Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B42:B40
Extra
PDB:
ATOM 1 O3' C A 41 -10.339 34.693 15.698 1.00 77.55 O
ATOM 2 P A A 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A A 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A A 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A A 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A A 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A A 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A A 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A A 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A A 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A A 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A A 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A A 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A A 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A A 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A A 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A A 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A A 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A A 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A A 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A A 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A A 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A A 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
TER
ATOM 1 O3' G B 39 -3.439 42.079 10.175 1.00 91.10 O
ATOM 2 P G B 40 -3.593 40.479 10.152 1.00 91.15 P
ATOM 3 OP1 G B 40 -2.424 39.917 10.883 1.00 91.47 O
ATOM 4 OP2 G B 40 -3.856 40.045 8.751 1.00 89.52 O
ATOM 5 O5' G B 40 -4.910 40.230 11.021 1.00 90.10 O
ATOM 6 C5' G B 40 -4.956 40.593 12.403 1.00 87.26 C
ATOM 7 C4' G B 40 -6.322 40.298 12.983 1.00 86.30 C
ATOM 8 O4' G B 40 -7.309 41.212 12.436 1.00 85.73 O
ATOM 9 C3' G B 40 -6.881 38.921 12.675 1.00 86.22 C
ATOM 10 O3' G B 40 -6.365 37.913 13.528 1.00 86.01 O
ATOM 11 C2' G B 40 -8.386 39.121 12.826 1.00 85.28 C
ATOM 12 O2' G B 40 -8.839 39.020 14.160 1.00 85.86 O
ATOM 13 C1' G B 40 -8.562 40.551 12.310 1.00 83.31 C
ATOM 14 N9 G B 40 -8.936 40.541 10.899 1.00 79.52 N
ATOM 15 C8 G B 40 -8.085 40.576 9.820 1.00 77.98 C
ATOM 16 N7 G B 40 -8.707 40.480 8.676 1.00 76.96 N
ATOM 17 C5 G B 40 -10.052 40.391 9.020 1.00 75.72 C
ATOM 18 C6 G B 40 -11.211 40.256 8.200 1.00 73.78 C
ATOM 19 O6 G B 40 -11.283 40.178 6.969 1.00 70.92 O
ATOM 20 N1 G B 40 -12.373 40.209 8.961 1.00 73.93 N
ATOM 21 C2 G B 40 -12.421 40.280 10.332 1.00 74.94 C
ATOM 22 N2 G B 40 -13.642 40.221 10.884 1.00 74.46 N
ATOM 23 N3 G B 40 -11.352 40.400 11.105 1.00 75.99 N
ATOM 24 C4 G B 40 -10.210 40.446 10.388 1.00 77.00 C
ATOM 25 P C B 41 -5.918 36.510 12.891 1.00 86.40 P
ATOM 26 OP1 C B 41 -5.474 35.623 13.997 1.00 87.16 O
ATOM 27 OP2 C B 41 -4.999 36.797 11.754 1.00 85.77 O
ATOM 28 O5' C B 41 -7.267 35.921 12.283 1.00 83.87 O
TER
ATOM 2 P A A 42 -9.717 33.876 16.933 1.00 79.04 P
ATOM 3 OP1 A A 42 -8.283 34.256 17.083 1.00 76.70 O
ATOM 4 OP2 A A 42 -10.091 32.445 16.747 1.00 78.64 O
ATOM 5 O5' A A 42 -10.548 34.425 18.172 1.00 77.82 O
ATOM 6 C5' A A 42 -9.918 35.066 19.273 1.00 77.26 C
ATOM 7 C4' A A 42 -10.863 36.073 19.873 1.00 77.17 C
ATOM 8 O4' A A 42 -10.533 37.408 19.419 1.00 77.69 O
ATOM 9 C3' A A 42 -12.312 35.864 19.470 1.00 76.93 C
ATOM 10 O3' A A 42 -12.956 34.902 20.286 1.00 75.73 O
ATOM 11 C2' A A 42 -12.916 37.257 19.595 1.00 77.50 C
ATOM 12 O2' A A 42 -13.367 37.548 20.896 1.00 77.68 O
ATOM 13 C1' A A 42 -11.727 38.153 19.231 1.00 78.44 C
ATOM 14 N9 A A 42 -11.764 38.626 17.846 1.00 79.17 N
ATOM 15 C8 A A 42 -10.932 38.290 16.804 1.00 78.60 C
ATOM 16 N7 A A 42 -11.218 38.904 15.681 1.00 78.80 N
ATOM 17 C5 A A 42 -12.315 39.694 16.002 1.00 78.94 C
ATOM 18 C6 A A 42 -13.090 40.593 15.244 1.00 78.73 C
ATOM 19 N6 A A 42 -12.866 40.867 13.957 1.00 77.82 N
