Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD3:B2:A7
Extra
PDB:
ATOM 1 O3' G A 1 27.886 -8.126 83.616 1.00 24.33 O
ATOM 2 P U A 2 26.849 -7.297 82.716 1.00 25.48 P
ATOM 3 OP1 U A 2 27.632 -6.281 81.967 1.00 26.96 O
ATOM 4 OP2 U A 2 25.724 -6.872 83.573 1.00 21.34 O
ATOM 5 O5' U A 2 26.316 -8.373 81.672 1.00 22.17 O
ATOM 6 C5' U A 2 27.206 -8.991 80.752 1.00 23.83 C
ATOM 7 C4' U A 2 26.483 -10.060 79.974 1.00 24.31 C
ATOM 8 O4' U A 2 26.023 -11.079 80.898 1.00 23.56 O
ATOM 9 C3' U A 2 25.211 -9.603 79.281 1.00 24.46 C
ATOM 10 O3' U A 2 25.488 -9.005 78.020 1.00 25.28 O
ATOM 11 C2' U A 2 24.450 -10.914 79.128 1.00 24.18 C
ATOM 12 O2' U A 2 24.926 -11.697 78.057 1.00 23.00 O
ATOM 13 C1' U A 2 24.786 -11.605 80.449 1.00 24.52 C
ATOM 14 N1 U A 2 23.762 -11.364 81.475 1.00 23.03 N
ATOM 15 C2 U A 2 22.607 -12.108 81.377 1.00 22.17 C
ATOM 16 O2 U A 2 22.435 -12.920 80.489 1.00 20.59 O
ATOM 17 N3 U A 2 21.665 -11.861 82.348 1.00 20.24 N
ATOM 18 C4 U A 2 21.759 -10.955 83.382 1.00 21.63 C
ATOM 19 O4 U A 2 20.825 -10.851 84.179 1.00 20.52 O
ATOM 20 C5 U A 2 22.987 -10.210 83.416 1.00 22.27 C
ATOM 21 C6 U A 2 23.927 -10.438 82.484 1.00 23.86 C
ATOM 22 P C A 3 24.601 -7.760 77.525 1.00 25.41 P
ATOM 23 OP1 C A 3 25.083 -7.378 76.175 1.00 25.17 O
ATOM 24 OP2 C A 3 24.578 -6.754 78.610 1.00 23.96 O
ATOM 25 O5' C A 3 23.133 -8.359 77.384 1.00 25.24 O
TER
ATOM 1 O3' A B 6 13.355 -18.293 83.956 1.00 23.14 O
ATOM 2 P G B 7 14.644 -19.173 84.306 1.00 22.88 P
ATOM 3 OP1 G B 7 14.146 -20.502 84.750 1.00 22.93 O
ATOM 4 OP2 G B 7 15.537 -18.385 85.195 1.00 20.10 O
ATOM 5 O5' G B 7 15.367 -19.332 82.899 1.00 22.92 O
ATOM 6 C5' G B 7 14.741 -20.055 81.844 1.00 22.27 C
ATOM 7 C4' G B 7 15.549 -19.922 80.585 1.00 20.41 C
ATOM 8 O4' G B 7 15.478 -18.560 80.095 1.00 20.11 O
ATOM 9 C3' G B 7 17.032 -20.178 80.768 1.00 20.88 C
ATOM 10 O3' G B 7 17.292 -21.565 80.703 1.00 22.52 O
ATOM 11 C2' G B 7 17.620 -19.427 79.585 1.00 20.37 C
ATOM 12 O2' G B 7 17.422 -20.148 78.385 1.00 21.15 O
ATOM 13 C1' G B 7 16.739 -18.174 79.574 1.00 18.46 C
ATOM 14 N9 G B 7 17.243 -17.090 80.411 1.00 18.08 N
ATOM 15 C8 G B 7 16.693 -16.657 81.594 1.00 17.79 C
ATOM 16 N7 G B 7 17.331 -15.647 82.117 1.00 19.27 N
ATOM 17 C5 G B 7 18.375 -15.400 81.234 1.00 19.63 C
ATOM 18 C6 G B 7 19.406 -14.420 81.281 1.00 20.16 C
ATOM 19 O6 G B 7 19.595 -13.546 82.133 1.00 21.36 O
ATOM 20 N1 G B 7 20.270 -14.531 80.193 1.00 18.55 N
ATOM 21 C2 G B 7 20.155 -15.468 79.189 1.00 19.52 C
ATOM 22 N2 G B 7 21.096 -15.427 78.230 1.00 20.12 N
ATOM 23 N3 G B 7 19.194 -16.381 79.131 1.00 19.07 N
ATOM 24 C4 G B 7 18.343 -16.289 80.178 1.00 17.68 C
ATOM 25 P C B 8 18.451 -22.196 81.614 1.00 24.32 P
