Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:354:352
Extra
PDB:
ATOM 1 O3' U A 53 8.861 -88.235 8.071 1.00 90.91 O
ATOM 2 P A A 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 3 OP1 A A 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 4 OP2 A A 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 5 O5' A A 54 6.462 -87.703 8.366 1.00 85.81 O
ATOM 6 C5' A A 54 5.188 -87.137 8.115 1.00 85.97 C
ATOM 7 C4' A A 54 4.713 -86.333 9.286 1.00 84.89 C
ATOM 8 O4' A A 54 4.169 -87.212 10.299 1.00 84.81 O
ATOM 9 C3' A A 54 5.784 -85.549 10.004 1.00 83.77 C
ATOM 10 O3' A A 54 6.053 -84.322 9.364 1.00 83.50 O
ATOM 11 C2' A A 54 5.192 -85.394 11.391 1.00 82.92 C
ATOM 12 O2' A A 54 4.165 -84.410 11.377 1.00 82.68 O
ATOM 13 C1' A A 54 4.536 -86.752 11.576 1.00 83.66 C
ATOM 14 N9 A A 54 5.445 -87.750 12.172 1.00 83.58 N
ATOM 15 C8 A A 54 6.096 -88.736 11.484 1.00 84.39 C
ATOM 16 N7 A A 54 6.808 -89.533 12.236 1.00 84.15 N
ATOM 17 C5 A A 54 6.610 -89.055 13.517 1.00 83.12 C
ATOM 18 C6 A A 54 7.100 -89.480 14.764 1.00 82.43 C
ATOM 19 N6 A A 54 7.923 -90.516 14.960 1.00 82.66 N
ATOM 20 N1 A A 54 6.700 -88.780 15.839 1.00 81.48 N
ATOM 21 C2 A A 54 5.876 -87.742 15.657 1.00 81.25 C
ATOM 22 N3 A A 54 5.349 -87.253 14.540 1.00 81.83 N
ATOM 23 C4 A A 54 5.760 -87.964 13.490 1.00 82.76 C
ATOM 24 P A A 55 7.460 -83.575 9.566 1.00 81.67 P
ATOM 25 OP1 A A 55 7.301 -82.228 8.949 1.00 81.45 O
ATOM 26 OP2 A A 55 8.528 -84.485 9.043 1.00 82.24 O
ATOM 27 O5' A A 55 7.583 -83.438 11.164 1.00 80.54 O
TER
ATOM 1 O3' G B 51 5.325 -99.640 11.584 1.00106.52 O
ATOM 2 P U B 52 4.783 -98.634 10.453 1.00 83.30 P
ATOM 3 OP1 U B 52 3.319 -98.876 10.315 1.00 83.89 O
ATOM 4 OP2 U B 52 5.665 -98.827 9.264 1.00 84.00 O
ATOM 5 O5' U B 52 5.047 -97.184 11.053 1.00 81.98 O
ATOM 6 C5' U B 52 4.297 -96.076 10.598 1.00 81.82 C
ATOM 7 C4' U B 52 4.935 -94.788 11.013 1.00 80.66 C
ATOM 8 O4' U B 52 5.396 -94.897 12.384 1.00 79.71 O
ATOM 9 C3' U B 52 6.180 -94.386 10.236 1.00 80.65 C
ATOM 10 O3' U B 52 5.879 -93.776 8.984 1.00 81.21 O
ATOM 11 C2' U B 52 6.894 -93.463 11.223 1.00 79.30 C
ATOM 12 O2' U B 52 6.281 -92.198 11.247 1.00 78.73 O
ATOM 13 C1' U B 52 6.587 -94.153 12.551 1.00 78.89 C
ATOM 14 N1 U B 52 7.676 -95.068 12.965 1.00 78.88 N
ATOM 15 C2 U B 52 8.608 -94.449 13.725 1.00 77.81 C
ATOM 16 O2 U B 52 8.440 -93.291 13.976 1.00 77.04 O
ATOM 17 N3 U B 52 9.670 -95.184 14.168 1.00 77.69 N
ATOM 18 C4 U B 52 9.879 -96.509 13.899 1.00 78.57 C
ATOM 19 O4 U B 52 10.879 -97.065 14.351 1.00 78.37 O
ATOM 20 C5 U B 52 8.856 -97.103 13.078 1.00 79.69 C
ATOM 21 C6 U B 52 7.806 -96.393 12.636 1.00 79.82 C
