Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11246:12609
Extra
PDB:
ATOM 1 O3' A A1245 24.228 9.155 22.876 1.00 44.04 O
ATOM 2 P A A1246 23.804 10.497 23.669 1.00 44.44 P
ATOM 3 OP1 A A1246 22.856 11.233 22.807 1.00 44.88 O
ATOM 4 OP2 A A1246 25.071 11.179 24.084 1.00 44.26 O
ATOM 5 O5' A A1246 23.033 9.946 24.946 1.00 44.14 O
ATOM 6 C5' A A1246 23.700 9.737 26.169 1.00 43.71 C
ATOM 7 C4' A A1246 22.954 10.340 27.319 1.00 43.58 C
ATOM 8 O4' A A1246 21.679 9.688 27.504 1.00 43.62 O
ATOM 9 C3' A A1246 23.603 10.175 28.654 1.00 43.16 C
ATOM 10 O3' A A1246 24.714 11.043 28.821 1.00 43.08 O
ATOM 11 C2' A A1246 22.432 10.414 29.633 1.00 43.09 C
ATOM 12 O2' A A1246 22.195 11.794 29.838 1.00 43.24 O
ATOM 13 C1' A A1246 21.258 9.860 28.847 1.00 43.37 C
ATOM 14 N9 A A1246 20.781 8.576 29.362 1.00 43.17 N
ATOM 15 C8 A A1246 21.509 7.506 29.767 1.00 42.87 C
ATOM 16 N7 A A1246 20.808 6.466 30.133 1.00 42.78 N
ATOM 17 C5 A A1246 19.492 6.899 29.968 1.00 43.04 C
ATOM 18 C6 A A1246 18.245 6.255 30.166 1.00 43.10 C
ATOM 19 N6 A A1246 18.107 4.998 30.615 1.00 42.91 N
ATOM 20 N1 A A1246 17.150 6.960 29.881 1.00 43.40 N
ATOM 21 C2 A A1246 17.275 8.210 29.456 1.00 43.60 C
ATOM 22 N3 A A1246 18.331 8.936 29.216 1.00 43.58 N
ATOM 23 C4 A A1246 19.451 8.206 29.487 1.00 43.28 C
ATOM 24 P A A1247 26.109 10.511 29.423 1.00 49.15 P
ATOM 25 OP1 A A1247 27.153 10.884 28.468 1.00 49.31 O
ATOM 26 OP2 A A1247 25.946 9.080 29.794 1.00 48.93 O
ATOM 27 O5' A A1247 26.219 11.371 30.710 1.00 48.95 O
TER
ATOM 1 O3' G B2608 22.884 -2.081 26.564 1.00 41.05 O
ATOM 2 P C B2609 23.720 -2.074 27.938 1.00 38.04 P
ATOM 3 OP1 C B2609 25.160 -2.189 27.542 1.00 37.97 O
ATOM 4 OP2 C B2609 23.133 -3.101 28.838 1.00 37.85 O
ATOM 5 O5' C B2609 23.434 -0.617 28.492 1.00 38.00 O
ATOM 6 C5' C B2609 23.527 0.506 27.627 1.00 38.25 C
ATOM 7 C4' C B2609 22.682 1.632 28.111 1.00 38.30 C
ATOM 8 O4' C B2609 21.307 1.252 28.006 1.00 38.47 O
ATOM 9 C3' C B2609 22.842 1.995 29.573 1.00 37.94 C
ATOM 10 O3' C B2609 23.967 2.785 29.789 1.00 37.81 O
ATOM 11 C2' C B2609 21.537 2.711 29.863 1.00 38.08 C
ATOM 12 O2' C B2609 21.550 4.020 29.304 1.00 38.31 O
ATOM 13 C1' C B2609 20.565 1.853 29.049 1.00 38.35 C
ATOM 14 N1 C B2609 19.913 0.770 29.848 1.00 38.18 N
ATOM 15 C2 C B2609 18.988 1.035 30.881 1.00 38.08 C
ATOM 16 O2 C B2609 18.761 2.231 31.149 1.00 38.12 O
ATOM 17 N3 C B2609 18.388 -0.001 31.538 1.00 37.95 N
ATOM 18 C4 C B2609 18.746 -1.236 31.153 1.00 37.93 C
ATOM 19 N4 C B2609 18.236 -2.301 31.760 1.00 37.82 N
ATOM 20 C5 C B2609 19.682 -1.527 30.115 1.00 38.04 C
ATOM 21 C6 C B2609 20.214 -0.511 29.478 1.00 38.16 C
