Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3GOT:A9:A57
Extra
PDB:
ATOM 1 O3' A A 8 -19.930 -5.387 4.680 1.00 33.33 O
ATOM 2 P A A 9 -19.780 -5.610 6.281 1.00 32.84 P
ATOM 3 OP1 A A 9 -20.654 -4.575 6.915 1.00 32.37 O
ATOM 4 OP2 A A 9 -18.348 -5.637 6.614 1.00 32.38 O
ATOM 5 O5' A A 9 -20.396 -7.081 6.447 1.00 31.83 O
ATOM 6 C5' A A 9 -19.634 -8.235 6.085 1.00 31.83 C
ATOM 7 C4' A A 9 -19.445 -9.124 7.293 1.00 29.97 C
ATOM 8 O4' A A 9 -18.597 -8.399 8.200 1.00 31.02 O
ATOM 9 C3' A A 9 -20.702 -9.340 8.123 1.00 30.92 C
ATOM 10 O3' A A 9 -21.524 -10.392 7.601 1.00 32.10 O
ATOM 11 C2' A A 9 -20.103 -9.712 9.487 1.00 30.29 C
ATOM 12 O2' A A 9 -19.659 -11.054 9.508 1.00 32.27 O
ATOM 13 C1' A A 9 -18.858 -8.827 9.527 1.00 30.13 C
ATOM 14 N9 A A 9 -18.945 -7.654 10.383 1.00 29.35 N
ATOM 15 C8 A A 9 -18.946 -6.310 10.032 1.00 30.63 C
ATOM 16 N7 A A 9 -18.964 -5.490 11.068 1.00 28.62 N
ATOM 17 C5 A A 9 -18.994 -6.343 12.159 1.00 28.80 C
ATOM 18 C6 A A 9 -19.033 -6.087 13.534 1.00 28.66 C
ATOM 19 N6 A A 9 -18.998 -4.839 14.046 1.00 27.66 N
ATOM 20 N1 A A 9 -19.092 -7.153 14.371 1.00 29.24 N
ATOM 21 C2 A A 9 -19.088 -8.401 13.839 1.00 30.59 C
ATOM 22 N3 A A 9 -19.041 -8.771 12.537 1.00 29.15 N
ATOM 23 C4 A A 9 -19.000 -7.679 11.752 1.00 29.43 C
ATOM 24 P U A 10 -23.089 -10.110 7.200 1.00 33.18 P
ATOM 25 OP1 U A 10 -23.428 -8.766 7.772 1.00 32.96 O
ATOM 26 OP2 U A 10 -23.956 -11.272 7.531 1.00 33.30 O
ATOM 27 O5' U A 10 -23.069 -10.215 5.606 1.00 34.63 O
TER
ATOM 1 O3' C B 56 -22.348 3.019 12.919 1.00 23.36 O
ATOM 2 P G B 57 -20.881 2.444 12.783 1.00 26.92 P
ATOM 3 OP1 G B 57 -19.852 3.408 13.173 1.00 20.96 O
ATOM 4 OP2 G B 57 -20.749 1.711 11.490 1.00 24.18 O
ATOM 5 O5' G B 57 -20.789 1.229 13.845 1.00 26.78 O
ATOM 6 C5' G B 57 -20.742 1.509 15.235 1.00 26.13 C
ATOM 7 C4' G B 57 -20.797 0.223 16.033 1.00 27.19 C
ATOM 8 O4' G B 57 -21.998 -0.523 15.715 1.00 25.57 O
ATOM 9 C3' G B 57 -19.677 -0.747 15.757 1.00 27.68 C
ATOM 10 O3' G B 57 -18.559 -0.307 16.512 1.00 31.48 O
ATOM 11 C2' G B 57 -20.272 -2.040 16.294 1.00 28.63 C
ATOM 12 O2' G B 57 -20.236 -2.030 17.704 1.00 30.08 O
ATOM 13 C1' G B 57 -21.731 -1.902 15.839 1.00 28.24 C
ATOM 14 N9 G B 57 -21.983 -2.560 14.558 1.00 27.14 N
ATOM 15 C8 G B 57 -22.050 -2.011 13.290 1.00 27.67 C
ATOM 16 N7 G B 57 -22.207 -2.921 12.351 1.00 27.80 N
ATOM 17 C5 G B 57 -22.258 -4.124 13.053 1.00 25.49 C
ATOM 18 C6 G B 57 -22.358 -5.445 12.578 1.00 25.30 C
ATOM 19 O6 G B 57 -22.470 -5.836 11.382 1.00 23.33 O
ATOM 20 N1 G B 57 -22.326 -6.371 13.628 1.00 25.35 N
ATOM 21 C2 G B 57 -22.229 -6.053 14.975 1.00 27.06 C
ATOM 22 N2 G B 57 -22.203 -7.093 15.858 1.00 26.97 N
ATOM 23 N3 G B 57 -22.156 -4.808 15.426 1.00 26.53 N
ATOM 24 C4 G B 57 -22.155 -3.906 14.412 1.00 25.62 C