ATOM 22 P U B 53 6.810 -94.035 7.700 1.00 94.80 P
ATOM 23 OP1 U B 53 6.046 -93.571 6.515 1.00 95.52 O
ATOM 24 OP2 U B 53 7.246 -95.453 7.762 1.00 95.47 O
ATOM 25 O5' U B 53 8.052 -93.059 7.957 1.00 93.80 O
TER
ATOM 2 P A A 54 7.616 -87.592 7.295 1.00 86.22 P
ATOM 3 OP1 A A 54 7.317 -88.454 6.149 1.00 87.52 O
ATOM 4 OP2 A A 54 7.929 -86.162 7.047 1.00 85.57 O
ATOM 5 O5' A A 54 6.462 -87.703 8.366 1.00 85.81 O
ATOM 6 C5' A A 54 5.188 -87.137 8.115 1.00 85.97 C
ATOM 7 C4' A A 54 4.713 -86.333 9.286 1.00 84.89 C
ATOM 8 O4' A A 54 4.169 -87.212 10.299 1.00 84.81 O
ATOM 9 C3' A A 54 5.784 -85.549 10.004 1.00 83.77 C
ATOM 10 O3' A A 54 6.053 -84.322 9.364 1.00 83.50 O
ATOM 11 C2' A A 54 5.192 -85.394 11.391 1.00 82.92 C
ATOM 12 O2' A A 54 4.165 -84.410 11.377 1.00 82.68 O
ATOM 13 C1' A A 54 4.536 -86.752 11.576 1.00 83.66 C
ATOM 14 N9 A A 54 5.445 -87.750 12.172 1.00 83.58 N
ATOM 15 C8 A A 54 6.096 -88.736 11.484 1.00 84.39 C
ATOM 16 N7 A A 54 6.808 -89.533 12.236 1.00 84.15 N
ATOM 17 C5 A A 54 6.610 -89.055 13.517 1.00 83.12 C
ATOM 18 C6 A A 54 7.100 -89.480 14.764 1.00 82.43 C
ATOM 19 N6 A A 54 7.923 -90.516 14.960 1.00 82.66 N
ATOM 20 N1 A A 54 6.700 -88.780 15.839 1.00 81.48 N
ATOM 21 C2 A A 54 5.876 -87.742 15.657 1.00 81.25 C
ATOM 22 N3 A A 54 5.349 -87.253 14.540 1.00 81.83 N
ATOM 23 C4 A A 54 5.760 -87.964 13.490 1.00 82.76 C
ATOM 24 P A A 55 7.460 -83.575 9.566 1.00 81.67 P
ATOM 25 OP1 A A 55 7.301 -82.228 8.949 1.00 81.45 O
ATOM 26 OP2 A A 55 8.528 -84.485 9.043 1.00 82.24 O
ATOM 27 O5' A A 55 7.583 -83.438 11.164 1.00 80.54 O
TER
ATOM 1 O3' G B 51 5.325 -99.640 11.584 1.00106.52 O
ATOM 2 P U B 52 4.783 -98.634 10.453 1.00 83.30 P
ATOM 3 OP1 U B 52 3.319 -98.876 10.315 1.00 83.89 O
ATOM 4 OP2 U B 52 5.665 -98.827 9.264 1.00 84.00 O
ATOM 5 O5' U B 52 5.047 -97.184 11.053 1.00 81.98 O
ATOM 6 C5' U B 52 4.297 -96.076 10.598 1.00 81.82 C
ATOM 7 C4' U B 52 4.935 -94.788 11.013 1.00 80.66 C
ATOM 8 O4' U B 52 5.396 -94.897 12.384 1.00 79.71 O
ATOM 9 C3' U B 52 6.180 -94.386 10.236 1.00 80.65 C
ATOM 10 O3' U B 52 5.879 -93.776 8.984 1.00 81.21 O
ATOM 11 C2' U B 52 6.894 -93.463 11.223 1.00 79.30 C
ATOM 12 O2' U B 52 6.281 -92.198 11.247 1.00 78.73 O
ATOM 13 C1' U B 52 6.587 -94.153 12.551 1.00 78.89 C
ATOM 14 N1 U B 52 7.676 -95.068 12.965 1.00 78.88 N
ATOM 15 C2 U B 52 8.608 -94.449 13.725 1.00 77.81 C
ATOM 16 O2 U B 52 8.440 -93.291 13.976 1.00 77.04 O
ATOM 17 N3 U B 52 9.670 -95.184 14.168 1.00 77.69 N
ATOM 18 C4 U B 52 9.879 -96.509 13.899 1.00 78.57 C
ATOM 19 O4 U B 52 10.879 -97.065 14.351 1.00 78.37 O