ATOM 20 N1 A A 42 -14.117 41.213 15.865 1.00 79.32 N
ATOM 21 C2 A A 42 -14.337 40.950 17.160 1.00 80.17 C
ATOM 22 N3 A A 42 -13.675 40.131 17.980 1.00 80.23 N
ATOM 23 C4 A A 42 -12.664 39.527 17.330 1.00 79.19 C
ATOM 24 P A A 43 -14.347 34.262 19.802 1.00 77.13 P
ATOM 25 OP1 A A 43 -14.773 33.222 20.785 1.00 76.08 O
ATOM 26 OP2 A A 43 -14.200 33.901 18.366 1.00 75.98 O
ATOM 27 O5' A A 43 -15.359 35.493 19.860 1.00 75.99 O
TER
ATOM 1 O3' G B 39 -3.439 42.079 10.175 1.00 91.10 O
ATOM 2 P G B 40 -3.593 40.479 10.152 1.00 91.15 P
ATOM 3 OP1 G B 40 -2.424 39.917 10.883 1.00 91.47 O
ATOM 4 OP2 G B 40 -3.856 40.045 8.751 1.00 89.52 O
ATOM 5 O5' G B 40 -4.910 40.230 11.021 1.00 90.10 O
ATOM 6 C5' G B 40 -4.956 40.593 12.403 1.00 87.26 C
ATOM 7 C4' G B 40 -6.322 40.298 12.983 1.00 86.30 C
ATOM 8 O4' G B 40 -7.309 41.212 12.436 1.00 85.73 O
ATOM 9 C3' G B 40 -6.881 38.921 12.675 1.00 86.22 C
ATOM 10 O3' G B 40 -6.365 37.913 13.528 1.00 86.01 O
ATOM 11 C2' G B 40 -8.386 39.121 12.826 1.00 85.28 C
ATOM 12 O2' G B 40 -8.839 39.020 14.160 1.00 85.86 O
ATOM 13 C1' G B 40 -8.562 40.551 12.310 1.00 83.31 C
ATOM 14 N9 G B 40 -8.936 40.541 10.899 1.00 79.52 N
ATOM 15 C8 G B 40 -8.085 40.576 9.820 1.00 77.98 C
ATOM 16 N7 G B 40 -8.707 40.480 8.676 1.00 76.96 N
ATOM 17 C5 G B 40 -10.052 40.391 9.020 1.00 75.72 C
ATOM 18 C6 G B 40 -11.211 40.256 8.200 1.00 73.78 C
ATOM 19 O6 G B 40 -11.283 40.178 6.969 1.00 70.92 O
ATOM 20 N1 G B 40 -12.373 40.209 8.961 1.00 73.93 N
ATOM 21 C2 G B 40 -12.421 40.280 10.332 1.00 74.94 C
ATOM 22 N2 G B 40 -13.642 40.221 10.884 1.00 74.46 N
ATOM 23 N3 G B 40 -11.352 40.400 11.105 1.00 75.99 N
ATOM 24 C4 G B 40 -10.210 40.446 10.388 1.00 77.00 C
ATOM 25 P C B 41 -5.918 36.510 12.891 1.00 86.40 P
ATOM 26 OP1 C B 41 -5.474 35.623 13.997 1.00 87.16 O
ATOM 27 OP2 C B 41 -4.999 36.797 11.754 1.00 85.77 O
ATOM 28 O5' C B 41 -7.267 35.921 12.283 1.00 83.87 O
TER
Atoms:
OP1: (-8.283,34.256,17.083)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
OP2: (-10.091,32.445,16.747)
C3': (-12.312,35.864,19.470)
C1': (-11.727,38.153,19.231)
C5': (-9.918,35.066,19.273)
O4': (-10.533,37.408,19.419)
C8: (-10.932,38.290,16.804)
O2': (-13.367,37.548,20.896)
C6: (-13.090,40.593,15.244)
C5: (-12.315,39.694,16.002)
C4: (-12.664,39.527,17.330)
P: (-9.717,33.876,16.933)
C4': (-10.863,36.073,19.873)
C2': (-12.916,37.257,19.595)
C2: (-14.337,40.950,17.160)
N1: (-14.117,41.213,15.865)
N3: (-13.675,40.131,17.980)
N6: (-12.866,40.867,13.957)
N7: (-11.218,38.904,15.681)
N9: (-11.764,38.626,17.846)
O5': (-10.548,34.425,18.172)
O3': (-12.956,34.902,20.286)
OP1: (-2.424,39.917,10.883)
OP2: (-3.856,40.045,8.751)
C3': (-6.881,38.921,12.675)
C1': (-8.562,40.551,12.310)
C5': (-4.956,40.593,12.403)
O6: (-11.283,40.178,6.969)
O4': (-7.309,41.212,12.436)
C8: (-8.085,40.576,9.820)
C2: (-12.421,40.280,10.332)
C6: (-11.211,40.256,8.200)
C5: (-10.052,40.391,9.020)
C4: (-10.210,40.446,10.388)
P: (-3.593,40.479,10.152)
C4': (-6.322,40.298,12.983)
C2': (-8.386,39.121,12.826)
O2': (-8.839,39.020,14.160)
N1: (-12.373,40.209,8.961)
N2: (-13.642,40.221,10.884)
N3: (-11.352,40.400,11.105)
N7: (-8.707,40.480,8.676)
N9: (-8.936,40.541,10.899)
O5': (-4.910,40.230,11.021)
O3': (-6.365,37.913,13.528)
OP2: (-3.856,40.045,8.751)
C3': (-6.881,38.921,12.675)
C1': (-8.562,40.551,12.310)
C5': (-4.956,40.593,12.403)
O6: (-11.283,40.178,6.969)
O4': (-7.309,41.212,12.436)
C8: (-8.085,40.576,9.820)
C2: (-12.421,40.280,10.332)
C6: (-11.211,40.256,8.200)
C5: (-10.052,40.391,9.020)
C4: (-10.210,40.446,10.388)
P: (-3.593,40.479,10.152)
C4': (-6.322,40.298,12.983)
C2': (-8.386,39.121,12.826)
O2': (-8.839,39.020,14.160)
N1: (-12.373,40.209,8.961)
N2: (-13.642,40.221,10.884)
N3: (-11.352,40.400,11.105)
N7: (-8.707,40.480,8.676)
N9: (-8.936,40.541,10.899)
O5': (-4.910,40.230,11.021)
O3': (-6.365,37.913,13.528)
Image (generated by PyMOL):