ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3MUM:R8:R6

Extra

PDB:
ATOM 1 O3' C A 7 -11.326 8.224 22.757 1.00 50.39 O
ATOM 2 P A A 8 -10.420 7.876 21.487 1.00 46.07 P
ATOM 3 OP1 A A 8 -10.008 9.155 20.872 1.00 46.81 O
ATOM 4 OP2 A A 8 -11.123 6.855 20.677 1.00 48.36 O
ATOM 5 O5' A A 8 -9.142 7.191 22.148 1.00 44.08 O
ATOM 6 C5' A A 8 -9.204 5.834 22.521 1.00 45.94 C
ATOM 7 C4' A A 8 -9.377 5.687 24.017 1.00 47.54 C
ATOM 8 O4' A A 8 -10.692 5.143 24.311 1.00 48.12 O
ATOM 9 C3' A A 8 -8.397 4.704 24.636 1.00 47.50 C
ATOM 10 O3' A A 8 -7.185 5.368 24.971 1.00 45.25 O
ATOM 11 C2' A A 8 -9.158 4.212 25.865 1.00 49.13 C
ATOM 12 O2' A A 8 -9.037 5.079 26.978 1.00 51.22 O
ATOM 13 C1' A A 8 -10.603 4.199 25.369 1.00 48.49 C
ATOM 14 N9 A A 8 -11.084 2.881 24.929 1.00 48.44 N
ATOM 15 C8 A A 8 -11.564 2.542 23.693 1.00 47.62 C
ATOM 16 N7 A A 8 -11.935 1.288 23.582 1.00 47.01 N
ATOM 17 C5 A A 8 -11.682 0.754 24.833 1.00 48.66 C
ATOM 18 C6 A A 8 -11.856 -0.542 25.377 1.00 48.84 C
ATOM 19 N6 A A 8 -12.351 -1.574 24.687 1.00 48.96 N
ATOM 20 N1 A A 8 -11.500 -0.742 26.666 1.00 48.05 N
ATOM 21 C2 A A 8 -11.004 0.286 27.365 1.00 47.15 C
ATOM 22 N3 A A 8 -10.797 1.542 26.967 1.00 48.24 N
ATOM 23 C4 A A 8 -11.158 1.720 25.679 1.00 49.10 C
ATOM 24 P C A 9 -5.777 4.621 24.819 1.00 47.23 P
ATOM 25 OP1 C A 9 -4.724 5.563 25.262 1.00 46.45 O
ATOM 26 OP2 C A 9 -5.718 4.047 23.456 1.00 48.00 O
ATOM 27 O5' C A 9 -5.857 3.387 25.847 1.00 48.09 O
TER

ATOM 1 O3' C B 5 -20.605 3.485 16.494 1.00 42.33 O
ATOM 2 P G B 6 -19.262 4.075 15.845 1.00 44.75 P
ATOM 3 OP1 G B 6 -19.518 5.480 15.443 1.00 45.20 O
ATOM 4 OP2 G B 6 -18.740 3.100 14.861 1.00 44.83 O
ATOM 5 O5' G B 6 -18.257 4.069 17.080 1.00 44.24 O
ATOM 6 C5' G B 6 -18.306 5.074 18.087 1.00 42.50 C
ATOM 7 C4' G B 6 -17.069 4.931 18.945 1.00 40.54 C
ATOM 8 O4' G B 6 -16.907 3.533 19.305 1.00 40.13 O
ATOM 9 C3' G B 6 -15.779 5.343 18.247 1.00 40.05 C
ATOM 10 O3' G B 6 -14.960 6.059 19.160 1.00 44.93 O
ATOM 11 C2' G B 6 -15.178 4.006 17.814 1.00 37.94 C
ATOM 12 O2' G B 6 -13.772 4.025 17.700 1.00 40.00 O
ATOM 13 C1' G B 6 -15.616 3.081 18.947 1.00 35.76 C
ATOM 14 N9 G B 6 -15.699 1.666 18.576 1.00 28.86 N
ATOM 15 C8 G B 6 -16.518 1.117 17.619 1.00 27.34 C
ATOM 16 N7 G B 6 -16.378 -0.175 17.495 1.00 27.33 N
ATOM 17 C5 G B 6 -15.412 -0.512 18.430 1.00 25.35 C
ATOM 18 C6 G B 6 -14.852 -1.776 18.750 1.00 26.44 C
ATOM 19 O6 G B 6 -15.111 -2.883 18.252 1.00 27.43 O
ATOM 20 N1 G B 6 -13.892 -1.691 19.759 1.00 25.21 N
ATOM 21 C2 G B 6 -13.527 -0.525 20.383 1.00 25.37 C
ATOM 22 N2 G B 6 -12.585 -0.645 21.330 1.00 24.85 N
ATOM 23 N3 G B 6 -14.045 0.672 20.091 1.00 25.75 N
ATOM 24 C4 G B 6 -14.981 0.609 19.105 1.00 26.05 C
ATOM 25 P C B 7 -15.125 7.649 19.311 1.00 49.21 P
ATOM 26 OP1 C B 7 -16.443 7.939 19.924 1.00 47.62 O
ATOM 27 OP2 C B 7 -14.778 8.276 18.015 1.00 49.97 O
ATOM 28 O5' C B 7 -13.956 7.994 20.346 1.00 49.84 O
TER

Atoms:
OP1: (-10.008,9.155,20.872)
OP2: (-11.123,6.855,20.677)
C3': (-8.397,4.704,24.636)
C1': (-10.603,4.199,25.369)
C5': (-9.204,5.834,22.521)
O4': (-10.692,5.143,24.311)
C8: (-11.564,2.542,23.693)
O2': (-9.037,5.079,26.978)
C6: (-11.856,-0.542,25.377)
C5: (-11.682,0.754,24.833)
C4: (-11.158,1.720,25.679)
P: (-10.420,7.876,21.487)
C4': (-9.377,5.687,24.017)
C2': (-9.158,4.212,25.865)
C2: (-11.004,0.286,27.365)
N1: (-11.500,-0.742,26.666)
N3: (-10.797,1.542,26.967)
N6: (-12.351,-1.574,24.687)
N7: (-11.935,1.288,23.582)
N9: (-11.084,2.881,24.929)
O5': (-9.142,7.191,22.148)
O3': (-7.185,5.368,24.971)
OP1: (-19.518,5.480,15.443)
OP2: (-18.740,3.100,14.861)
C3': (-15.779,5.343,18.247)
C1': (-15.616,3.081,18.947)
C5': (-18.306,5.074,18.087)
O6: (-15.111,-2.883,18.252)
O4': (-16.907,3.533,19.305)
C8: (-16.518,1.117,17.619)
C2: (-13.527,-0.525,20.383)
C6: (-14.852,-1.776,18.750)
C5: (-15.412,-0.512,18.430)
C4: (-14.981,0.609,19.105)
P: (-19.262,4.075,15.845)
C4': (-17.069,4.931,18.945)
C2': (-15.178,4.006,17.814)
O2': (-13.772,4.025,17.700)
N1: (-13.892,-1.691,19.759)
N2: (-12.585,-0.645,21.330)
N3: (-14.045,0.672,20.091)
N7: (-16.378,-0.175,17.495)
N9: (-15.699,1.666,18.576)
O5': (-18.257,4.069,17.080)
O3': (-14.960,6.059,19.160)
Image (generated by PyMOL):
PyMOL image
show in jmol