ATOM 25 P A B 58 -17.063 -0.635 16.002 1.00 35.73 P
ATOM 26 OP1 A B 58 -16.090 0.253 16.681 1.00 35.77 O
ATOM 27 OP2 A B 58 -17.034 -0.713 14.524 1.00 35.67 O
ATOM 28 O5' A B 58 -16.842 -2.121 16.544 1.00 36.67 O
TER
ATOM 2 P A A 9 -19.780 -5.610 6.281 1.00 32.84 P
ATOM 3 OP1 A A 9 -20.654 -4.575 6.915 1.00 32.37 O
ATOM 4 OP2 A A 9 -18.348 -5.637 6.614 1.00 32.38 O
ATOM 5 O5' A A 9 -20.396 -7.081 6.447 1.00 31.83 O
ATOM 6 C5' A A 9 -19.634 -8.235 6.085 1.00 31.83 C
ATOM 7 C4' A A 9 -19.445 -9.124 7.293 1.00 29.97 C
ATOM 8 O4' A A 9 -18.597 -8.399 8.200 1.00 31.02 O
ATOM 9 C3' A A 9 -20.702 -9.340 8.123 1.00 30.92 C
ATOM 10 O3' A A 9 -21.524 -10.392 7.601 1.00 32.10 O
ATOM 11 C2' A A 9 -20.103 -9.712 9.487 1.00 30.29 C
ATOM 12 O2' A A 9 -19.659 -11.054 9.508 1.00 32.27 O
ATOM 13 C1' A A 9 -18.858 -8.827 9.527 1.00 30.13 C
ATOM 14 N9 A A 9 -18.945 -7.654 10.383 1.00 29.35 N
ATOM 15 C8 A A 9 -18.946 -6.310 10.032 1.00 30.63 C
ATOM 16 N7 A A 9 -18.964 -5.490 11.068 1.00 28.62 N
ATOM 17 C5 A A 9 -18.994 -6.343 12.159 1.00 28.80 C
ATOM 18 C6 A A 9 -19.033 -6.087 13.534 1.00 28.66 C
ATOM 19 N6 A A 9 -18.998 -4.839 14.046 1.00 27.66 N
ATOM 20 N1 A A 9 -19.092 -7.153 14.371 1.00 29.24 N
ATOM 21 C2 A A 9 -19.088 -8.401 13.839 1.00 30.59 C
ATOM 22 N3 A A 9 -19.041 -8.771 12.537 1.00 29.15 N
ATOM 23 C4 A A 9 -19.000 -7.679 11.752 1.00 29.43 C
ATOM 24 P U A 10 -23.089 -10.110 7.200 1.00 33.18 P
ATOM 25 OP1 U A 10 -23.428 -8.766 7.772 1.00 32.96 O
ATOM 26 OP2 U A 10 -23.956 -11.272 7.531 1.00 33.30 O
ATOM 27 O5' U A 10 -23.069 -10.215 5.606 1.00 34.63 O
TER
ATOM 1 O3' C B 56 -22.348 3.019 12.919 1.00 23.36 O
ATOM 2 P G B 57 -20.881 2.444 12.783 1.00 26.92 P
ATOM 3 OP1 G B 57 -19.852 3.408 13.173 1.00 20.96 O
ATOM 4 OP2 G B 57 -20.749 1.711 11.490 1.00 24.18 O
ATOM 5 O5' G B 57 -20.789 1.229 13.845 1.00 26.78 O
ATOM 6 C5' G B 57 -20.742 1.509 15.235 1.00 26.13 C
ATOM 7 C4' G B 57 -20.797 0.223 16.033 1.00 27.19 C
ATOM 8 O4' G B 57 -21.998 -0.523 15.715 1.00 25.57 O
ATOM 9 C3' G B 57 -19.677 -0.747 15.757 1.00 27.68 C
ATOM 10 O3' G B 57 -18.559 -0.307 16.512 1.00 31.48 O
ATOM 11 C2' G B 57 -20.272 -2.040 16.294 1.00 28.63 C
ATOM 12 O2' G B 57 -20.236 -2.030 17.704 1.00 30.08 O
ATOM 13 C1' G B 57 -21.731 -1.902 15.839 1.00 28.24 C
ATOM 14 N9 G B 57 -21.983 -2.560 14.558 1.00 27.14 N
ATOM 15 C8 G B 57 -22.050 -2.011 13.290 1.00 27.67 C
ATOM 16 N7 G B 57 -22.207 -2.921 12.351 1.00 27.80 N
ATOM 17 C5 G B 57 -22.258 -4.124 13.053 1.00 25.49 C
ATOM 18 C6 G B 57 -22.358 -5.445 12.578 1.00 25.30 C
ATOM 19 O6 G B 57 -22.470 -5.836 11.382 1.00 23.33 O
ATOM 20 N1 G B 57 -22.326 -6.371 13.628 1.00 25.35 N
ATOM 21 C2 G B 57 -22.229 -6.053 14.975 1.00 27.06 C
ATOM 22 N2 G B 57 -22.203 -7.093 15.858 1.00 26.97 N
ATOM 23 N3 G B 57 -22.156 -4.808 15.426 1.00 26.53 N