ATOM 22 P U B2610 24.654 2.922 31.220 1.00 45.52 P
ATOM 23 OP1 U B2610 25.706 3.896 31.050 1.00 45.51 O
ATOM 24 OP2 U B2610 24.995 1.549 31.692 1.00 45.28 O
ATOM 25 O5' U B2610 23.519 3.527 32.137 1.00 45.48 O
TER
ATOM 2 P A A1246 23.804 10.497 23.669 1.00 44.44 P
ATOM 3 OP1 A A1246 22.856 11.233 22.807 1.00 44.88 O
ATOM 4 OP2 A A1246 25.071 11.179 24.084 1.00 44.26 O
ATOM 5 O5' A A1246 23.033 9.946 24.946 1.00 44.14 O
ATOM 6 C5' A A1246 23.700 9.737 26.169 1.00 43.71 C
ATOM 7 C4' A A1246 22.954 10.340 27.319 1.00 43.58 C
ATOM 8 O4' A A1246 21.679 9.688 27.504 1.00 43.62 O
ATOM 9 C3' A A1246 23.603 10.175 28.654 1.00 43.16 C
ATOM 10 O3' A A1246 24.714 11.043 28.821 1.00 43.08 O
ATOM 11 C2' A A1246 22.432 10.414 29.633 1.00 43.09 C
ATOM 12 O2' A A1246 22.195 11.794 29.838 1.00 43.24 O
ATOM 13 C1' A A1246 21.258 9.860 28.847 1.00 43.37 C
ATOM 14 N9 A A1246 20.781 8.576 29.362 1.00 43.17 N
ATOM 15 C8 A A1246 21.509 7.506 29.767 1.00 42.87 C
ATOM 16 N7 A A1246 20.808 6.466 30.133 1.00 42.78 N
ATOM 17 C5 A A1246 19.492 6.899 29.968 1.00 43.04 C
ATOM 18 C6 A A1246 18.245 6.255 30.166 1.00 43.10 C
ATOM 19 N6 A A1246 18.107 4.998 30.615 1.00 42.91 N
ATOM 20 N1 A A1246 17.150 6.960 29.881 1.00 43.40 N
ATOM 21 C2 A A1246 17.275 8.210 29.456 1.00 43.60 C
ATOM 22 N3 A A1246 18.331 8.936 29.216 1.00 43.58 N
ATOM 23 C4 A A1246 19.451 8.206 29.487 1.00 43.28 C
ATOM 24 P A A1247 26.109 10.511 29.423 1.00 49.15 P
ATOM 25 OP1 A A1247 27.153 10.884 28.468 1.00 49.31 O
ATOM 26 OP2 A A1247 25.946 9.080 29.794 1.00 48.93 O
ATOM 27 O5' A A1247 26.219 11.371 30.710 1.00 48.95 O
TER
ATOM 1 O3' G B2608 22.884 -2.081 26.564 1.00 41.05 O
ATOM 2 P C B2609 23.720 -2.074 27.938 1.00 38.04 P
ATOM 3 OP1 C B2609 25.160 -2.189 27.542 1.00 37.97 O
ATOM 4 OP2 C B2609 23.133 -3.101 28.838 1.00 37.85 O
ATOM 5 O5' C B2609 23.434 -0.617 28.492 1.00 38.00 O
ATOM 6 C5' C B2609 23.527 0.506 27.627 1.00 38.25 C
ATOM 7 C4' C B2609 22.682 1.632 28.111 1.00 38.30 C
ATOM 8 O4' C B2609 21.307 1.252 28.006 1.00 38.47 O
ATOM 9 C3' C B2609 22.842 1.995 29.573 1.00 37.94 C
ATOM 10 O3' C B2609 23.967 2.785 29.789 1.00 37.81 O
ATOM 11 C2' C B2609 21.537 2.711 29.863 1.00 38.08 C
ATOM 12 O2' C B2609 21.550 4.020 29.304 1.00 38.31 O
ATOM 13 C1' C B2609 20.565 1.853 29.049 1.00 38.35 C
ATOM 14 N1 C B2609 19.913 0.770 29.848 1.00 38.18 N
ATOM 15 C2 C B2609 18.988 1.035 30.881 1.00 38.08 C
ATOM 16 O2 C B2609 18.761 2.231 31.149 1.00 38.12 O
ATOM 17 N3 C B2609 18.388 -0.001 31.538 1.00 37.95 N
ATOM 18 C4 C B2609 18.746 -1.236 31.153 1.00 37.93 C
ATOM 19 N4 C B2609 18.236 -2.301 31.760 1.00 37.82 N
