3.748 5.939 65.819 1.00 36.63 O
ATOM 6 C5' G B 50 3.217 5.645 67.103 1.00 36.90 C
ATOM 7 C4' G B 50 3.283 6.861 68.008 1.00 37.29 C
ATOM 8 O4' G B 50 4.666 7.227 68.232 1.00 36.66 O
ATOM 9 C3' G B 50 2.629 8.116 67.450 1.00 37.54 C
ATOM 10 O3' G B 50 1.244 8.113 67.774 1.00 39.32 O
ATOM 11 C2' G B 50 3.374 9.213 68.207 1.00 36.79 C
ATOM 12 O2' G B 50 2.838 9.446 69.496 1.00 35.65 O
ATOM 13 C1' G B 50 4.781 8.632 68.331 1.00 35.73 C
ATOM 14 N9 G B 50 5.697 9.101 67.294 1.00 35.51 N
ATOM 15 C8 G B 50 5.851 8.581 66.032 1.00 35.06 C
ATOM 16 N7 G B 50 6.746 9.207 65.319 1.00 34.75 N
ATOM 17 C5 G B 50 7.213 10.207 66.162 1.00 34.58 C
ATOM 18 C6 G B 50 8.195 11.200 65.938 1.00 34.26 C
ATOM 19 O6 G B 50 8.860 11.394 64.913 1.00 33.65 O
ATOM 20 N1 G B 50 8.375 12.017 67.052 1.00 34.27 N
ATOM 21 C2 G B 50 7.690 11.885 68.235 1.00 34.50 C
ATOM 22 N2 G B 50 7.997 12.765 69.198 1.00 34.74 N
ATOM 23 N3 G B 50 6.767 10.956 68.459 1.00 34.62 N
ATOM 24 C4 G B 50 6.580 10.155 67.382 1.00 34.84 C
ATOM 25 P A B 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 26 OP1 A B 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 27 OP2 A B 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 28 O5' A B 51 0.884 7.782 65.278 1.00 40.81 O
TER
ATOM 2 P A A 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 3 OP1 A A 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 4 OP2 A A 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 5 O5' A A 51 0.884 7.782 65.278 1.00 40.81 O
ATOM 6 C5' A A 51 0.155 7.406 64.107 1.00 41.41 C
ATOM 7 C4' A A 51 0.852 7.851 62.830 1.00 41.87 C
ATOM 8 O4' A A 51 1.234 9.248 62.935 1.00 42.16 O
ATOM 9 C3' A A 51 2.136 7.104 62.491 1.00 42.39 C
ATOM 10 O3' A A 51 2.339 7.074 61.079 1.00 43.35 O
ATOM 11 C2' A A 51 3.191 7.966 63.176 1.00 41.71 C
ATOM 12 O2' A A 51 4.475 7.810 62.604 1.00 40.55 O
ATOM 13 C1' A A 51 2.645 9.361 62.893 1.00 41.14 C
ATOM 14 N9 A A 51 3.060 10.359 63.875 1.00 41.03 N
ATOM 15 C8 A A 51 2.413 10.699 65.031 1.00 40.84 C
ATOM 16 N7 A A 51 3.020 11.634 65.722 1.00 40.72 N
ATOM 17 C5 A A 51 4.143 11.929 64.966 1.00 40.89 C
ATOM 18 C6 A A 51 5.201 12.841 65.152 1.00 40.65 C
ATOM 19 N6 A A 51 5.294 13.656 66.208 1.00 40.26 N
ATOM 20 N1 A A 51 6.163 12.884 64.206 1.00 40.58 N
ATOM 21 C2 A A 51 6.071 12.065 63.151 1.00 40.56 C
ATOM 22 N3 A A 51 5.127 11.170 62.868 1.00 40.78 N
ATOM 23 C4 A A 51 4.184 11.150 63.825 1.00 41.00 C
ATOM 24 P U A 52 1.524 6.048 60.159 1.00 43.91 P
ATOM 25 OP1 U A 52 0.942 5.008 61.037 1.00 43.70 O
ATOM 26 OP2 U A 52 2.392 5.653 59.024 1.00 43.95 O
ATOM 27 O5' U A 52 0.349 6.964 59.582 1.00 43.85 O
TER
ATOM 1 O3' U B 49 5.551 4.207 65.680 1.00 36.38 O
ATOM 2 P G B 50 4.267 4.742 64.892 1.00 36.51 P
ATOM 3 OP1 G B 50 3.249 3.668 64.901 1.00 36.86 O
ATOM 4 OP2 G B 50 4.731 5.316 63.610 1.00 35.75 O
ATOM 5 O5' G B 50 3.748 5.939 65.819 1.00 36.63 O
ATOM 6 C5' G B 50 3.217 5.645 67.103 1.00 36.90 C
ATOM 7 C4' G B 50 3.283 6.861 68.008 1.00 37.29 C
ATOM 8 O4' G B 50 4.666 7.227 68.232 1.00 36.66 O
ATOM 9 C3' G B 50 2.629 8.116 67.450 1.00 37.54 C
ATOM 10 O3' G B 50 1.244 8.113 67.774 1.00 39.32 O
ATOM 11 C2' G B 50 3.374 9.213 68.207 1.00 36.79 C