ATOM 26 OP1 C B 8 18.454 -23.657 81.338 1.00 25.96 O
ATOM 27 OP2 C B 8 18.300 -21.713 83.008 1.00 24.19 O
ATOM 28 O5' C B 8 19.780 -21.568 81.017 1.00 24.50 O
TER
ATOM 2 P U A 2 26.849 -7.297 82.716 1.00 25.48 P
ATOM 3 OP1 U A 2 27.632 -6.281 81.967 1.00 26.96 O
ATOM 4 OP2 U A 2 25.724 -6.872 83.573 1.00 21.34 O
ATOM 5 O5' U A 2 26.316 -8.373 81.672 1.00 22.17 O
ATOM 6 C5' U A 2 27.206 -8.991 80.752 1.00 23.83 C
ATOM 7 C4' U A 2 26.483 -10.060 79.974 1.00 24.31 C
ATOM 8 O4' U A 2 26.023 -11.079 80.898 1.00 23.56 O
ATOM 9 C3' U A 2 25.211 -9.603 79.281 1.00 24.46 C
ATOM 10 O3' U A 2 25.488 -9.005 78.020 1.00 25.28 O
ATOM 11 C2' U A 2 24.450 -10.914 79.128 1.00 24.18 C
ATOM 12 O2' U A 2 24.926 -11.697 78.057 1.00 23.00 O
ATOM 13 C1' U A 2 24.786 -11.605 80.449 1.00 24.52 C
ATOM 14 N1 U A 2 23.762 -11.364 81.475 1.00 23.03 N
ATOM 15 C2 U A 2 22.607 -12.108 81.377 1.00 22.17 C
ATOM 16 O2 U A 2 22.435 -12.920 80.489 1.00 20.59 O
ATOM 17 N3 U A 2 21.665 -11.861 82.348 1.00 20.24 N
ATOM 18 C4 U A 2 21.759 -10.955 83.382 1.00 21.63 C
ATOM 19 O4 U A 2 20.825 -10.851 84.179 1.00 20.52 O
ATOM 20 C5 U A 2 22.987 -10.210 83.416 1.00 22.27 C
ATOM 21 C6 U A 2 23.927 -10.438 82.484 1.00 23.86 C
ATOM 22 P C A 3 24.601 -7.760 77.525 1.00 25.41 P
ATOM 23 OP1 C A 3 25.083 -7.378 76.175 1.00 25.17 O
ATOM 24 OP2 C A 3 24.578 -6.754 78.610 1.00 23.96 O
ATOM 25 O5' C A 3 23.133 -8.359 77.384 1.00 25.24 O
TER
ATOM 1 O3' A B 6 13.355 -18.293 83.956 1.00 23.14 O
ATOM 2 P G B 7 14.644 -19.173 84.306 1.00 22.88 P
ATOM 3 OP1 G B 7 14.146 -20.502 84.750 1.00 22.93 O
ATOM 4 OP2 G B 7 15.537 -18.385 85.195 1.00 20.10 O
ATOM 5 O5' G B 7 15.367 -19.332 82.899 1.00 22.92 O
ATOM 6 C5' G B 7 14.741 -20.055 81.844 1.00 22.27 C
ATOM 7 C4' G B 7 15.549 -19.922 80.585 1.00 20.41 C
ATOM 8 O4' G B 7 15.478 -18.560 80.095 1.00 20.11 O
ATOM 9 C3' G B 7 17.032 -20.178 80.768 1.00 20.88 C
ATOM 10 O3' G B 7 17.292 -21.565 80.703 1.00 22.52 O
ATOM 11 C2' G B 7 17.620 -19.427 79.585 1.00 20.37 C
ATOM 12 O2' G B 7 17.422 -20.148 78.385 1.00 21.15 O
ATOM 13 C1' G B 7 16.739 -18.174 79.574 1.00 18.46 C
ATOM 14 N9 G B 7 17.243 -17.090 80.411 1.00 18.08 N
ATOM 15 C8 G B 7 16.693 -16.657 81.594 1.00 17.79 C
ATOM 16 N7 G B 7 17.331 -15.647 82.117 1.00 19.27 N
ATOM 17 C5 G B 7 18.375 -15.400 81.234 1.00 19.63 C
ATOM 18 C6 G B 7 19.406 -14.420 81.281 1.00 20.16 C
ATOM 19 O6 G B 7 19.595 -13.546 82.133 1.00 21.36 O
ATOM 20 N1 G B 7 20.270 -14.531 80.193 1.00 18.55 N
ATOM 21 C2 G B 7 20.155 -15.468 79.189 1.00 19.52 C
ATOM 22 N2 G B 7 21.096 -15.427 78.230 1.00 20.12 N
ATOM 23 N3 G B 7 19.194 -16.381 79.131 1.00 19.07 N