ATOM 24 C4 G B 57 -22.155 -3.906 14.412 1.00 25.62 C
ATOM 25 P A B 58 -17.063 -0.635 16.002 1.00 35.73 P
ATOM 26 OP1 A B 58 -16.090 0.253 16.681 1.00 35.77 O
ATOM 27 OP2 A B 58 -17.034 -0.713 14.524 1.00 35.67 O
ATOM 28 O5' A B 58 -16.842 -2.121 16.544 1.00 36.67 O
TER
Atoms:
OP1: (-20.654,-4.575,6.915)
OP2: (-18.348,-5.637,6.614)
C3': (-20.702,-9.340,8.123)
C1': (-18.858,-8.827,9.527)
C5': (-19.634,-8.235,6.085)
O4': (-18.597,-8.399,8.200)
C8: (-18.946,-6.310,10.032)
O2': (-19.659,-11.054,9.508)
C6: (-19.033,-6.087,13.534)
C5: (-18.994,-6.343,12.159)
C4: (-19.000,-7.679,11.752)
P: (-19.780,-5.610,6.281)
C4': (-19.445,-9.124,7.293)
C2': (-20.103,-9.712,9.487)
C2: (-19.088,-8.401,13.839)
N1: (-19.092,-7.153,14.371)
N3: (-19.041,-8.771,12.537)
N6: (-18.998,-4.839,14.046)
N7: (-18.964,-5.490,11.068)
N9: (-18.945,-7.654,10.383)
O5': (-20.396,-7.081,6.447)
O3': (-21.524,-10.392,7.601)
OP2: (-18.348,-5.637,6.614)
C3': (-20.702,-9.340,8.123)
C1': (-18.858,-8.827,9.527)
C5': (-19.634,-8.235,6.085)
O4': (-18.597,-8.399,8.200)
C8: (-18.946,-6.310,10.032)
O2': (-19.659,-11.054,9.508)
C6: (-19.033,-6.087,13.534)
C5: (-18.994,-6.343,12.159)
C4: (-19.000,-7.679,11.752)
P: (-19.780,-5.610,6.281)
C4': (-19.445,-9.124,7.293)
C2': (-20.103,-9.712,9.487)
C2: (-19.088,-8.401,13.839)
N1: (-19.092,-7.153,14.371)
N3: (-19.041,-8.771,12.537)
N6: (-18.998,-4.839,14.046)
N7: (-18.964,-5.490,11.068)
N9: (-18.945,-7.654,10.383)
O5': (-20.396,-7.081,6.447)
O3': (-21.524,-10.392,7.601)
OP1: (-19.852,3.408,13.173)
OP2: (-20.749,1.711,11.490)
C3': (-19.677,-0.747,15.757)
C1': (-21.731,-1.902,15.839)
C5': (-20.742,1.509,15.235)
O6: (-22.470,-5.836,11.382)
O4': (-21.998,-0.523,15.715)
C8: (-22.050,-2.011,13.290)
C2: (-22.229,-6.053,14.975)
C6: (-22.358,-5.445,12.578)
C5: (-22.258,-4.124,13.053)
C4: (-22.155,-3.906,14.412)
P: (-20.881,2.444,12.783)
C4': (-20.797,0.223,16.033)
C2': (-20.272,-2.040,16.294)
O2': (-20.236,-2.030,17.704)
N1: (-22.326,-6.371,13.628)
N2: (-22.203,-7.093,15.858)
N3: (-22.156,-4.808,15.426)
N7: (-22.207,-2.921,12.351)
N9: (-21.983,-2.560,14.558)
O5': (-20.789,1.229,13.845)
O3': (-18.559,-0.307,16.512)
OP2: (-20.749,1.711,11.490)
C3': (-19.677,-0.747,15.757)
C1': (-21.731,-1.902,15.839)
C5': (-20.742,1.509,15.235)
O6: (-22.470,-5.836,11.382)
O4': (-21.998,-0.523,15.715)
C8: (-22.050,-2.011,13.290)
C2: (-22.229,-6.053,14.975)
C6: (-22.358,-5.445,12.578)
C5: (-22.258,-4.124,13.053)
C4: (-22.155,-3.906,14.412)
P: (-20.881,2.444,12.783)
C4': (-20.797,0.223,16.033)
C2': (-20.272,-2.040,16.294)
O2': (-20.236,-2.030,17.704)
N1: (-22.326,-6.371,13.628)
N2: (-22.203,-7.093,15.858)
N3: (-22.156,-4.808,15.426)
N7: (-22.207,-2.921,12.351)
N9: (-21.983,-2.560,14.558)
O5': (-20.789,1.229,13.845)
O3': (-18.559,-0.307,16.512)
Image (generated by PyMOL):