ATOM 12 O2' G B 50 2.838 9.446 69.496 1.00 35.65 O
ATOM 13 C1' G B 50 4.781 8.632 68.331 1.00 35.73 C
ATOM 14 N9 G B 50 5.697 9.101 67.294 1.00 35.51 N
ATOM 15 C8 G B 50 5.851 8.581 66.032 1.00 35.06 C
ATOM 16 N7 G B 50 6.746 9.207 65.319 1.00 34.75 N
ATOM 17 C5 G B 50 7.213 10.207 66.162 1.00 34.58 C
ATOM 18 C6 G B 50 8.195 11.200 65.938 1.00 34.26 C
ATOM 19 O6 G B 50 8.860 11.394 64.913 1.00 33.65 O
ATOM 20 N1 G B 50 8.375 12.017 67.052 1.00 34.27 N
ATOM 21 C2 G B 50 7.690 11.885 68.235 1.00 34.50 C
ATOM 22 N2 G B 50 7.997 12.765 69.198 1.00 34.74 N
ATOM 23 N3 G B 50 6.767 10.956 68.459 1.00 34.62 N
ATOM 24 C4 G B 50 6.580 10.155 67.382 1.00 34.84 C
ATOM 25 P A B 51 0.103 8.025 66.652 1.00 40.31 P
ATOM 26 OP1 A B 51 -0.565 9.346 66.589 1.00 40.43 O
ATOM 27 OP2 A B 51 -0.689 6.808 66.941 1.00 40.76 O
ATOM 28 O5' A B 51 0.884 7.782 65.278 1.00 40.81 O
TER
Atoms:
OP1: (-0.565,9.346,66.589)
OP2: (-0.689,6.808,66.941)
C3': (2.136,7.104,62.491)
C1': (2.645,9.361,62.893)
C5': (0.155,7.406,64.107)
O4': (1.234,9.248,62.935)
C8: (2.413,10.699,65.031)
O2': (4.475,7.810,62.604)
C6: (5.201,12.841,65.152)
C5: (4.143,11.929,64.966)
C4: (4.184,11.150,63.825)
P: (0.103,8.025,66.652)
C4': (0.852,7.851,62.830)
C2': (3.191,7.966,63.176)
C2: (6.071,12.065,63.151)
N1: (6.163,12.884,64.206)
N3: (5.127,11.170,62.868)
N6: (5.294,13.656,66.208)
N7: (3.020,11.634,65.722)
N9: (3.060,10.359,63.875)
O5': (0.884,7.782,65.278)
O3': (2.339,7.074,61.079)
OP2: (-0.689,6.808,66.941)
C3': (2.136,7.104,62.491)
C1': (2.645,9.361,62.893)
C5': (0.155,7.406,64.107)
O4': (1.234,9.248,62.935)
C8: (2.413,10.699,65.031)
O2': (4.475,7.810,62.604)
C6: (5.201,12.841,65.152)
C5: (4.143,11.929,64.966)
C4: (4.184,11.150,63.825)
P: (0.103,8.025,66.652)
C4': (0.852,7.851,62.830)
C2': (3.191,7.966,63.176)
C2: (6.071,12.065,63.151)
N1: (6.163,12.884,64.206)
N3: (5.127,11.170,62.868)
N6: (5.294,13.656,66.208)
N7: (3.020,11.634,65.722)
N9: (3.060,10.359,63.875)
O5': (0.884,7.782,65.278)
O3': (2.339,7.074,61.079)
OP1: (3.249,3.668,64.901)
OP2: (4.731,5.316,63.610)
C3': (2.629,8.116,67.450)
C1': (4.781,8.632,68.331)
C5': (3.217,5.645,67.103)
O6: (8.860,11.394,64.913)
O4': (4.666,7.227,68.232)
C8: (5.851,8.581,66.032)
C2: (7.690,11.885,68.235)
C6: (8.195,11.200,65.938)
C5: (7.213,10.207,66.162)
C4: (6.580,10.155,67.382)
P: (4.267,4.742,64.892)
C4': (3.283,6.861,68.008)
C2': (3.374,9.213,68.207)
O2': (2.838,9.446,69.496)
N1: (8.375,12.017,67.052)
N2: (7.997,12.765,69.198)
N3: (6.767,10.956,68.459)
N7: (6.746,9.207,65.319)
N9: (5.697,9.101,67.294)
O5': (3.748,5.939,65.819)
O3': (1.244,8.113,67.774)
OP2: (4.731,5.316,63.610)
C3': (2.629,8.116,67.450)
C1': (4.781,8.632,68.331)
C5': (3.217,5.645,67.103)
O6: (8.860,11.394,64.913)
O4': (4.666,7.227,68.232)
C8: (5.851,8.581,66.032)
C2: (7.690,11.885,68.235)
C6: (8.195,11.200,65.938)
C5: (7.213,10.207,66.162)
C4: (6.580,10.155,67.382)
P: (4.267,4.742,64.892)
C4': (3.283,6.861,68.008)
C2': (3.374,9.213,68.207)
O2': (2.838,9.446,69.496)
N1: (8.375,12.017,67.052)
N2: (7.997,12.765,69.198)
N3: (6.767,10.956,68.459)
N7: (6.746,9.207,65.319)
N9: (5.697,9.101,67.294)
O5': (3.748,5.939,65.819)
O3': (1.244,8.113,67.774)
Image (generated by PyMOL):