ATOM 24 C4 G B 7 18.343 -16.289 80.178 1.00 17.68 C
ATOM 25 P C B 8 18.451 -22.196 81.614 1.00 24.32 P
ATOM 26 OP1 C B 8 18.454 -23.657 81.338 1.00 25.96 O
ATOM 27 OP2 C B 8 18.300 -21.713 83.008 1.00 24.19 O
ATOM 28 O5' C B 8 19.780 -21.568 81.017 1.00 24.50 O
TER
Atoms:
C4: (21.759,-10.955,83.382)
N3: (21.665,-11.861,82.348)
OP1: (27.632,-6.281,81.967)
OP2: (25.724,-6.872,83.573)
C2: (22.607,-12.108,81.377)
C1': (24.786,-11.605,80.449)
C3': (25.211,-9.603,79.281)
O5': (26.316,-8.373,81.672)
O4': (26.023,-11.079,80.898)
C5': (27.206,-8.991,80.752)
P: (26.849,-7.297,82.716)
C4': (26.483,-10.060,79.974)
C2': (24.450,-10.914,79.128)
O2': (24.926,-11.697,78.057)
N1: (23.762,-11.364,81.475)
O4: (20.825,-10.851,84.179)
O2: (22.435,-12.920,80.489)
C6: (23.927,-10.438,82.484)
C5: (22.987,-10.210,83.416)
O3': (25.488,-9.005,78.020)
N3: (21.665,-11.861,82.348)
OP1: (27.632,-6.281,81.967)
OP2: (25.724,-6.872,83.573)
C2: (22.607,-12.108,81.377)
C1': (24.786,-11.605,80.449)
C3': (25.211,-9.603,79.281)
O5': (26.316,-8.373,81.672)
O4': (26.023,-11.079,80.898)
C5': (27.206,-8.991,80.752)
P: (26.849,-7.297,82.716)
C4': (26.483,-10.060,79.974)
C2': (24.450,-10.914,79.128)
O2': (24.926,-11.697,78.057)
N1: (23.762,-11.364,81.475)
O4: (20.825,-10.851,84.179)
O2: (22.435,-12.920,80.489)
C6: (23.927,-10.438,82.484)
C5: (22.987,-10.210,83.416)
O3': (25.488,-9.005,78.020)
OP1: (14.146,-20.502,84.750)
OP2: (15.537,-18.385,85.195)
C3': (17.032,-20.178,80.768)
C1': (16.739,-18.174,79.574)
C5': (14.741,-20.055,81.844)
O6: (19.595,-13.546,82.133)
O4': (15.478,-18.560,80.095)
C8: (16.693,-16.657,81.594)
C2: (20.155,-15.468,79.189)
C6: (19.406,-14.420,81.281)
C5: (18.375,-15.400,81.234)
C4: (18.343,-16.289,80.178)
P: (14.644,-19.173,84.306)
C4': (15.549,-19.922,80.585)
C2': (17.620,-19.427,79.585)
O2': (17.422,-20.148,78.385)
N1: (20.270,-14.531,80.193)
N2: (21.096,-15.427,78.230)
N3: (19.194,-16.381,79.131)
N7: (17.331,-15.647,82.117)
N9: (17.243,-17.090,80.411)
O5': (15.367,-19.332,82.899)
O3': (17.292,-21.565,80.703)
OP2: (15.537,-18.385,85.195)
C3': (17.032,-20.178,80.768)
C1': (16.739,-18.174,79.574)
C5': (14.741,-20.055,81.844)
O6: (19.595,-13.546,82.133)
O4': (15.478,-18.560,80.095)
C8: (16.693,-16.657,81.594)
C2: (20.155,-15.468,79.189)
C6: (19.406,-14.420,81.281)
C5: (18.375,-15.400,81.234)
C4: (18.343,-16.289,80.178)
P: (14.644,-19.173,84.306)
C4': (15.549,-19.922,80.585)
C2': (17.620,-19.427,79.585)
O2': (17.422,-20.148,78.385)
N1: (20.270,-14.531,80.193)
N2: (21.096,-15.427,78.230)
N3: (19.194,-16.381,79.131)
N7: (17.331,-15.647,82.117)
N9: (17.243,-17.090,80.411)
O5': (15.367,-19.332,82.899)
O3': (17.292,-21.565,80.703)
Image (generated by PyMOL):