ATOM 20 C5 C B2609 19.682 -1.527 30.115 1.00 38.04 C
ATOM 21 C6 C B2609 20.214 -0.511 29.478 1.00 38.16 C
ATOM 22 P U B2610 24.654 2.922 31.220 1.00 45.52 P
ATOM 23 OP1 U B2610 25.706 3.896 31.050 1.00 45.51 O
ATOM 24 OP2 U B2610 24.995 1.549 31.692 1.00 45.28 O
ATOM 25 O5' U B2610 23.519 3.527 32.137 1.00 45.48 O
TER
Atoms:
OP1: (22.856,11.233,22.807)
OP2: (25.071,11.179,24.084)
C3': (23.603,10.175,28.654)
C1': (21.258,9.860,28.847)
C5': (23.700,9.737,26.169)
O4': (21.679,9.688,27.504)
C8: (21.509,7.506,29.767)
O2': (22.195,11.794,29.838)
C6: (18.245,6.255,30.166)
C5: (19.492,6.899,29.968)
C4: (19.451,8.206,29.487)
P: (23.804,10.497,23.669)
C4': (22.954,10.340,27.319)
C2': (22.432,10.414,29.633)
C2: (17.275,8.210,29.456)
N1: (17.150,6.960,29.881)
N3: (18.331,8.936,29.216)
N6: (18.107,4.998,30.615)
N7: (20.808,6.466,30.133)
N9: (20.781,8.576,29.362)
O5': (23.033,9.946,24.946)
O3': (24.714,11.043,28.821)
OP2: (25.071,11.179,24.084)
C3': (23.603,10.175,28.654)
C1': (21.258,9.860,28.847)
C5': (23.700,9.737,26.169)
O4': (21.679,9.688,27.504)
C8: (21.509,7.506,29.767)
O2': (22.195,11.794,29.838)
C6: (18.245,6.255,30.166)
C5: (19.492,6.899,29.968)
C4: (19.451,8.206,29.487)
P: (23.804,10.497,23.669)
C4': (22.954,10.340,27.319)
C2': (22.432,10.414,29.633)
C2: (17.275,8.210,29.456)
N1: (17.150,6.960,29.881)
N3: (18.331,8.936,29.216)
N6: (18.107,4.998,30.615)
N7: (20.808,6.466,30.133)
N9: (20.781,8.576,29.362)
O5': (23.033,9.946,24.946)
O3': (24.714,11.043,28.821)
C2: (18.988,1.035,30.881)
OP1: (25.160,-2.189,27.542)
OP2: (23.133,-3.101,28.838)
C4: (18.746,-1.236,31.153)
O5': (23.434,-0.617,28.492)
C3': (22.842,1.995,29.573)
C1': (20.565,1.853,29.049)
O4': (21.307,1.252,28.006)
C5': (23.527,0.506,27.627)
P: (23.720,-2.074,27.938)
O2: (18.761,2.231,31.149)
C4': (22.682,1.632,28.111)
C2': (21.537,2.711,29.863)
O2': (21.550,4.020,29.304)
N1: (19.913,0.770,29.848)
N3: (18.388,-0.001,31.538)
N4: (18.236,-2.301,31.760)
C6: (20.214,-0.511,29.478)
C5: (19.682,-1.527,30.115)
O3': (23.967,2.785,29.789)
OP1: (25.160,-2.189,27.542)
OP2: (23.133,-3.101,28.838)
C4: (18.746,-1.236,31.153)
O5': (23.434,-0.617,28.492)
C3': (22.842,1.995,29.573)
C1': (20.565,1.853,29.049)
O4': (21.307,1.252,28.006)
C5': (23.527,0.506,27.627)
P: (23.720,-2.074,27.938)
O2: (18.761,2.231,31.149)
C4': (22.682,1.632,28.111)
C2': (21.537,2.711,29.863)
O2': (21.550,4.020,29.304)
N1: (19.913,0.770,29.848)
N3: (18.388,-0.001,31.538)
N4: (18.236,-2.301,31.760)
C6: (20.214,-0.511,29.478)
C5: (19.682,-1.527,30.115)
O3': (23.967,2.785,29.789)
Image (generated by PyMOL):