ATOM 20 C5 U B 52 8.856 -97.103 13.078 1.00 79.69 C
ATOM 21 C6 U B 52 7.806 -96.393 12.636 1.00 79.82 C
ATOM 22 P U B 53 6.810 -94.035 7.700 1.00 94.80 P
ATOM 23 OP1 U B 53 6.046 -93.571 6.515 1.00 95.52 O
ATOM 24 OP2 U B 53 7.246 -95.453 7.762 1.00 95.47 O
ATOM 25 O5' U B 53 8.052 -93.059 7.957 1.00 93.80 O
TER
Atoms:
OP1: (7.317,-88.454,6.149)
OP2: (7.929,-86.162,7.047)
C3': (5.784,-85.549,10.004)
C1': (4.536,-86.752,11.576)
C5': (5.188,-87.137,8.115)
O4': (4.169,-87.212,10.299)
C8: (6.096,-88.736,11.484)
O2': (4.165,-84.410,11.377)
C6: (7.100,-89.480,14.764)
C5: (6.610,-89.055,13.517)
C4: (5.760,-87.964,13.490)
P: (7.616,-87.592,7.295)
C4': (4.713,-86.333,9.286)
C2': (5.192,-85.394,11.391)
C2: (5.876,-87.742,15.657)
N1: (6.700,-88.780,15.839)
N3: (5.349,-87.253,14.540)
N6: (7.923,-90.516,14.960)
N7: (6.808,-89.533,12.236)
N9: (5.445,-87.750,12.172)
O5': (6.462,-87.703,8.366)
O3': (6.053,-84.322,9.364)
OP2: (7.929,-86.162,7.047)
C3': (5.784,-85.549,10.004)
C1': (4.536,-86.752,11.576)
C5': (5.188,-87.137,8.115)
O4': (4.169,-87.212,10.299)
C8: (6.096,-88.736,11.484)
O2': (4.165,-84.410,11.377)
C6: (7.100,-89.480,14.764)
C5: (6.610,-89.055,13.517)
C4: (5.760,-87.964,13.490)
P: (7.616,-87.592,7.295)
C4': (4.713,-86.333,9.286)
C2': (5.192,-85.394,11.391)
C2: (5.876,-87.742,15.657)
N1: (6.700,-88.780,15.839)
N3: (5.349,-87.253,14.540)
N6: (7.923,-90.516,14.960)
N7: (6.808,-89.533,12.236)
N9: (5.445,-87.750,12.172)
O5': (6.462,-87.703,8.366)
O3': (6.053,-84.322,9.364)
C4: (9.879,-96.509,13.899)
N3: (9.670,-95.184,14.168)
OP1: (3.319,-98.876,10.315)
OP2: (5.665,-98.827,9.264)
C2: (8.608,-94.449,13.725)
C1': (6.587,-94.153,12.551)
C3': (6.180,-94.386,10.236)
O5': (5.047,-97.184,11.053)
O4': (5.396,-94.897,12.384)
C5': (4.297,-96.076,10.598)
P: (4.783,-98.634,10.453)
C4': (4.935,-94.788,11.013)
C2': (6.894,-93.463,11.223)
O2': (6.281,-92.198,11.247)
N1: (7.676,-95.068,12.965)
O4: (10.879,-97.065,14.351)
O2: (8.440,-93.291,13.976)
C6: (7.806,-96.393,12.636)
C5: (8.856,-97.103,13.078)
O3': (5.879,-93.776,8.984)
N3: (9.670,-95.184,14.168)
OP1: (3.319,-98.876,10.315)
OP2: (5.665,-98.827,9.264)
C2: (8.608,-94.449,13.725)
C1': (6.587,-94.153,12.551)
C3': (6.180,-94.386,10.236)
O5': (5.047,-97.184,11.053)
O4': (5.396,-94.897,12.384)
C5': (4.297,-96.076,10.598)
P: (4.783,-98.634,10.453)
C4': (4.935,-94.788,11.013)
C2': (6.894,-93.463,11.223)
O2': (6.281,-92.198,11.247)
N1: (7.676,-95.068,12.965)
O4: (10.879,-97.065,14.351)
O2: (8.440,-93.291,13.976)
C6: (7.806,-96.393,12.636)
C5: (8.856,-97.103,13.078)
O3': (5.879,-93.776,8.984)
Image (generated by PyMOL):